-
1
-
-
34249330696
-
Epigenetic inheritance in plants.
-
10.1038/nature05917, 17522675
-
Henderson IR, Jacobsen SE. Epigenetic inheritance in plants. Nature 2007, 447:418-424. 10.1038/nature05917, 17522675.
-
(2007)
Nature
, vol.447
, pp. 418-424
-
-
Henderson, I.R.1
Jacobsen, S.E.2
-
2
-
-
34249337761
-
Perceptions of epigenetics.
-
10.1038/nature05913, 17522671
-
Bird A. Perceptions of epigenetics. Nature 2007, 447:396-398. 10.1038/nature05913, 17522671.
-
(2007)
Nature
, vol.447
, pp. 396-398
-
-
Bird, A.1
-
3
-
-
79955592294
-
The epigenome and plant development.
-
10.1146/annurev-arplant-042110-103806, 21438682
-
He G, Elling AA, Deng XW. The epigenome and plant development. Annu Rev Plant Biol 2011, 62:411-435. 10.1146/annurev-arplant-042110-103806, 21438682.
-
(2011)
Annu Rev Plant Biol
, vol.62
, pp. 411-435
-
-
He, G.1
Elling, A.A.2
Deng, X.W.3
-
4
-
-
17744364327
-
Gardening the genome: DNA methylation in Arabidopsis thaliana.
-
Chan SW, Henderson IR, Jacobsen SE. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet 2005, 6:351-360.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 351-360
-
-
Chan, S.W.1
Henderson, I.R.2
Jacobsen, S.E.3
-
5
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals.
-
10.1038/nrg2719, 3034103, 20142834
-
Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 2010, 11:204-220. 10.1038/nrg2719, 3034103, 20142834.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
6
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.
-
10.1016/j.cell.2006.08.003, 16949657
-
Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H, Henderson IR, Shinn P, Pellegrini M, Jacobsen SE, Ecker JR. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell 2006, 126:1189-1201. 10.1016/j.cell.2006.08.003, 16949657.
-
(2006)
Cell
, vol.126
, pp. 1189-1201
-
-
Zhang, X.1
Yazaki, J.2
Sundaresan, A.3
Cokus, S.4
Chan, S.W.5
Chen, H.6
Henderson, I.R.7
Shinn, P.8
Pellegrini, M.9
Jacobsen, S.E.10
Ecker, J.R.11
-
7
-
-
66149176899
-
Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize.
-
10.1105/tpc.109.065714, 2685623, 19376930
-
Wang X, Elling AA, Li X, Li N, Peng Z, He G, Sun H, Qi Y, Liu XS, Deng XW. Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize. Plant Cell 2009, 21:1053-1069. 10.1105/tpc.109.065714, 2685623, 19376930.
-
(2009)
Plant Cell
, vol.21
, pp. 1053-1069
-
-
Wang, X.1
Elling, A.A.2
Li, X.3
Li, N.4
Peng, Z.5
He, G.6
Sun, H.7
Qi, Y.8
Liu, X.S.9
Deng, X.W.10
-
8
-
-
77950346035
-
Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids.
-
10.1105/tpc.109.072041, 2828707, 20086188
-
He G, Zhu X, Elling AA, Chen L, Wang X, Guo L, Liang M, He H, Zhang H, Chen F, Qi Y, Chen R, Deng XW. Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell 2010, 22:17-33. 10.1105/tpc.109.072041, 2828707, 20086188.
-
(2010)
Plant Cell
, vol.22
, pp. 17-33
-
-
He, G.1
Zhu, X.2
Elling, A.A.3
Chen, L.4
Wang, X.5
Guo, L.6
Liang, M.7
He, H.8
Zhang, H.9
Chen, F.10
Qi, Y.11
Chen, R.12
Deng, X.W.13
-
9
-
-
34249299791
-
The complex language of chromatin regulation during transcription.
-
10.1038/nature05915, 17522673
-
Berger SL. The complex language of chromatin regulation during transcription. Nature 2007, 447:407-412. 10.1038/nature05915, 17522673.
-
(2007)
Nature
, vol.447
, pp. 407-412
-
-
Berger, S.L.1
-
10
-
-
33847070442
-
The role of chromatin during transcription.
-
10.1016/j.cell.2007.01.015, 17320508
-
Li B, Carey M, Workman JL. The role of chromatin during transcription. Cell 2007, 128:707-719. 10.1016/j.cell.2007.01.015, 17320508.
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
11
-
-
77952500831
-
Histone methylation in higher plants.
-
10.1146/annurev.arplant.043008.091939, 20192747
-
Liu C, Lu F, Cui X, Cao X. Histone methylation in higher plants. Annu Rev Plant Biol 2010, 61:395-420. 10.1146/annurev.arplant.043008.091939, 20192747.
-
(2010)
Annu Rev Plant Biol
, vol.61
, pp. 395-420
-
-
Liu, C.1
Lu, F.2
Cui, X.3
Cao, X.4
-
12
-
-
58449134534
-
Small silencing RNAs: an expanding universe.
-
10.1038/nrg2504, 2724769, 19148191
-
Ghildiyal M, Zamore PD. Small silencing RNAs: an expanding universe. Nat Rev Genet 2009, 10:94-108. 10.1038/nrg2504, 2724769, 19148191.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
13
-
-
70350227275
-
Small RNAs and their roles in plant development.
-
10.1146/annurev.cellbio.042308.113417, 19575669
-
Chen X. Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol 2009, 25:21-44. 10.1146/annurev.cellbio.042308.113417, 19575669.
-
(2009)
Annu Rev Cell Dev Biol
, vol.25
, pp. 21-44
-
-
Chen, X.1
-
14
-
-
42549090878
-
High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression.
-
10.1105/tpc.107.056879, 2276441, 18263775
-
Li X, Wang X, He K, Ma Y, Su N, He H, Stolc V, Tongprasit W, Jin W, Jiang J, Terzaghi W, Li S, Deng XW. High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression. Plant Cell 2008, 20:259-276. 10.1105/tpc.107.056879, 2276441, 18263775.
-
(2008)
Plant Cell
, vol.20
, pp. 259-276
-
-
Li, X.1
Wang, X.2
He, K.3
Ma, Y.4
Su, N.5
He, H.6
Stolc, V.7
Tongprasit, W.8
Jin, W.9
Jiang, J.10
Terzaghi, W.11
Li, S.12
Deng, X.W.13
-
15
-
-
84866791265
-
Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max.
-
10.1186/1471-2229-12-177, 3534067, 23031057
-
Zabala G, Campos E, Varala KK, Bloomfield S, Jones SI, Win H, Tuteja JH, Calla B, Clough SJ, Hudson M, Vodkin LO. Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max. BMC Plant Biol 2012, 12:177. 10.1186/1471-2229-12-177, 3534067, 23031057.
-
(2012)
BMC Plant Biol
, vol.12
, pp. 177
-
-
Zabala, G.1
Campos, E.2
Varala, K.K.3
Bloomfield, S.4
Jones, S.I.5
Win, H.6
Tuteja, J.H.7
Calla, B.8
Clough, S.J.9
Hudson, M.10
Vodkin, L.O.11
-
16
-
-
34347327677
-
Epigenetic natural variation in Arabidopsis thaliana.
-
10.1371/journal.pbio.0050174, 1892575, 17579518
-
Vaughn MW, Tanurdzic M, Lippman Z, Jiang H, Carrasquillo R, Rabinowicz PD, Dedhia N, McCombie WR, Agier N, Bulski A, Colot V, Doerge RW, Martienssen RA. Epigenetic natural variation in Arabidopsis thaliana. PLoS Biol 2007, 5:e174. 10.1371/journal.pbio.0050174, 1892575, 17579518.
-
(2007)
PLoS Biol
, vol.5
-
-
Vaughn, M.W.1
Tanurdzic, M.2
Lippman, Z.3
Jiang, H.4
Carrasquillo, R.5
Rabinowicz, P.D.6
Dedhia, N.7
McCombie, W.R.8
Agier, N.9
Bulski, A.10
Colot, V.11
Doerge, R.W.12
Martienssen, R.A.13
-
17
-
-
41949131536
-
Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays.
-
10.1371/journal.pgen.1000032, 2265482, 18369451
-
Zhang X, Shiu SH, Cal A, Borevitz JO. Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays. PLoS Genet 2008, 4:e1000032. 10.1371/journal.pgen.1000032, 2265482, 18369451.
-
(2008)
PLoS Genet
, vol.4
-
-
Zhang, X.1
Shiu, S.H.2
Cal, A.3
Borevitz, J.O.4
-
18
-
-
77952734605
-
Conservation and divergence of methylation patterning in plants and animals.
-
10.1073/pnas.1002720107, 2889301, 20395551
-
Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE. Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci USA 2010, 107:8689-8694. 10.1073/pnas.1002720107, 2889301, 20395551.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 8689-8694
-
-
Feng, S.1
Cokus, S.J.2
Zhang, X.3
Chen, P.Y.4
Bostick, M.5
Goll, M.G.6
Hetzel, J.7
Jain, J.8
Strauss, S.H.9
Halpern, M.E.10
Ukomadu, C.11
Sadler, K.C.12
Pradhan, S.13
Pellegrini, M.14
Jacobsen, S.E.15
-
19
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation.
-
10.1126/science.1186366, 20395474
-
Zemach A, McDaniel IE, Silva P, Zilberman D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 2010, 328:916-919. 10.1126/science.1186366, 20395474.
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
20
-
-
81755163109
-
Heritable epigenetic variation among maize inbreds.
-
10.1371/journal.pgen.1002372, 3219600, 22125494
-
Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM. Heritable epigenetic variation among maize inbreds. PLoS Genet 2011, 7:e1002372. 10.1371/journal.pgen.1002372, 3219600, 22125494.
-
(2011)
PLoS Genet
, vol.7
-
-
Eichten, S.R.1
Swanson-Wagner, R.A.2
Schnable, J.C.3
Waters, A.J.4
Hermanson, P.J.5
Liu, S.6
Yeh, C.T.7
Jia, Y.8
Gendler, K.9
Freeling, M.10
Schnable, P.S.11
Vaughn, M.W.12
Springer, N.M.13
-
21
-
-
79952301195
-
Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor.
-
10.1073/pnas.1019217108, 3038704, 21266545
-
Groszmann M, Greaves IK, Albertyn ZI, Scofield GN, Peacock WJ, Dennis ES. Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor. Proc Natl Acad Sci USA 2011, 108:2617-2622. 10.1073/pnas.1019217108, 3038704, 21266545.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 2617-2622
-
-
Groszmann, M.1
Greaves, I.K.2
Albertyn, Z.I.3
Scofield, G.N.4
Peacock, W.J.5
Dennis, E.S.6
-
22
-
-
84863393179
-
Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm.
-
10.1105/tpc.111.092668, 3269861, 22198147
-
Waters AJ, Makarevitch I, Eichten SR, Swanson-Wagner RA, Yeh CT, Xu W, Schnable PS, Vaughn MW, Gehring M, Springer NM. Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm. Plant Cell 2011, 23:4221-4233. 10.1105/tpc.111.092668, 3269861, 22198147.
-
(2011)
Plant Cell
, vol.23
, pp. 4221-4233
-
-
Waters, A.J.1
Makarevitch, I.2
Eichten, S.R.3
Swanson-Wagner, R.A.4
Yeh, C.T.5
Xu, W.6
Schnable, P.S.7
Vaughn, M.W.8
Gehring, M.9
Springer, N.M.10
-
23
-
-
84864353941
-
Transcriptome and methylome interactions in rice hybrids.
-
10.1073/pnas.1209297109, 3409791, 22778444
-
Chodavarapu RK, Feng S, Ding B, Simon SA, Lopez D, Jia Y, Wang GL, Meyers BC, Jacobsen SE, Pellegrini M. Transcriptome and methylome interactions in rice hybrids. Proc Natl Acad Sci USA 2012, 109:12040-12045. 10.1073/pnas.1209297109, 3409791, 22778444.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 12040-12045
-
-
Chodavarapu, R.K.1
Feng, S.2
Ding, B.3
Simon, S.A.4
Lopez, D.5
Jia, Y.6
Wang, G.L.7
Meyers, B.C.8
Jacobsen, S.E.9
Pellegrini, M.10
-
24
-
-
84857730786
-
Trans-chromosomal methylation in Arabidopsis hybrids.
-
10.1073/pnas.1201043109, 3295253, 22331882
-
Greaves IK, Groszmann M, Ying H, Taylor JM, Peacock WJ, Dennis ES. Trans-chromosomal methylation in Arabidopsis hybrids. Proc Natl Acad Sci USA 2012, 109:3570-3575. 10.1073/pnas.1201043109, 3295253, 22331882.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 3570-3575
-
-
Greaves, I.K.1
Groszmann, M.2
Ying, H.3
Taylor, J.M.4
Peacock, W.J.5
Dennis, E.S.6
-
25
-
-
84860109530
-
Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids.
-
10.1105/tpc.111.094870, 3336129, 22438023
-
Shen H, He H, Li J, Chen W, Wang X, Guo L, Peng Z, He G, Zhong S, Qi Y, Terzaghi W, Deng XW. Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids. Plant Cell 2012, 24:875-892. 10.1105/tpc.111.094870, 3336129, 22438023.
-
(2012)
Plant Cell
, vol.24
, pp. 875-892
-
-
Shen, H.1
He, H.2
Li, J.3
Chen, W.4
Wang, X.5
Guo, L.6
Peng, Z.7
He, G.8
Zhong, S.9
Qi, Y.10
Terzaghi, W.11
Deng, X.W.12
-
26
-
-
70449588694
-
Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids.
-
10.1073/pnas.0907003106, 2757398, 19805056
-
Ha M, Lu J, Tian L, Ramachandran V, Kasschau KD, Chapman EJ, Carrington JC, Chen X, Wang XJ, Chen ZJ. Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proc Natl Acad Sci USA 2009, 106:17835-17840. 10.1073/pnas.0907003106, 2757398, 19805056.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 17835-17840
-
-
Ha, M.1
Lu, J.2
Tian, L.3
Ramachandran, V.4
Kasschau, K.D.5
Chapman, E.J.6
Carrington, J.C.7
Chen, X.8
Wang, X.J.9
Chen, Z.J.10
-
27
-
-
77958602989
-
Expression analysis of miRNAs and highly-expressed small RNAs in two rice subspecies and their reciprocal hybrids.
-
10.1111/j.1744-7909.2010.00985.x, 20977655
-
Chen F, He G, He H, Chen W, Zhu X, Liang M, Chen L, Deng XW. Expression analysis of miRNAs and highly-expressed small RNAs in two rice subspecies and their reciprocal hybrids. J Integr Plant Biol 2010, 52:971-980. 10.1111/j.1744-7909.2010.00985.x, 20977655.
-
(2010)
J Integr Plant Biol
, vol.52
, pp. 971-980
-
-
Chen, F.1
He, G.2
He, H.3
Chen, W.4
Zhu, X.5
Liang, M.6
Chen, L.7
Deng, X.W.8
-
28
-
-
84862979828
-
Repeat associated small RNAs vary among parents and following hybridization in maize.
-
10.1073/pnas.1202073109, 3387101, 22689990
-
Barber WT, Zhang W, Win H, Varala KK, Dorweiler JE, Hudson ME, Moose SP. Repeat associated small RNAs vary among parents and following hybridization in maize. Proc Natl Acad Sci USA 2012, 109:10444-10449. 10.1073/pnas.1202073109, 3387101, 22689990.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 10444-10449
-
-
Barber, W.T.1
Zhang, W.2
Win, H.3
Varala, K.K.4
Dorweiler, J.E.5
Hudson, M.E.6
Moose, S.P.7
-
29
-
-
79958231735
-
Wheat hybridization and polyploidization results in deregulation of small RNAs.
-
10.1534/genetics.111.128348, 3122319, 21467573
-
Kenan-Eichler M, Leshkowitz D, Tal L, Noor E, Melamed-Bessudo C, Feldman M, Levy AA. Wheat hybridization and polyploidization results in deregulation of small RNAs. Genetics 2011, 188:263-272. 10.1534/genetics.111.128348, 3122319, 21467573.
-
(2011)
Genetics
, vol.188
, pp. 263-272
-
-
Kenan-Eichler, M.1
Leshkowitz, D.2
Tal, L.3
Noor, E.4
Melamed-Bessudo, C.5
Feldman, M.6
Levy, A.A.7
-
30
-
-
84865587989
-
Deep sequencing and microarray hybridization identify conserved and species-specific microRNAs during somatic embryogenesis in hybrid Yellow Poplar.
-
10.1371/journal.pone.0043451, 3430688, 22952685
-
Li T, Chen J, Qiu S, Zhang Y, Wang P, Yang L, Lu Y, Shi J. Deep sequencing and microarray hybridization identify conserved and species-specific microRNAs during somatic embryogenesis in hybrid Yellow Poplar. PLoS One 2012, 7:e43451. 10.1371/journal.pone.0043451, 3430688, 22952685.
-
(2012)
PLoS One
, vol.7
-
-
Li, T.1
Chen, J.2
Qiu, S.3
Zhang, Y.4
Wang, P.5
Yang, L.6
Lu, Y.7
Shi, J.8
-
31
-
-
70450202132
-
The B73 maize genome: complexity, diversity, and dynamics.
-
10.1126/science.1178534, 19965430
-
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, et al. The B73 maize genome: complexity, diversity, and dynamics. Science 2009, 326:1112-1115. 10.1126/science.1178534, 19965430.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
Pasternak, S.6
Liang, C.7
Zhang, J.8
Fulton, L.9
Graves, T.A.10
Minx, P.11
Reily, A.D.12
Courtney, L.13
Kruchowski, S.S.14
Tomlinson, C.15
Strong, C.16
Delehaunty, K.17
Fronick, C.18
Courtney, B.19
Rock, S.M.20
Belter, E.21
Du, F.22
Kim, K.23
Abbott, R.M.24
Cotton, M.25
Levy, A.26
Marchetto, P.27
Ochoa, K.28
Jackson, S.M.29
Gillam, B.30
more..
-
32
-
-
33846839271
-
Heterosis associated gene expression in maize embryos 6 days after fertilization exhibits additive, dominant and overdominant pattern.
-
10.1007/s11103-006-9095-x, 17082872
-
Meyer S, Pospisil H, Scholten S. Heterosis associated gene expression in maize embryos 6 days after fertilization exhibits additive, dominant and overdominant pattern. Plant Mol Biol 2007, 63:381-391. 10.1007/s11103-006-9095-x, 17082872.
-
(2007)
Plant Mol Biol
, vol.63
, pp. 381-391
-
-
Meyer, S.1
Pospisil, H.2
Scholten, S.3
-
33
-
-
75849155012
-
Heterosis in early seed development: a comparative study of F1 embryo and endosperm tissues 6 days after fertilization.
-
10.1007/s00122-009-1207-y, 19915820
-
Jahnke S, Sarholz B, Thiemann A, Kuhr V, Gutierrez-Marcos JF, Geiger HH, Piepho HP, Scholten S. Heterosis in early seed development: a comparative study of F1 embryo and endosperm tissues 6 days after fertilization. Theor Appl Genet 2010, 120:389-400. 10.1007/s00122-009-1207-y, 19915820.
-
(2010)
Theor Appl Genet
, vol.120
, pp. 389-400
-
-
Jahnke, S.1
Sarholz, B.2
Thiemann, A.3
Kuhr, V.4
Gutierrez-Marcos, J.F.5
Geiger, H.H.6
Piepho, H.P.7
Scholten, S.8
-
34
-
-
33747735632
-
Genome-wide transcript analysis of maize hybrids: allelic additive gene expression and yield heterosis.
-
10.1007/s00122-006-0335-x, 16868764
-
Guo M, Rupe MA, Yang X, Crasta O, Zinselmeier C, Smith OS, Bowen B. Genome-wide transcript analysis of maize hybrids: allelic additive gene expression and yield heterosis. Theor Appl Genet 2006, 113:831-845. 10.1007/s00122-006-0335-x, 16868764.
-
(2006)
Theor Appl Genet
, vol.113
, pp. 831-845
-
-
Guo, M.1
Rupe, M.A.2
Yang, X.3
Crasta, O.4
Zinselmeier, C.5
Smith, O.S.6
Bowen, B.7
-
35
-
-
13744261166
-
Nonadditive gene expression in diploid and triploid hybrids of maize.
-
1448873, 15489529
-
Auger DL, Gray AD, Ream TS, Kato A, Coe EH, Birchler JA. Nonadditive gene expression in diploid and triploid hybrids of maize. Genetics 2005, 169:389-397. 1448873, 15489529.
-
(2005)
Genetics
, vol.169
, pp. 389-397
-
-
Auger, D.L.1
Gray, A.D.2
Ream, T.S.3
Kato, A.4
Coe, E.H.5
Birchler, J.A.6
-
36
-
-
33845614089
-
Comparative expression profiling in meristems of inbred-hybrid triplets of maize based on morphological investigations of heterosis for plant height.
-
Uzarowska A, Keller B, Piepho HP, Schwarz G, Ingvardsen C, Wenzel G, Lubberstedt T. Comparative expression profiling in meristems of inbred-hybrid triplets of maize based on morphological investigations of heterosis for plant height. Plant Mol Biol 2007, 63:21-34.
-
(2007)
Plant Mol Biol
, vol.63
, pp. 21-34
-
-
Uzarowska, A.1
Keller, B.2
Piepho, H.P.3
Schwarz, G.4
Ingvardsen, C.5
Wenzel, G.6
Lubberstedt, T.7
-
37
-
-
33646486694
-
All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents.
-
10.1073/pnas.0510430103, 1447595, 16641103
-
Swanson-Wagner RA, Jia Y, DeCook R, Borsuk LA, Nettleton D, Schnable PS. All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. Proc Natl Acad Sci USA 2006, 103:6805-6810. 10.1073/pnas.0510430103, 1447595, 16641103.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6805-6810
-
-
Swanson-Wagner, R.A.1
Jia, Y.2
DeCook, R.3
Borsuk, L.A.4
Nettleton, D.5
Schnable, P.S.6
-
38
-
-
43149100157
-
Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis.
-
10.1186/1471-2229-8-33, 2365949, 18402703
-
Stupar RM, Gardiner JM, Oldre AG, Haun WJ, Chandler VL, Springer NM. Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis. BMC Plant Biol 2008, 8:33. 10.1186/1471-2229-8-33, 2365949, 18402703.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 33
-
-
Stupar, R.M.1
Gardiner, J.M.2
Oldre, A.G.3
Haun, W.J.4
Chandler, V.L.5
Springer, N.M.6
-
39
-
-
52049125924
-
Comparison of maize (Zea mays L.) F1-hybrid and parental inbred line primary root transcriptomes suggests organ-specific patterns of nonadditive gene expression and conserved expression trends.
-
10.1534/genetics.108.088278, 2475732, 18562640
-
Hoecker N, Keller B, Muthreich N, Chollet D, Descombes P, Piepho HP, Hochholdinger F. Comparison of maize (Zea mays L.) F1-hybrid and parental inbred line primary root transcriptomes suggests organ-specific patterns of nonadditive gene expression and conserved expression trends. Genetics 2008, 179:1275-1283. 10.1534/genetics.108.088278, 2475732, 18562640.
-
(2008)
Genetics
, vol.179
, pp. 1275-1283
-
-
Hoecker, N.1
Keller, B.2
Muthreich, N.3
Chollet, D.4
Descombes, P.5
Piepho, H.P.6
Hochholdinger, F.7
-
40
-
-
75849125815
-
Molecular dissection of heterosis manifestation during early maize root development.
-
10.1007/s00122-009-1082-6, 19526205
-
Paschold A, Marcon C, Hoecker N, Hochholdinger F. Molecular dissection of heterosis manifestation during early maize root development. Theor Appl Genet 2010, 120:383-388. 10.1007/s00122-009-1082-6, 19526205.
-
(2010)
Theor Appl Genet
, vol.120
, pp. 383-388
-
-
Paschold, A.1
Marcon, C.2
Hoecker, N.3
Hochholdinger, F.4
-
41
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
-
10.1186/gb-2009-10-3-r25, 2690996, 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10:R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
42
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS).
-
10.1186/gb-2008-9-9-r137, 2592715, 18798982
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol 2008, 9:R137. 10.1186/gb-2008-9-9-r137, 2592715, 18798982.
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
43
-
-
84863932365
-
Reshaping of the maize transcriptome by domestication.
-
10.1073/pnas.1201961109, 3406829, 22753482
-
Swanson-Wagner R, Briskine R, Schaefer R, Hufford MB, Ross-Ibarra J, Myers CL, Tiffin P, Springer NM. Reshaping of the maize transcriptome by domestication. Proc Natl Acad Sci USA 2012, 109:11878-11883. 10.1073/pnas.1201961109, 3406829, 22753482.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 11878-11883
-
-
Swanson-Wagner, R.1
Briskine, R.2
Schaefer, R.3
Hufford, M.B.4
Ross-Ibarra, J.5
Myers, C.L.6
Tiffin, P.7
Springer, N.M.8
-
44
-
-
77954299992
-
AgriGO: a GO analysis toolkit for the agricultural community.
-
10.1093/nar/gkq310, 2896167, 20435677
-
Du Z, Zhou X, Ling Y, Zhang Z, Su Z. agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res 2010, 38:W64-70. 10.1093/nar/gkq310, 2896167, 20435677.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Du, Z.1
Zhou, X.2
Ling, Y.3
Zhang, Z.4
Su, Z.5
-
45
-
-
33747866029
-
Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid.
-
10.1534/genetics.106.060699, 1569691, 16702414
-
Stupar RM, Springer NM. Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid. Genetics 2006, 173:2199-2210. 10.1534/genetics.106.060699, 1569691, 16702414.
-
(2006)
Genetics
, vol.173
, pp. 2199-2210
-
-
Stupar, R.M.1
Springer, N.M.2
-
46
-
-
42149163447
-
Genome-wide allele-specific expression analysis using massively parallel signature sequencing (MPSS) reveals cis- and trans-effects on gene expression in maize hybrid meristem tissue.
-
10.1007/s11103-008-9290-z, 18224447
-
Guo M, Yang S, Rupe M, Hu B, Bickel DR, Arthur L, Smith O. Genome-wide allele-specific expression analysis using massively parallel signature sequencing (MPSS) reveals cis- and trans-effects on gene expression in maize hybrid meristem tissue. Plant Mol Biol 2008, 66:551-563. 10.1007/s11103-008-9290-z, 18224447.
-
(2008)
Plant Mol Biol
, vol.66
, pp. 551-563
-
-
Guo, M.1
Yang, S.2
Rupe, M.3
Hu, B.4
Bickel, D.R.5
Arthur, L.6
Smith, O.7
-
47
-
-
33947236065
-
Genome-wide profiling and analysis of Arabidopsis siRNAs.
-
10.1371/journal.pbio.0050057, 1820830, 17298187
-
Kasschau KD, Fahlgren N, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Carrington JC. Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol 2007, 5:e57. 10.1371/journal.pbio.0050057, 1820830, 17298187.
-
(2007)
PLoS Biol
, vol.5
-
-
Kasschau, K.D.1
Fahlgren, N.2
Chapman, E.J.3
Sullivan, C.M.4
Cumbie, J.S.5
Givan, S.A.6
Carrington, J.C.7
-
48
-
-
58249105076
-
Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids.
-
10.1038/nature07523, 2679702, 19029881
-
Ni Z, Kim ED, Ha M, Lackey E, Liu J, Zhang Y, Sun Q, Chen ZJ. Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids. Nature 2009, 457:327-331. 10.1038/nature07523, 2679702, 19029881.
-
(2009)
Nature
, vol.457
, pp. 327-331
-
-
Ni, Z.1
Kim, E.D.2
Ha, M.3
Lackey, E.4
Liu, J.5
Zhang, Y.6
Sun, Q.7
Chen, Z.J.8
-
49
-
-
77956795823
-
Heterosis.
-
10.1105/tpc.110.076133, 2929104, 20622146
-
Birchler JA, Yao H, Chudalayandi S, Vaiman D, Veitia RA. Heterosis. Plant Cell 2010, 22:2105-2112. 10.1105/tpc.110.076133, 2929104, 20622146.
-
(2010)
Plant Cell
, vol.22
, pp. 2105-2112
-
-
Birchler, J.A.1
Yao, H.2
Chudalayandi, S.3
Vaiman, D.4
Veitia, R.A.5
-
50
-
-
79551529430
-
A unifying theory for general multigenic heterosis: energy efficiency, protein metabolism, and implications for molecular breeding.
-
10.1111/j.1469-8137.2010.03574.x, 21166808
-
Goff SA. A unifying theory for general multigenic heterosis: energy efficiency, protein metabolism, and implications for molecular breeding. New Phytol 2011, 189:923-937. 10.1111/j.1469-8137.2010.03574.x, 21166808.
-
(2011)
New Phytol
, vol.189
, pp. 923-937
-
-
Goff, S.A.1
-
51
-
-
37249012276
-
Nucleosome destabilization in the epigenetic regulation of gene expression.
-
Henikoff S. Nucleosome destabilization in the epigenetic regulation of gene expression. Nat Rev Genet 2008, 9:15-26.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 15-26
-
-
Henikoff, S.1
-
52
-
-
58149522909
-
Making copies of chromatin: the challenge of nucleosomal organization and epigenetic information.
-
10.1016/j.tcb.2008.10.002, 19027300
-
Corpet A, Almouzni G. Making copies of chromatin: the challenge of nucleosomal organization and epigenetic information. Trends Cell Biol 2009, 19:29-41. 10.1016/j.tcb.2008.10.002, 19027300.
-
(2009)
Trends Cell Biol
, vol.19
, pp. 29-41
-
-
Corpet, A.1
Almouzni, G.2
-
53
-
-
73649118150
-
Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs.
-
10.1371/journal.pgen.1000737, 2774947, 19936292
-
Jia Y, Lisch DR, Ohtsu K, Scanlon MJ, Nettleton D, Schnable PS. Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs. PLoS Genet 2009, 5:e1000737. 10.1371/journal.pgen.1000737, 2774947, 19936292.
-
(2009)
PLoS Genet
, vol.5
-
-
Jia, Y.1
Lisch, D.R.2
Ohtsu, K.3
Scanlon, M.J.4
Nettleton, D.5
Schnable, P.S.6
-
54
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome.
-
Slotkin RK, Martienssen R. Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 2007, 8:272-285.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
55
-
-
84872051484
-
Spreading of heterochromatin is limited to specific families of maize retrotransposons.
-
10.1371/journal.pgen.1003127, 3521669, 23271981
-
Eichten SR, Ellis NA, Makarevitch I, Yeh C-T, Gent JI, Guo L, McGinnis KM, Zhang X, Schnable PS, Vaughn MW, Dawe RK, Springer NM. Spreading of heterochromatin is limited to specific families of maize retrotransposons. PLoS Genet 2012, 8:e1003127. 10.1371/journal.pgen.1003127, 3521669, 23271981.
-
(2012)
PLoS Genet
, vol.8
-
-
Eichten, S.R.1
Ellis, N.A.2
Makarevitch, I.3
Yeh, C.-T.4
Gent, J.I.5
Guo, L.6
McGinnis, K.M.7
Zhang, X.8
Schnable, P.S.9
Vaughn, M.W.10
Dawe, R.K.11
Springer, N.M.12
-
56
-
-
79961001437
-
Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis.
-
10.1093/nar/gkr324, 3167636, 21586580
-
Ahmed I, Sarazin A, Bowler C, Colot V, Quesneville H. Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis. Nucleic Acids Res 2011, 39:6919-6931. 10.1093/nar/gkr324, 3167636, 21586580.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 6919-6931
-
-
Ahmed, I.1
Sarazin, A.2
Bowler, C.3
Colot, V.4
Quesneville, H.5
-
57
-
-
23744483843
-
Profiling histone modification patterns in plants using genomic tiling microarrays.
-
10.1038/nmeth0305-213, 16163802
-
Gendrel AV, Lippman Z, Martienssen R, Colot V. Profiling histone modification patterns in plants using genomic tiling microarrays. Nat Methods 2005, 2:213-218. 10.1038/nmeth0305-213, 16163802.
-
(2005)
Nat Methods
, vol.2
, pp. 213-218
-
-
Gendrel, A.V.1
Lippman, Z.2
Martienssen, R.3
Colot, V.4
-
58
-
-
41349114789
-
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide.
-
10.1016/j.cell.2008.02.034, 2981139, 18342361
-
Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide. Cell 2008, 133:116-127. 10.1016/j.cell.2008.02.034, 2981139, 18342361.
-
(2008)
Cell
, vol.133
, pp. 116-127
-
-
Mi, S.1
Cai, T.2
Hu, Y.3
Chen, Y.4
Hodges, E.5
Ni, F.6
Wu, L.7
Li, S.8
Zhou, H.9
Long, C.10
Chen, S.11
Hannon, G.J.12
Qi, Y.13
|