Gene targeting using the Agrobacterium tumefaciens-mediated CRISPR-Cas system in rice

Rice

Volumn 7, Issue 1, 2014, Pages

  Xu, Rongfang ^a,b   Li, Hao ^a   Qin, Ruiying ^a   Wang, Lu ^a   Li, Li ^a,b   Wei, Pengcheng ^a   Yang, Jianbo ^a  

^a RICE RESEARCH INSTITUTE   (China)

^b ANHUI UNIVERSITY   (China)

Author keywords

Agrobacterium; CRISPR Cas9; Gene targeting; Genome editing; Rice; Stable transformation

Indexed keywords

EID: 84938551842     PISSN: 19398425     EISSN: 19398433     Source Type: Journal    
DOI: 10.1186/s12284-014-0005-6     Document Type: Article

References (22)

1. Belhaj K, Chaparro-Garcia A, Kamoun S, Nekrasov V (2013) Plant genome editing made easy: targeted mutagenesis in model and crop plants using the CRISPR/Cas system. Plant Methods 9(1):39
2. Chen K, Gao C (2013) TALENs: customizable molecular DNA scissors for genome engineering of plants. J Genet Genomics 40(6):271–279. doi:http://dx.doi.org/10.1016/j.jgg.2013.03.009
3. Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, Hsu PD, Wu X, Jiang W, Marraffini LA, Zhang F (2013) Multiplex genome engineering using CRISPR/Cas systems. Science 339(6121):819–823. doi:10.1126/science.1231143
4. Dai S, Zheng P, Marmey P, Zhang S, Tian W, Chen S, Beachy R, Fauquet C (2001) Comparative analysis of transgenic rice plants obtained by Agrobacterium-mediated transformation and particle bombardment. Mol Breed 7(1):25–33. doi:10.1023/a:1009687511633
5. Feng Z, Zhang B, Ding W, Liu X, Yang D-L, Wei P, Cao F, Zhu S, Zhang F, Mao Y, Zhu J-K (2013) Efficient genome editing in plants using a CRISPR/Cas system. Cell Res ᅟ:ᅟ. doi:10.1038/cr.2013.114
6. Gratz SJ, Cummings AM, Nguyen JN, Hamm DC, Donohue LK, Harrison MM, Wildonger J, O’Connor-Giles KM (2013) Genome engineering of Drosophila with the CRISPR RNA-guided Cas9 nuclease. Genetics ᅟ:ᅟ. doi:10.1534/genetics.113.152710
7. Hsu PD, Scott DA, Weinstein JA, Ran FA, Konermann S, Agarwala V, Li Y, Fine EJ, Wu X, Shalem O, Cradick TJ, Marraffini LA, Bao G, Zhang F (2013) DNA targeting specificity of RNA-guided Cas9 nucleases. Nat Biotech 31(9):827–832. doi:10.1038/nbt.2647. http://www.nature.com/nbt/journal/v31/n9/abs/nbt.2647.html#supplementary-information
8. Jiang W, Zhou H, Bi H, Fromm M, Yang B, Weeks DP (2013) Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice. Nucleic Acids Res 41(20):e188. doi:10.1093/nar/gkt780
9. Li D, Qiu Z, Shao Y, Chen Y, Guan Y, Liu M, Li Y, Gao N, Wang L, Lu X, Zhao Y, Liu M (2013a) Heritable gene targeting in the mouse and rat using a CRISPR-Cas system. Nat Biotech 31(8):681–683. doi:10.1038/nbt.2661. http://www.nature.com/nbt/journal/v31/n8/full/nbt.2661.html#supplementary-information
10. Li J-F, Norville JE, Aach J, McCormack M, Zhang D, Bush J, Church GM, Sheen J (2013b) Multiplex and homologous recombination-mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9. Nat Biotech 31(8):688–691. doi:10.1038/nbt.2654. http://www.nature.com/nbt/journal/v31/n8/full/nbt.2654.html#supplementary-information
11. Li T, Liu B, Spalding MH, Weeks DP, Yang B (2012) High-efficiency TALEN-based gene editing produces disease-resistant rice. Nat Biotech 30(5):390–392. http://www.nature.com/nbt/journal/v30/n5/abs/nbt.2199.html#supplementary-information
12. Mali P, Yang L, Esvelt KM, Aach J, Guell M, DiCarlo JE, Norville JE, Church GM (2013) RNA-guided human genome engineering via Cas9. Science 339(6121):823–826. doi:10.1126/science.1232033
13. Mao Y, Zhang H, Xu N, Zhang B, Gao F, J-k Z (2013) Application of the CRISPR-Cas system for efficient genome engineering in plants. Mol Plant ᅟ:ᅟ. doi:10.1093/mp/sst121
14. Miao J, Guo D, Zhang J, Huang Q, Qin G, Zhang X, Wan J, Gu H, Qu L-J (2013) Targeted mutagenesis in rice using CRISPR-Cas system. Cell Res 23(10):1233–1236. doi:10.1038/cr.2013.123
15. Nekrasov V, Staskawicz B, Weigel D, Jones JDG, Kamoun S (2013) Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease. Nat Biotech 31(8):691–693. doi:10.1038/nbt.2655. http://www.nature.com/nbt/journal/v31/n8/full/nbt.2655.html#supplementary-information
16. Pan G, Zhang X, Liu K, Zhang J, Wu X, Zhu J, Tu J (2006) Map-based cloning of a novel rice cytochrome P450 gene CYP81A6 that confers resistance to two different classes of herbicides. Plant Mol Biol 61(6):933–943. doi:10.1007/s11103-006-0058-z
17. Shan Q, Wang Y, Chen K, Liang Z, Li J, Zhang Y, Zhang K, Liu J, Voytas DF, Zheng X, Zhang Y, Gao C (2013a) Rapid and efficient gene modification in rice and brachypodium using TALENs. Mol Plant ᅟ:ᅟ. doi:10.1093/mp/sss162
18. Shan Q, Wang Y, Li J, Zhang Y, Chen K, Liang Z, Zhang K, Liu J, Xi JJ, Qiu J-L, Gao C (2013b) Targeted genome modification of crop plants using a CRISPR-Cas system. Nat Biotech 31(8):686–688. doi:10.1038/nbt.2650. http://www.nature.com/nbt/journal/v31/n8/full/nbt.2650.html#supplementary-information
19. Wang H, Yang H, Shivalila Chikdu S, Dawlaty Meelad M, Cheng Albert W, Zhang F, Jaenisch R (2013) One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell 153(4):910–918
20. Xiao A, Wang Z, Hu Y, Wu Y, Luo Z, Yang Z, Zu Y, Li W, Huang P, Tong X, Zhu Z, Lin S, Zhang B (2013) Chromosomal deletions and inversions mediated by TALENs and CRISPR/Cas in zebrafish. Nucleic Acids Res ᅟ:ᅟ. doi:10.1093/nar/gkt464
21. Xie K, Yang Y (2013) RNA-guided genome editing in plants using a CRISPR-cas system. Mol Plant ᅟ:ᅟ. doi:10.1093/mp/sst119
22. Zhang Y, Zhang F, Li X, Baller JA, Qi Y, Starker CG, Bogdanove AJ, Voytas DF (2013) Transcription activator-like effector nucleases enable efficient plant genome engineering. Plant Physiol 161(1):20–27. doi:10.1104/pp.112.205179