-
1
-
-
0035865087
-
A physical map of the human genome
-
J.D. McPherson, M. Marra, L. Hillier, R.H. Waterston, A. Chinwalla, J. Wallis, and et al. A physical map of the human genome Nature 409 2001 934 941 10.1038/35057157
-
(2001)
Nature
, vol.409
, pp. 934-941
-
-
McPherson, J.D.1
Marra, M.2
Hillier, L.3
Waterston, R.H.4
Chinwalla, A.5
Wallis, J.6
-
2
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
International Human Genome Sequencing Consortium Finishing the euchromatic sequence of the human genome Nature 431 2004 931 945 10.1038/nature03001
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
3
-
-
84897065535
-
The strategy, organization, and progress of the HUPO human proteome project
-
G.S. Omenn The strategy, organization, and progress of the HUPO human proteome project J. Proteom. 100 2014 3 7 10.1016/j.jprot.2013.10.012
-
(2014)
J. Proteom.
, vol.100
, pp. 3-7
-
-
Omenn, G.S.1
-
4
-
-
84874625369
-
Proteoform: a single term describing protein complexity
-
L.M. Smith, and N.L. Kelleher Proteoform: a single term describing protein complexity Nat. Methods 10 2013 186 187 10.1038/nmeth.2369
-
(2013)
Nat. Methods
, vol.10
, pp. 186-187
-
-
Smith, L.M.1
Kelleher, N.L.2
-
5
-
-
84874074018
-
The biology/disease-driven human proteome project (B/D-HPP): enabling protein research for the life sciences community
-
R. Aebersold, G.D. Bader, A.M. Edwards, J.E. van Eyk, M. Kussmann, J. Qin, and et al. The biology/disease-driven human proteome project (B/D-HPP): enabling protein research for the life sciences community J. Proteom. Res. 12 2013 23 27 10.1021/pr301151m
-
(2013)
J. Proteom. Res.
, vol.12
, pp. 23-27
-
-
Aebersold, R.1
Bader, G.D.2
Edwards, A.M.3
Van Eyk, J.E.4
Kussmann, M.5
Qin, J.6
-
6
-
-
43049127826
-
PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
-
E.W. Deutsch, H. Lam, and R. Aebersold PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows EMBO Rep. 9 2008 429 434 10.1038/embor.2008.56
-
(2008)
EMBO Rep.
, vol.9
, pp. 429-434
-
-
Deutsch, E.W.1
Lam, H.2
Aebersold, R.3
-
7
-
-
33644876912
-
The PeptideAtlas project
-
F. Desiere, E.W. Deutsch, N.L. King, A.I. Nesvizhskii, P. Mallick, J. Eng, and et al. The PeptideAtlas project Nucleic Acids Res. 34 2006 D655 D658 10.1093/nar/gkj040
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D655-D658
-
-
Desiere, F.1
Deutsch, E.W.2
King, N.L.3
Nesvizhskii, A.I.4
Mallick, P.5
Eng, J.6
-
8
-
-
29244477844
-
A human protein atlas for normal and cancer tissues based on antibody proteomics
-
M. Uhlén, E. Björling, C. Agaton, C.A.-K. Szigyarto, B. Amini, E. Andersen, and et al. A human protein atlas for normal and cancer tissues based on antibody proteomics Mol. Cell. Proteom. MCP 4 2005 1920 1932 10.1074/mcp.M500279-MCP200
-
(2005)
Mol. Cell. Proteom. MCP
, vol.4
, pp. 1920-1932
-
-
Uhlén, M.1
Björling, E.2
Agaton, C.3
Szigyarto, C.A.-K.4
Amini, B.5
Andersen, E.6
-
9
-
-
84920269464
-
Proteomics. Tissue-based map of the human proteome
-
M. Uhlén, L. Fagerberg, B.M. Hallström, C. Lindskog, P. Oksvold, A. Mardinoglu, and et al. Proteomics. Tissue-based map of the human proteome Science 347 2015 1260419 10.1126/science.1260419
-
(2015)
Science
, vol.347
, pp. 1260419
-
-
Uhlén, M.1
Fagerberg, L.2
Hallström, B.M.3
Lindskog, C.4
Oksvold, P.5
Mardinoglu, A.6
-
10
-
-
84901599553
-
A draft map of the human proteome
-
M.-S. Kim, S.M. Pinto, D. Getnet, R.S. Nirujogi, S.S. Manda, R. Chaerkady, and et al. A draft map of the human proteome Nature 509 2014 575 581 10.1038/nature13302
-
(2014)
Nature
, vol.509
, pp. 575-581
-
-
Kim, M.-S.1
Pinto, S.M.2
Getnet, D.3
Nirujogi, R.S.4
Manda, S.S.5
Chaerkady, R.6
-
11
-
-
84901611036
-
Mass-spectrometry-based draft of the human proteome
-
M. Wilhelm, J. Schlegl, H. Hahne, A. Moghaddas Gholami, M. Lieberenz, M.M. Savitski, and et al. Mass-spectrometry-based draft of the human proteome Nature 509 2014 582 587 10.1038/nature13319
-
(2014)
Nature
, vol.509
, pp. 582-587
-
-
Wilhelm, M.1
Schlegl, J.2
Hahne, H.3
Moghaddas Gholami, A.4
Lieberenz, M.5
Savitski, M.M.6
-
12
-
-
84941060754
-
The neXtProt knowledgebase on human proteins: current status
-
P. Gaudet, P.-A. Michel, M. Zahn-Zabal, I. Cusin, P.D. Duek, O. Evalet, and et al. The neXtProt knowledgebase on human proteins: current status Nucleic Acids Res. 43 2015 D764 D770 10.1093/nar/gku1178
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D764-D770
-
-
Gaudet, P.1
Michel, P.-A.2
Zahn-Zabal, M.3
Cusin, I.4
Duek, P.D.5
Evalet, O.6
-
13
-
-
84936804421
-
The Impact II, a very high-resolution quadrupole time-of-flight instrument (QTOF) for deep shotgun proteomics
-
S. Beck, A. Michalski, O. Raether, M. Lubeck, S. Kaspar, N. Goedecke, and et al. The Impact II, a very high-resolution quadrupole time-of-flight instrument (QTOF) for deep shotgun proteomics Mol. Cell. Proteom. MCP 14 2015 2014 2029 10.1074/mcp.M114.047407
-
(2015)
Mol. Cell. Proteom. MCP
, vol.14
, pp. 2014-2029
-
-
Beck, S.1
Michalski, A.2
Raether, O.3
Lubeck, M.4
Kaspar, S.5
Goedecke, N.6
-
14
-
-
84928310668
-
Benchmarking multiple fragmentation methods on an orbitrap fusion for top-down phospho-proteoform characterization
-
A.M. Brunner, P. Lössl, F. Liu, R. Huguet, C. Mullen, M. Yamashita, and et al. Benchmarking multiple fragmentation methods on an orbitrap fusion for top-down phospho-proteoform characterization Anal. Chem. 87 2015 4152 4158 10.1021/acs.analchem.5b00162
-
(2015)
Anal. Chem.
, vol.87
, pp. 4152-4158
-
-
Brunner, A.M.1
Lössl, P.2
Liu, F.3
Huguet, R.4
Mullen, C.5
Yamashita, M.6
-
15
-
-
0001644020
-
The human plasma proteome: history, character, and diagnostic prospects
-
N.L. Anderson, and N.G. Anderson The human plasma proteome: history, character, and diagnostic prospects Mol. Cell. Proteom. MCP 1 2002 845 867
-
(2002)
Mol. Cell. Proteom. MCP
, vol.1
, pp. 845-867
-
-
Anderson, N.L.1
Anderson, N.G.2
-
16
-
-
79956260119
-
Immunodepletion of albumin and immunoglobulin G from bovine plasma
-
S. Faulkner, G. Elia, M. Hillard, P. O'Boyle, M. Dunn, and D. Morris Immunodepletion of albumin and immunoglobulin G from bovine plasma Proteomics 11 2011 2329 2335 10.1002/pmic.201000364
-
(2011)
Proteomics
, vol.11
, pp. 2329-2335
-
-
Faulkner, S.1
Elia, G.2
Hillard, M.3
O'Boyle, P.4
Dunn, M.5
Morris, D.6
-
17
-
-
48849098966
-
The ProteoMiner in the proteomic arena: a non-depleting tool for discovering low-abundance species
-
E. Boschetti, and P.G. Righetti The ProteoMiner in the proteomic arena: a non-depleting tool for discovering low-abundance species J. Proteom. 71 2008 255 264 10.1016/j.jprot.2008.05.002
-
(2008)
J. Proteom.
, vol.71
, pp. 255-264
-
-
Boschetti, E.1
Righetti, P.G.2
-
18
-
-
77956304093
-
Mass spectrometry in high-throughput proteomics: ready for the big time
-
T. Nilsson, M. Mann, R. Aebersold, J.R. Yates, A. Bairoch, and J.J.M. Bergeron Mass spectrometry in high-throughput proteomics: ready for the big time Nat. Methods 7 2010 681 685 10.1038/nmeth0910-681
-
(2010)
Nat. Methods
, vol.7
, pp. 681-685
-
-
Nilsson, T.1
Mann, M.2
Aebersold, R.3
Yates, J.R.4
Bairoch, A.5
Bergeron, J.J.M.6
-
19
-
-
27644555055
-
Interpretation of shotgun proteomic data: the protein inference problem
-
A.I. Nesvizhskii, and R. Aebersold Interpretation of shotgun proteomic data: the protein inference problem Mol. Cell. Proteom. MCP 4 2005 1419 1440 10.1074/mcp.R500012-MCP200
-
(2005)
Mol. Cell. Proteom. MCP
, vol.4
, pp. 1419-1440
-
-
Nesvizhskii, A.I.1
Aebersold, R.2
-
20
-
-
84896969045
-
Annotating N termini for the human proteome project: N termini and Nα-acetylation status differentiate stable cleaved protein species from degradation remnants in the human erythrocyte proteome
-
P.F. Lange, P.F. Huesgen, K. Nguyen, and C.M. Overall Annotating N termini for the human proteome project: N termini and Nα-acetylation status differentiate stable cleaved protein species from degradation remnants in the human erythrocyte proteome J. Proteom. Res. 13 2014 2028 2044 10.1021/pr401191w
-
(2014)
J. Proteom. Res.
, vol.13
, pp. 2028-2044
-
-
Lange, P.F.1
Huesgen, P.F.2
Nguyen, K.3
Overall, C.M.4
-
21
-
-
84919472207
-
TAILS N-terminomics of human platelets reveals pervasive metalloproteinase-dependent proteolytic processing in storage
-
A. Prudova, K. Serrano, U. Eckhard, N. Fortelny, D.V. Devine, and C.M. Overall TAILS N-terminomics of human platelets reveals pervasive metalloproteinase-dependent proteolytic processing in storage Blood 124 2014 e49 e60 10.1182/blood-2014-04-569640
-
(2014)
Blood
, vol.124
, pp. e49-e60
-
-
Prudova, A.1
Serrano, K.2
Eckhard, U.3
Fortelny, N.4
Devine, D.V.5
Overall, C.M.6
-
22
-
-
84941051862
-
The human dental pulp proteome and N-terminome: levering the unexplored potential of semitryptic peptides enriched by TAILS to identify missing proteins in the human proteome project in underexplored tissues
-
U. Eckhard, G. Marino, S.R. Abbey, G. Tharmarajah, I. Matthew, and C.M. Overall The human dental pulp proteome and N-terminome: levering the unexplored potential of semitryptic peptides enriched by TAILS to identify missing proteins in the human proteome project in underexplored tissues J. Proteom. Res. 2015 10.1021/acs.jproteome.5b00579
-
(2015)
J. Proteom. Res.
-
-
Eckhard, U.1
Marino, G.2
Abbey, S.R.3
Tharmarajah, G.4
Matthew, I.5
Overall, C.M.6
-
23
-
-
0038333588
-
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
-
K. Gevaert, M. Goethals, L. Martens, J. Van Damme, A. Staes, G.R. Thomas, and et al. Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides Nat. Biotechnol. 21 2003 566 569 10.1038/nbt810
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 566-569
-
-
Gevaert, K.1
Goethals, M.2
Martens, L.3
Van Damme, J.4
Staes, A.5
Thomas, G.R.6
-
24
-
-
84879896413
-
Improved N(α)-acetylated peptide enrichment following dimethyl labeling and SCX
-
S.-H. Chen, C.-R. Chen, S.-H. Chen, D.-T. Li, and J.-L. Hsu Improved N(α)-acetylated peptide enrichment following dimethyl labeling and SCX J. Proteom. Res. 12 2013 3277 3287 10.1021/pr400127j
-
(2013)
J. Proteom. Res.
, vol.12
, pp. 3277-3287
-
-
Chen, S.-H.1
Chen, C.-R.2
Chen, S.-H.3
Li, D.-T.4
Hsu, J.-L.5
-
25
-
-
85006467151
-
An improved workflow for quantitative N-terminal charge-based fractional diagonal chromatography (ChaFRADIC) to study proteolytic events in Arabidopsis thaliana
-
A.S. Venne, F.A. Solari, F. Faden, T. Paretti, N. Dissmeyer, and R.P. Zahedi An improved workflow for quantitative N-terminal charge-based fractional diagonal chromatography (ChaFRADIC) to study proteolytic events in Arabidopsis thaliana Proteomics 2015 10.1002/pmic.201500014
-
(2015)
Proteomics
-
-
Venne, A.S.1
Solari, F.A.2
Faden, F.3
Paretti, T.4
Dissmeyer, N.5
Zahedi, R.P.6
-
26
-
-
77749320923
-
Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products
-
O. Kleifeld, A. Doucet, U. auf dem Keller, A. Prudova, O. Schilling, R.K. Kainthan, and et al. Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products Nat. Biotechnol. 28 2010 281 288 10.1038/nbt.1611
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 281-288
-
-
Kleifeld, O.1
Doucet, A.2
Auf Dem Keller, U.3
Prudova, A.4
Schilling, O.5
Kainthan, R.K.6
-
27
-
-
77951134556
-
Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics
-
A. Prudova, U. auf dem Keller, G.S. Butler, and C.M. Overall Multiplex N-terminome analysis of MMP-2 and MMP-9 substrate degradomes by iTRAQ-TAILS quantitative proteomics Mol. Cell. Proteom. MCP 9 2010 894 911 10.1074/mcp.M000050-MCP201
-
(2010)
Mol. Cell. Proteom. MCP
, vol.9
, pp. 894-911
-
-
Prudova, A.1
Auf Dem Keller, U.2
Butler, G.S.3
Overall, C.M.4
-
28
-
-
84901418451
-
Network analyses reveal pervasive functional regulation between proteases in the human protease web
-
N. Fortelny, J.H. Cox, R. Kappelhoff, A.E. Starr, P.F. Lange, P. Pavlidis, and et al. Network analyses reveal pervasive functional regulation between proteases in the human protease web PLoS Biol. 12 2014 e1001869 10.1371/journal.pbio.1001869
-
(2014)
PLoS Biol.
, vol.12
-
-
Fortelny, N.1
Cox, J.H.2
Kappelhoff, R.3
Starr, A.E.4
Lange, P.F.5
Pavlidis, P.6
-
29
-
-
84872593231
-
Systems-level analysis of proteolytic events in increased vascular permeability and complement activation in skin inflammation
-
U. auf dem Keller, A. Prudova, U. Eckhard, B. Fingleton, and C.M. Overall Systems-level analysis of proteolytic events in increased vascular permeability and complement activation in skin inflammation Sci. Signal 6 2013 rs2 10.1126/scisignal.2003512
-
(2013)
Sci. Signal
, vol.6
, pp. rs2
-
-
Auf Dem Keller, U.1
Prudova, A.2
Eckhard, U.3
Fingleton, B.4
Overall, C.M.5
-
30
-
-
84919840870
-
Macrophage matrix metalloproteinase-12 dampens inflammation and neutrophil influx in arthritis
-
C.L. Bellac, A. Dufour, M.J. Krisinger, A. Loonchanta, A.E. Starr, U. Auf dem Keller, and et al. Macrophage matrix metalloproteinase-12 dampens inflammation and neutrophil influx in arthritis Cell Rep. 9 2014 618 632 10.1016/j.celrep.2014.09.006
-
(2014)
Cell Rep.
, vol.9
, pp. 618-632
-
-
Bellac, C.L.1
Dufour, A.2
Krisinger, M.J.3
Loonchanta, A.4
Starr, A.E.5
Auf Dem Keller, U.6
-
31
-
-
80053404377
-
Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates
-
O. Kleifeld, A. Doucet, A. Prudova, U. auf dem Keller, M. Gioia, J.N. Kizhakkedathu, and et al. Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates Nat. Protoc. 6 2011 1578 1611 10.1038/nprot.2011.382
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1578-1611
-
-
Kleifeld, O.1
Doucet, A.2
Prudova, A.3
Auf Dem Keller, U.4
Gioia, M.5
Kizhakkedathu, J.N.6
-
32
-
-
84883792762
-
Novel highly sensitive, specific, and straightforward strategy for comprehensive N-terminal proteomics reveals unknown substrates of the mitochondrial peptidase Icp55
-
A.S. Venne, F.-N. Vögtle, C. Meisinger, A. Sickmann, and R.P. Zahedi Novel highly sensitive, specific, and straightforward strategy for comprehensive N-terminal proteomics reveals unknown substrates of the mitochondrial peptidase Icp55 J. Proteom. Res. 12 2013 3823 3830 10.1021/pr400435d
-
(2013)
J. Proteom. Res.
, vol.12
, pp. 3823-3830
-
-
Venne, A.S.1
Vögtle, F.-N.2
Meisinger, C.3
Sickmann, A.4
Zahedi, R.P.5
-
33
-
-
85006380073
-
Enrichment of protein N-termini by charge reversal of internal peptides
-
Z.W. Lai, A. Gomez-Auli, E.J. Keller, B. Mayer, M.L. Biniossek, and O. Schilling Enrichment of protein N-termini by charge reversal of internal peptides Proteomics 2015 10.1002/pmic.201500023
-
(2015)
Proteomics
-
-
Lai, Z.W.1
Gomez-Auli, A.2
Keller, E.J.3
Mayer, B.4
Biniossek, M.L.5
Schilling, O.6
-
34
-
-
73349138618
-
Global profiling of protease cleavage sites by chemoselective labeling of protein N-termini
-
G. Xu, S.B.Y. Shin, and S.R. Jaffrey Global profiling of protease cleavage sites by chemoselective labeling of protein N-termini Proc. Natl. Acad. Sci. U. S. A. 106 2009 19310 19315 10.1073/pnas.0908958106
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 19310-19315
-
-
Xu, G.1
Shin, S.B.Y.2
Jaffrey, S.R.3
-
35
-
-
55249096429
-
Tags for labeling protein N-termini with subtiligase for proteomics
-
H.A.I. Yoshihara, S. Mahrus, and J.A. Wells Tags for labeling protein N-termini with subtiligase for proteomics Bioorg. Med. Chem. Lett. 18 2008 6000 6003 10.1016/j.bmcl.2008.08.044
-
(2008)
Bioorg. Med. Chem. Lett.
, vol.18
, pp. 6000-6003
-
-
Yoshihara, H.A.I.1
Mahrus, S.2
Wells, J.A.3
-
36
-
-
84890577781
-
Proteolytic post-translational modification of proteins: proteomic tools and methodology
-
L.D. Rogers, and C.M. Overall Proteolytic post-translational modification of proteins: proteomic tools and methodology Mol. Cell. Proteom. MCP 12 2013 3532 3542 10.1074/mcp.M113.031310
-
(2013)
Mol. Cell. Proteom. MCP
, vol.12
, pp. 3532-3542
-
-
Rogers, L.D.1
Overall, C.M.2
-
38
-
-
84859847988
-
N- and C-terminal degradomics: new approaches to reveal biological roles for plant proteases from substrate identification
-
P.F. Huesgen, and C.M. Overall N- and C-terminal degradomics: new approaches to reveal biological roles for plant proteases from substrate identification Physiol. Plant 145 2012 5 17 10.1111/j.1399-3054.2011.01536.x
-
(2012)
Physiol. Plant
, vol.145
, pp. 5-17
-
-
Huesgen, P.F.1
Overall, C.M.2
-
39
-
-
84875266403
-
Contemporary positional proteomics strategies to study protein processing
-
K. Plasman, P. Van Damme, and K. Gevaert Contemporary positional proteomics strategies to study protein processing Curr. Opin. Chem. Biol. 17 2013 66 72 10.1016/j.cbpa.2012.11.026
-
(2013)
Curr. Opin. Chem. Biol.
, vol.17
, pp. 66-72
-
-
Plasman, K.1
Van Damme, P.2
Gevaert, K.3
-
40
-
-
77954693076
-
Proteome-wide analysis of protein carboxy termini: C terminomics
-
O. Schilling, O. Barré, P.F. Huesgen, and C.M. Overall Proteome-wide analysis of protein carboxy termini: C terminomics Nat. Methods 7 2010 508 511 10.1038/nmeth.1467
-
(2010)
Nat. Methods
, vol.7
, pp. 508-511
-
-
Schilling, O.1
Barré, O.2
Huesgen, P.F.3
Overall, C.M.4
-
41
-
-
77954694885
-
Complementary positional proteomics for screening substrates of endo- and exoproteases
-
P. Van Damme, A. Staes, S. Bronsoms, K. Helsens, N. Colaert, E. Timmerman, and et al. Complementary positional proteomics for screening substrates of endo- and exoproteases Nat. Methods 7 2010 512 515 10.1038/nmeth.1469
-
(2010)
Nat. Methods
, vol.7
, pp. 512-515
-
-
Van Damme, P.1
Staes, A.2
Bronsoms, S.3
Helsens, K.4
Colaert, N.5
Timmerman, E.6
-
42
-
-
84924744021
-
C-terminomics: targeted analysis of natural and posttranslationally modified protein and peptide C-termini
-
S. Tanco, K. Gevaert, and P. Van Damme C-terminomics: targeted analysis of natural and posttranslationally modified protein and peptide C-termini Proteomics 15 2015 903 914 10.1002/pmic.201400301
-
(2015)
Proteomics
, vol.15
, pp. 903-914
-
-
Tanco, S.1
Gevaert, K.2
Van Damme, P.3
-
43
-
-
84925027070
-
LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification
-
P.F. Huesgen, P.F. Lange, L.D. Rogers, N. Solis, U. Eckhard, O. Kleifeld, and et al. LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification Nat. Methods 12 2015 55 58 10.1038/nmeth.3177
-
(2015)
Nat. Methods
, vol.12
, pp. 55-58
-
-
Huesgen, P.F.1
Lange, P.F.2
Rogers, L.D.3
Solis, N.4
Eckhard, U.5
Kleifeld, O.6
-
44
-
-
0036302814
-
Protease degradomics: a new challenge for proteomics
-
C. López-Otín, and C.M. Overall Protease degradomics: a new challenge for proteomics Nat. Rev. Mol. Cell Biol. 3 2002 509 519 10.1038/nrm858
-
(2002)
Nat. Rev. Mol. Cell Biol.
, vol.3
, pp. 509-519
-
-
López-Otín, C.1
Overall, C.M.2
-
45
-
-
84923342100
-
Structure and mechanism of an aspartimide-dependent peptide ligase in human legumain
-
E. Dall, J.C. Fegg, P. Briza, and H. Brandstetter Structure and mechanism of an aspartimide-dependent peptide ligase in human legumain Angew. Chem. Int. Ed. Engl. 54 2015 2917 2921 10.1002/anie.201409135
-
(2015)
Angew. Chem. Int. Ed. Engl.
, vol.54
, pp. 2917-2921
-
-
Dall, E.1
Fegg, J.C.2
Briza, P.3
Brandstetter, H.4
-
46
-
-
31344458952
-
Structure and function of matrix metalloproteinases and TIMPs
-
H. Nagase, R. Visse, and G. Murphy Structure and function of matrix metalloproteinases and TIMPs Cardiovasc. Res. 69 2006 562 573 10.1016/j.cardiores.2005.12.002
-
(2006)
Cardiovasc. Res.
, vol.69
, pp. 562-573
-
-
Nagase, H.1
Visse, R.2
Murphy, G.3
-
47
-
-
52949084668
-
Progress in matrix metalloproteinase research
-
G. Murphy, and H. Nagase Progress in matrix metalloproteinase research Mol. Asp. Med. 29 2008 290 308 10.1016/j.mam.2008.05.002
-
(2008)
Mol. Asp. Med.
, vol.29
, pp. 290-308
-
-
Murphy, G.1
Nagase, H.2
-
48
-
-
37249059121
-
LPS responsiveness and neutrophil chemotaxis in vivo require PMN MMP-8 activity
-
A.M. Tester, J.H. Cox, A.R. Connor, A.E. Starr, R.A. Dean, X.S. Puente, and et al. LPS responsiveness and neutrophil chemotaxis in vivo require PMN MMP-8 activity PLoS One 2 2007 e312 10.1371/journal.pone.0000312
-
(2007)
PLoS One
, vol.2
, pp. e312
-
-
Tester, A.M.1
Cox, J.H.2
Connor, A.R.3
Starr, A.E.4
Dean, R.A.5
Puente, X.S.6
-
49
-
-
0032161747
-
Cell surface activation of progelatinase A (proMMP-2) and cell migration
-
H. Nagase Cell surface activation of progelatinase A (proMMP-2) and cell migration Cell Res. 8 1998 179 186 10.1038/cr.1998.18
-
(1998)
Cell Res.
, vol.8
, pp. 179-186
-
-
Nagase, H.1
-
50
-
-
0032493657
-
The involvement of the fibronectin type II-like modules of human gelatinase A in cell surface localization and activation
-
B. Steffensen, H.F. Bigg, and C.M. Overall The involvement of the fibronectin type II-like modules of human gelatinase A in cell surface localization and activation J. Biol. Chem. 273 1998 20622 20628
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 20622-20628
-
-
Steffensen, B.1
Bigg, H.F.2
Overall, C.M.3
-
51
-
-
84876019734
-
Missing the target: matrix metalloproteinase antitargets in inflammation and cancer
-
A. Dufour, and C.M. Overall Missing the target: matrix metalloproteinase antitargets in inflammation and cancer Trends Pharmacol. Sci. 34 2013 233 242 10.1016/j.tips.2013.02.004
-
(2013)
Trends Pharmacol. Sci.
, vol.34
, pp. 233-242
-
-
Dufour, A.1
Overall, C.M.2
-
52
-
-
84902082685
-
Ensembles of protein termini and specific proteolytic signatures as candidate biomarkers of disease
-
P.F. Huesgen, P.F. Lange, and C.M. Overall Ensembles of protein termini and specific proteolytic signatures as candidate biomarkers of disease Proteom. Clin. Appl. 8 2014 338 350 10.1002/prca.201300104
-
(2014)
Proteom. Clin. Appl.
, vol.8
, pp. 338-350
-
-
Huesgen, P.F.1
Lange, P.F.2
Overall, C.M.3
-
53
-
-
84906716279
-
Mass spectrometry based biomarker discovery, verification, and validation-quality assurance and control of protein biomarker assays
-
C.E. Parker, and C.H. Borchers Mass spectrometry based biomarker discovery, verification, and validation-quality assurance and control of protein biomarker assays Mol. Oncol. 8 2014 840 858 10.1016/j.molonc.2014.03.006
-
(2014)
Mol. Oncol.
, vol.8
, pp. 840-858
-
-
Parker, C.E.1
Borchers, C.H.2
-
54
-
-
55049133250
-
Metadegradomics: toward in vivo quantitative degradomics of proteolytic post-translational modifications of the cancer proteome
-
A. Doucet, G.S. Butler, D. Rodríguez, A. Prudova, and C.M. Overall Metadegradomics: toward in vivo quantitative degradomics of proteolytic post-translational modifications of the cancer proteome Mol. Cell. Proteom. MCP 7 2008 1925 1951 10.1074/mcp.R800012-MCP200
-
(2008)
Mol. Cell. Proteom. MCP
, vol.7
, pp. 1925-1951
-
-
Doucet, A.1
Butler, G.S.2
Rodríguez, D.3
Prudova, A.4
Overall, C.M.5
-
55
-
-
33748308883
-
Targeting proteases: successes, failures and future prospects
-
B. Turk Targeting proteases: successes, failures and future prospects Nat. Rev. Drug Discov. 5 2006 785 799 10.1038/nrd2092
-
(2006)
Nat. Rev. Drug Discov.
, vol.5
, pp. 785-799
-
-
Turk, B.1
-
56
-
-
84901659491
-
Circulating proteolytic signatures of chemotherapy-induced cell death in humans discovered by N-terminal labeling
-
A.P. Wiita, G.W. Hsu, C.M. Lu, J.H. Esensten, and J.A. Wells Circulating proteolytic signatures of chemotherapy-induced cell death in humans discovered by N-terminal labeling Proc. Natl. Acad. Sci. U. S. A. 111 2014 7594 7599 10.1073/pnas.1405987111
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. 7594-7599
-
-
Wiita, A.P.1
Hsu, G.W.2
Lu, C.M.3
Esensten, J.H.4
Wells, J.A.5
-
57
-
-
0034682885
-
Inflammation dampened by gelatinase A cleavage of monocyte chemoattractant protein-3
-
G.A. McQuibban, J.H. Gong, E.M. Tam, C.A. McCulloch, I. Clark-Lewis, and C.M. Overall Inflammation dampened by gelatinase A cleavage of monocyte chemoattractant protein-3 Science 289 2000 1202 1206
-
(2000)
Science
, vol.289
, pp. 1202-1206
-
-
McQuibban, G.A.1
Gong, J.H.2
Tam, E.M.3
McCulloch, C.A.4
Clark-Lewis, I.5
Overall, C.M.6
-
58
-
-
84857287661
-
Biochemical analysis of matrix metalloproteinase activation of chemokines CCL15 and CCL23 and increased glycosaminoglycan binding of CCL16
-
A.E. Starr, A. Dufour, J. Maier, and C.M. Overall Biochemical analysis of matrix metalloproteinase activation of chemokines CCL15 and CCL23 and increased glycosaminoglycan binding of CCL16 J. Biol. Chem. 287 2012 5848 5860 10.1074/jbc.M111.314609
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 5848-5860
-
-
Starr, A.E.1
Dufour, A.2
Maier, J.3
Overall, C.M.4
-
59
-
-
84930644133
-
Cysteine cathepsins activate ELR chemokines and inactivate non-ELR chemokines
-
U. Repnik, A.E. Starr, C.M. Overall, and B. Turk Cysteine cathepsins activate ELR chemokines and inactivate non-ELR chemokines J. Biol. Chem. 290 2015 13800 13811 10.1074/jbc.M115.638395
-
(2015)
J. Biol. Chem.
, vol.290
, pp. 13800-13811
-
-
Repnik, U.1
Starr, A.E.2
Overall, C.M.3
Turk, B.4
-
60
-
-
84870486209
-
Oligomeric structure of 14-3-3 protein: what do we know about monomers?
-
N.N. Sluchanko, and N.B. Gusev Oligomeric structure of 14-3-3 protein: what do we know about monomers? FEBS Lett. 586 2012 4249 4256 10.1016/j.febslet.2012.10.048
-
(2012)
FEBS Lett.
, vol.586
, pp. 4249-4256
-
-
Sluchanko, N.N.1
Gusev, N.B.2
-
61
-
-
0025270792
-
Inactivation of human plasma alpha 1-proteinase inhibitor by human PMN leucocyte collagenase
-
V. Knäuper, H. Reinke, and H. Tschesche Inactivation of human plasma alpha 1-proteinase inhibitor by human PMN leucocyte collagenase FEBS Lett. 263 1990 355 357
-
(1990)
FEBS Lett.
, vol.263
, pp. 355-357
-
-
Knäuper, V.1
Reinke, H.2
Tschesche, H.3
-
62
-
-
84973440877
-
N-terminal modifications of cellular proteins: the enzymes involved, their substrate specificities and biological effects
-
S. Varland, C. Osberg, and T. Arnesen N-terminal modifications of cellular proteins: the enzymes involved, their substrate specificities and biological effects Proteomics 15 2015 2385 2401 10.1002/pmic.201400619
-
(2015)
Proteomics
, vol.15
, pp. 2385-2401
-
-
Varland, S.1
Osberg, C.2
Arnesen, T.3
-
63
-
-
84927655838
-
New roles for old modifications: emerging roles of N-terminal post-translational modifications in development and disease
-
J.G. Tooley, and C.E. Schaner Tooley New roles for old modifications: emerging roles of N-terminal post-translational modifications in development and disease Protein Sci. Publ. Protein Soc. 23 2014 1641 1649 10.1002/pro.2547
-
(2014)
Protein Sci. Publ. Protein Soc.
, vol.23
, pp. 1641-1649
-
-
Tooley, J.G.1
Schaner Tooley, C.E.2
-
64
-
-
84872613178
-
Protein N-terminal acetyltransferases in cancer
-
T.V. Kalvik, and T. Arnesen Protein N-terminal acetyltransferases in cancer Oncogene 32 2013 269 276 10.1038/onc.2012.82
-
(2013)
Oncogene
, vol.32
, pp. 269-276
-
-
Kalvik, T.V.1
Arnesen, T.2
-
65
-
-
79959499115
-
A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas
-
M110.006353
-
T. Farrah, E.W. Deutsch, G.S. Omenn, D.S. Campbell, Z. Sun, J.A. Bletz, and et al. A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas Mol. Cell. Proteom. MCP 10 2011 10.1074/mcp.M110.006353 M110.006353
-
(2011)
Mol. Cell. Proteom. MCP
, vol.10
-
-
Farrah, T.1
Deutsch, E.W.2
Omenn, G.S.3
Campbell, D.S.4
Sun, Z.5
Bletz, J.A.6
-
66
-
-
33845572150
-
Human body fluid proteome analysis
-
S. Hu, J.A. Loo, and D.T. Wong Human body fluid proteome analysis Proteomics 6 2006 6326 6353 10.1002/pmic.200600284
-
(2006)
Proteomics
, vol.6
, pp. 6326-6353
-
-
Hu, S.1
Loo, J.A.2
Wong, D.T.3
-
67
-
-
84897097267
-
Absolute proteomic quantification of the activity state of proteases and proteolytic cleavages using proteolytic signature peptides and isobaric tags
-
R.P. Fahlman, W. Chen, and C.M. Overall Absolute proteomic quantification of the activity state of proteases and proteolytic cleavages using proteolytic signature peptides and isobaric tags J. Proteom. 100 2014 79 91 10.1016/j.jprot.2013.09.006
-
(2014)
J. Proteom.
, vol.100
, pp. 79-91
-
-
Fahlman, R.P.1
Chen, W.2
Overall, C.M.3
-
68
-
-
74049131716
-
High-throughput generation of selected reaction-monitoring assays for proteins and proteomes
-
P. Picotti, O. Rinner, R. Stallmach, F. Dautel, T. Farrah, B. Domon, and et al. High-throughput generation of selected reaction-monitoring assays for proteins and proteomes Nat. Methods 7 2010 43 46 10.1038/nmeth.1408
-
(2010)
Nat. Methods
, vol.7
, pp. 43-46
-
-
Picotti, P.1
Rinner, O.2
Stallmach, R.3
Dautel, F.4
Farrah, T.5
Domon, B.6
-
69
-
-
84923773050
-
Building high-quality assay libraries for targeted analysis of SWATH MS data
-
O.T. Schubert, L.C. Gillet, B.C. Collins, P. Navarro, G. Rosenberger, W.E. Wolski, and et al. Building high-quality assay libraries for targeted analysis of SWATH MS data Nat. Protoc. 10 2015 426 441 10.1038/nprot.2015.015
-
(2015)
Nat. Protoc.
, vol.10
, pp. 426-441
-
-
Schubert, O.T.1
Gillet, L.C.2
Collins, B.C.3
Navarro, P.4
Rosenberger, G.5
Wolski, W.E.6
-
70
-
-
84945440951
-
Minimal sample requirement for highly multiplexed protein quantification in cell lines and tissues by PCT-SWATH mass spectrometry
-
S. Shao, T. Guo, C.C. Koh, S. Gillessen, M. Joerger, W. Jochum, and et al. Minimal sample requirement for highly multiplexed protein quantification in cell lines and tissues by PCT-SWATH mass spectrometry Proteomics 2015 10.1002/pmic.201500161
-
(2015)
Proteomics
-
-
Shao, S.1
Guo, T.2
Koh, C.C.3
Gillessen, S.4
Joerger, M.5
Jochum, W.6
-
71
-
-
84897908258
-
Technology: the $1,000 genome
-
E.C. Hayden Technology: The $1,000 genome Nature 507 2014 294 295 10.1038/507294a
-
(2014)
Nature
, vol.507
, pp. 294-295
-
-
Hayden, E.C.1
-
72
-
-
78650775954
-
The $1,000 genome, the $100,000 analysis?
-
E.R. Mardis The $1,000 genome, the $100,000 analysis? Genome Med. 2 2010 84 10.1186/gm205
-
(2010)
Genome Med.
, vol.2
, pp. 84
-
-
Mardis, E.R.1
-
73
-
-
78649842241
-
Genomics, type 2 diabetes, and obesity
-
M.I. McCarthy Genomics, type 2 diabetes, and obesity N. Engl. J. Med. 363 2010 2339 2350 10.1056/NEJMra0906948
-
(2010)
N. Engl. J. Med.
, vol.363
, pp. 2339-2350
-
-
McCarthy, M.I.1
-
74
-
-
84908068309
-
A proteomic glimpse into the initial global epigenetic changes during HIV infection
-
L.-M.P. Britton, P. Sova, S. Belisle, S. Liu, E.Y. Chan, M.G. Katze, and et al. A proteomic glimpse into the initial global epigenetic changes during HIV infection Proteomics 14 2014 2226 2230 10.1002/pmic.201400116
-
(2014)
Proteomics
, vol.14
, pp. 2226-2230
-
-
Britton, L.-M.P.1
Sova, P.2
Belisle, S.3
Liu, S.4
Chan, E.Y.5
Katze, M.G.6
-
75
-
-
84928789447
-
Personalized medicine: time for one-person trials
-
N.J. Schork Personalized medicine: time for one-person trials Nature 520 2015 609 611 10.1038/520609a
-
(2015)
Nature
, vol.520
, pp. 609-611
-
-
Schork, N.J.1
-
76
-
-
34247604930
-
When good drugs go bad
-
K.M. Giacomini, R.M. Krauss, D.M. Roden, M. Eichelbaum, M.R. Hayden, and Y. Nakamura When good drugs go bad Nature 446 2007 975 977 10.1038/446975a
-
(2007)
Nature
, vol.446
, pp. 975-977
-
-
Giacomini, K.M.1
Krauss, R.M.2
Roden, D.M.3
Eichelbaum, M.4
Hayden, M.R.5
Nakamura, Y.6
-
77
-
-
26844503270
-
Trastuzumab after adjuvant chemotherapy in HER2-positive breast cancer
-
M.J. Piccart-Gebhart, M. Procter, B. Leyland-Jones, A. Goldhirsch, M. Untch, I. Smith, and et al. Trastuzumab after adjuvant chemotherapy in HER2-positive breast cancer N. Engl. J. Med. 353 2005 1659 1672 10.1056/NEJMoa052306
-
(2005)
N. Engl. J. Med.
, vol.353
, pp. 1659-1672
-
-
Piccart-Gebhart, M.J.1
Procter, M.2
Leyland-Jones, B.3
Goldhirsch, A.4
Untch, M.5
Smith, I.6
-
78
-
-
26844536978
-
Trastuzumab plus adjuvant chemotherapy for operable HER2-positive breast cancer
-
E.H. Romond, E.A. Perez, J. Bryant, V.J. Suman, C.E. Geyer, N.E. Davidson, and et al. Trastuzumab plus adjuvant chemotherapy for operable HER2-positive breast cancer N. Engl. J. Med. 353 2005 1673 1684 10.1056/NEJMoa052122
-
(2005)
N. Engl. J. Med.
, vol.353
, pp. 1673-1684
-
-
Romond, E.H.1
Perez, E.A.2
Bryant, J.3
Suman, V.J.4
Geyer, C.E.5
Davidson, N.E.6
-
79
-
-
79959795786
-
Improved survival with vemurafenib in melanoma with BRAF V600E mutation
-
P.B. Chapman, A. Hauschild, C. Robert, J.B. Haanen, P. Ascierto, J. Larkin, and et al. Improved survival with vemurafenib in melanoma with BRAF V600E mutation N. Engl. J. Med. 364 2011 2507 2516 10.1056/NEJMoa1103782
-
(2011)
N. Engl. J. Med.
, vol.364
, pp. 2507-2516
-
-
Chapman, P.B.1
Hauschild, A.2
Robert, C.3
Haanen, J.B.4
Ascierto, P.5
Larkin, J.6
-
80
-
-
2342471392
-
Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib
-
T.J. Lynch, D.W. Bell, R. Sordella, S. Gurubhagavatula, R.A. Okimoto, B.W. Brannigan, and et al. Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib N. Engl. J. Med. 350 2004 2129 2139 10.1056/NEJMoa040938
-
(2004)
N. Engl. J. Med.
, vol.350
, pp. 2129-2139
-
-
Lynch, T.J.1
Bell, D.W.2
Sordella, R.3
Gurubhagavatula, S.4
Okimoto, R.A.5
Brannigan, B.W.6
-
81
-
-
84937958341
-
Smartphone applications for patients' health & fitness
-
J.P. Higgins Smartphone applications for patients' health & fitness Am. J. Med. 2015 10.1016/j.amjmed.2015.05.038
-
(2015)
Am. J. Med.
-
-
Higgins, J.P.1
|