-
1
-
-
10944243117
-
Proteolysis as a regulatory mechanism
-
Ehrmann M, Clausen T (2004) Proteolysis as a regulatory mechanism. Annu Rev Genet 38:709-724.
-
(2004)
Annu Rev Genet
, vol.38
, pp. 709-724
-
-
Ehrmann, M.1
Clausen, T.2
-
2
-
-
0347445722
-
A genomic analysis of rat proteases and protease inhibitors
-
Puente XS, Lopez-Otin C (2004) A genomic analysis of rat proteases and protease inhibitors. Genome Res 14:609-622.
-
(2004)
Genome Res
, vol.14
, pp. 609-622
-
-
Puente, X.S.1
Lopez-Otin, C.2
-
3
-
-
0038333588
-
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
-
Gevaert K, et al. (2003) Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. Nat Biotechnol 21:566-569.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 566-569
-
-
Gevaert, K.1
-
4
-
-
42049084149
-
Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC)
-
Staes A, et al. (2008) Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC). Proteomics 8:1362-1370.
-
(2008)
Proteomics
, vol.8
, pp. 1362-1370
-
-
Staes, A.1
-
5
-
-
30944438540
-
Positional proteomics: Selective recovery and analysis of N-terminal proteolytic peptides
-
McDonald L, Robertson DH, Hurst JL, Beynon RJ (2005) Positional proteomics: Selective recovery and analysis of N-terminal proteolytic peptides. Nat Methods 2:955-957.
-
(2005)
Nat Methods
, vol.2
, pp. 955-957
-
-
McDonald, L.1
Robertson, D.H.2
Hurst, J.L.3
Beynon, R.J.4
-
6
-
-
34248637584
-
Positional proteomics: Preparation of amino-terminal peptides as a strategy for proteome simplification and characterization
-
McDonald L, Beynon RJ (2006) Positional proteomics: Preparation of amino-terminal peptides as a strategy for proteome simplification and characterization. Nat Protoc 1:1790-1798.
-
(2006)
Nat Protoc
, vol.1
, pp. 1790-1798
-
-
McDonald, L.1
Beynon, R.J.2
-
7
-
-
52649141086
-
Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini
-
Mahrus S, et al. (2008) Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini. Cell 134:866-876.
-
(2008)
Cell
, vol.134
, pp. 866-876
-
-
Mahrus, S.1
-
8
-
-
35148891761
-
Profiling constitutive proteolytic events in vivo
-
Timmer JC, et al. (2007) Profiling constitutive proteolytic events in vivo. Biochem J 407:41-48.
-
(2007)
Biochem J
, vol.407
, pp. 41-48
-
-
Timmer, J.C.1
-
9
-
-
77956847890
-
Quantitation of amino acids as 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate derivatives
-
ed Molnár-Perl I Elsevier, Amsterdam
-
Cohen SA (2005) Quantitation of amino acids as 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate derivatives. Quantitation of Amino Acids and Amines by Chromatography: Methods and Protocols, ed Molnár-Perl I (Elsevier, Amsterdam), Vol 70, p 246.
-
(2005)
Quantitation of Amino Acids and Amines by Chromatography: Methods and Protocols
, vol.70
, pp. 246
-
-
Cohen, S.A.1
-
10
-
-
0004161250
-
-
Jones and Bartlett, Sudbury, MA, 3rd Ed
-
Strickberger MW (2000) Evolution (Jones and Bartlett, Sudbury, MA), 3rd Ed.
-
(2000)
Evolution
-
-
Strickberger, M.W.1
-
11
-
-
0025879501
-
In a staphylococcal nuclease mutant the side-chain of a lysine replacing valine 66 is fully buried in the hydrophobic core
-
Stites WE, Gittis AG, Lattman EE, Shortle D (1991) In a staphylococcal nuclease mutant the side-chain of a lysine replacing valine 66 is fully buried in the hydrophobic core. J Mol Biol 221:7-14.
-
(1991)
J Mol Biol
, vol.221
, pp. 7-14
-
-
Stites, W.E.1
Gittis, A.G.2
Lattman, E.E.3
Shortle, D.4
-
13
-
-
0001576237
-
Mechanism of the phenyl isothiocyanate degradation of peptides
-
Edman P (1956) Mechanism of the phenyl isothiocyanate degradation of peptides. Nature 177:667-668.
-
(1956)
Nature
, vol.177
, pp. 667-668
-
-
Edman, P.1
-
14
-
-
0029013999
-
Chemical methods of protein sequence analysis
-
Bailey JM (1995) Chemical methods of protein sequence analysis. J Chromatogr A 705:47-65.
-
(1995)
J Chromatogr A
, vol.705
, pp. 47-65
-
-
Bailey, J.M.1
-
15
-
-
0021702293
-
A general procedure for the end labeling of proteins and positioning of amino acids in the sequence
-
Jay DG (1984) A general procedure for the end labeling of proteins and positioning of amino acids in the sequence. J Biol Chem 259:15572-15578.
-
(1984)
J Biol Chem
, vol.259
, pp. 15572-15578
-
-
Jay, D.G.1
-
16
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
Boeckmann B, et al. (2003) The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res 31:365-370.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
-
17
-
-
2442686862
-
Mutations at the S1 sites of methionine aminopeptidases from Escherichia coli and Homo sapiens reveal the residues critical for substrate specificity
-
Li JY, et al. (2004) Mutations at the S1 sites of methionine aminopeptidases from Escherichia coli and Homo sapiens reveal the residues critical for substrate specificity. J Biol Chem 279:21128-21134.
-
(2004)
J Biol Chem
, vol.279
, pp. 21128-21134
-
-
Li, J.Y.1
-
18
-
-
0037150672
-
Identification of signal peptide peptidase, a presenilin-type aspartic protease
-
Weihofen A, Binns K, Lemberg MK, Ashman K, Martoglio B (2002) Identification of signal peptide peptidase, a presenilin-type aspartic protease. Science 296:2215-2218.
-
(2002)
Science
, vol.296
, pp. 2215-2218
-
-
Weihofen, A.1
Binns, K.2
Lemberg, M.K.3
Ashman, K.4
Martoglio, B.5
-
19
-
-
0025312373
-
Matrix processing peptidase of mitochondria. Structure-function relationships
-
Schneider H, Arretz M, Wachter E, Neupert W (1990) Matrix processing peptidase of mitochondria. Structure-function relationships. J Biol Chem 265:9881-9887.
-
(1990)
J Biol Chem
, vol.265
, pp. 9881-9887
-
-
Schneider, H.1
Arretz, M.2
Wachter, E.3
Neupert, W.4
-
20
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
Emanuelsson O, Brunak S, von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2:953-971.
-
(2007)
Nat Protoc
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
21
-
-
0025297583
-
The signal peptide
-
von Heijne G (1990) The signal peptide. J Membr Biol 115:195-201.
-
(1990)
J Membr Biol
, vol.115
, pp. 195-201
-
-
von Heijne, G.1
-
22
-
-
0031964126
-
Feature-extraction from endopeptidase cleavage sites in mitochondrial targeting peptides
-
Schneider G, et al. (1998) Feature-extraction from endopeptidase cleavage sites in mitochondrial targeting peptides. Proteins 30:49-60.
-
(1998)
Proteins
, vol.30
, pp. 49-60
-
-
Schneider, G.1
-
24
-
-
0030849093
-
A combinatorial approach defines specificities of members of the caspase family and granzyme B. Functional relationships established for key mediators of apoptosis
-
Thornberry NA, et al. (1997) A combinatorial approach defines specificities of members of the caspase family and granzyme B. Functional relationships established for key mediators of apoptosis. J Biol Chem 272:17907-17911.
-
(1997)
J Biol Chem
, vol.272
, pp. 17907-17911
-
-
Thornberry, N.A.1
-
25
-
-
27144473929
-
Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis
-
Van Damme P, et al. (2005) Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis. Nat Methods 2:771-777.
-
(2005)
Nat Methods
, vol.2
, pp. 771-777
-
-
Van Damme, P.1
-
26
-
-
2442418980
-
Ricin triggers apoptotic morphological changes through caspase-3 cleavage of BAT3
-
Wu YH, Shih SF, Lin JY (2004) Ricin triggers apoptotic morphological changes through caspase-3 cleavage of BAT3. J Biol Chem 279:19264-19275.
-
(2004)
J Biol Chem
, vol.279
, pp. 19264-19275
-
-
Wu, Y.H.1
Shih, S.F.2
Lin, J.Y.3
-
27
-
-
42149187768
-
Cisplatin nephrotoxicity: Mechanisms and renoprotective strategies
-
Pabla N, Dong Z (2008) Cisplatin nephrotoxicity: Mechanisms and renoprotective strategies. Kidney Int 73:994-1007.
-
(2008)
Kidney Int
, vol.73
, pp. 994-1007
-
-
Pabla, N.1
Dong, Z.2
-
28
-
-
34447260051
-
Nuclear protein profiling of Jurkat cells during heat stress-induced apoptosis by 2-DE and MS/MS
-
Yuan X, et al. (2007) Nuclear protein profiling of Jurkat cells during heat stress-induced apoptosis by 2-DE and MS/MS. Electrophoresis 28:2018-2026.
-
(2007)
Electrophoresis
, vol.28
, pp. 2018-2026
-
-
Yuan, X.1
-
29
-
-
37149027185
-
Quantitative proteome analysis of cisplatin-induced apoptotic Jurkat T cells by stable isotope labeling with amino acids in cell culture, SDS-PAGE, and LC-MALDI-TOF/TOF MS
-
Schmidt F, et al. (2007) Quantitative proteome analysis of cisplatin-induced apoptotic Jurkat T cells by stable isotope labeling with amino acids in cell culture, SDS-PAGE, and LC-MALDI-TOF/TOF MS. Electrophoresis 28:4359-4368.
-
(2007)
Electrophoresis
, vol.28
, pp. 4359-4368
-
-
Schmidt, F.1
-
30
-
-
0026766091
-
The N-end rule
-
Varshavsky A (1992) The N-end rule. Cell 69:725-735.
-
(1992)
Cell
, vol.69
, pp. 725-735
-
-
Varshavsky, A.1
-
31
-
-
0037326081
-
Mass spectrometric-based approaches in quantitative proteomics
-
Ong SE, Foster LJ, Mann M (2003) Mass spectrometric-based approaches in quantitative proteomics. Methods 29:124-130.
-
(2003)
Methods
, vol.29
, pp. 124-130
-
-
Ong, S.E.1
Foster, L.J.2
Mann, M.3
-
32
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi SP, et al. (1999) Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol 17:994-999.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
-
33
-
-
23044479363
-
Processed N-termini of mature proteins in higher eukaryotes and their major contribution to dynamic proteomics
-
Meinnel T, Peynot P, Giglione C (2005) Processed N-termini of mature proteins in higher eukaryotes and their major contribution to dynamic proteomics. Biochimie 87:701-712.
-
(2005)
Biochimie
, vol.87
, pp. 701-712
-
-
Meinnel, T.1
Peynot, P.2
Giglione, C.3
-
34
-
-
1842831873
-
Deblocking of N-terminally modified proteins
-
Hirano H, Kamp RM (2003) Deblocking of N-terminally modified proteins. Methods Mol Biol 211:355-363.
-
(2003)
Methods Mol Biol
, vol.211
, pp. 355-363
-
-
Hirano, H.1
Kamp, R.M.2
-
35
-
-
0034711184
-
α-terminal acetylation of eukaryotic proteins
-
α-terminal acetylation of eukaryotic proteins. J Biol Chem 275:36479-36482.
-
(2000)
J Biol Chem
, vol.275
, pp. 36479-36482
-
-
Polevoda, B.1
Sherman, F.2
-
36
-
-
0017598292
-
Occurrence of methylated amino acids as N-termini of proteins from Escherichia coli ribosomes
-
Chen R, Brosius J, Wittmann-Liebold B (1977) Occurrence of methylated amino acids as N-termini of proteins from Escherichia coli ribosomes. J Mol Biol 111:173-181.
-
(1977)
J Mol Biol
, vol.111
, pp. 173-181
-
-
Chen, R.1
Brosius, J.2
Wittmann-Liebold, B.3
-
37
-
-
49549113643
-
Global mapping of the topography and magnitude of proteolytic events in apoptosis
-
Dix MM, Simon GM, Cravatt BF (2008) Global mapping of the topography and magnitude of proteolytic events in apoptosis. Cell 134:679-691.
-
(2008)
Cell
, vol.134
, pp. 679-691
-
-
Dix, M.M.1
Simon, G.M.2
Cravatt, B.F.3
-
38
-
-
0014224234
-
Group-specific reagents in protein chemistry
-
Cohen LA (1968) Group-specific reagents in protein chemistry. Annu Rev Biochem 37:695-726.
-
(1968)
Annu Rev Biochem
, vol.37
, pp. 695-726
-
-
Cohen, L.A.1
|