-
1
-
-
0032490917
-
Perinuclear localization of chromatin facilitates transcriptional silencing
-
Andrulis E.D., Neiman A.M., Zappulla D.C., Sternglanz R. Perinuclear localization of chromatin facilitates transcriptional silencing. Nature 1998, 394:592-595.
-
(1998)
Nature
, vol.394
, pp. 592-595
-
-
Andrulis, E.D.1
Neiman, A.M.2
Zappulla, D.C.3
Sternglanz, R.4
-
2
-
-
84870529834
-
The role of PR-Set7 in replication licensing depends on Suv4-20h
-
Beck D.B., Burton A., Oda H., Ziegler-Birling C., Torres-Padilla M.E., Reinberg D. The role of PR-Set7 in replication licensing depends on Suv4-20h. Genes Dev. 2012, 26:2580-2589.
-
(2012)
Genes Dev.
, vol.26
, pp. 2580-2589
-
-
Beck, D.B.1
Burton, A.2
Oda, H.3
Ziegler-Birling, C.4
Torres-Padilla, M.E.5
Reinberg, D.6
-
3
-
-
84864690009
-
Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs
-
Besnard E., Babled A., Lapasset L., Milhavet O., Parrinello H., Dantec C., Marin J.M., Lemaitre J.M. Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs. Nat. Struct. Mol. Biol. 2012, 19:837-844.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 837-844
-
-
Besnard, E.1
Babled, A.2
Lapasset, L.3
Milhavet, O.4
Parrinello, H.5
Dantec, C.6
Marin, J.M.7
Lemaitre, J.M.8
-
4
-
-
33947308706
-
Early replication of short telomeres in budding yeast
-
Bianchi A., Shore D. Early replication of short telomeres in budding yeast. Cell 2007, 128:1051-1062.
-
(2007)
Cell
, vol.128
, pp. 1051-1062
-
-
Bianchi, A.1
Shore, D.2
-
5
-
-
75549090255
-
Mammalian Rif1 contributes to replication stress survival and homology-directed repair
-
Buonomo S.B., Wu Y., Ferguson D., de Lange T. Mammalian Rif1 contributes to replication stress survival and homology-directed repair. J. Cell Biol. 2009, 187:385-398.
-
(2009)
J. Cell Biol.
, vol.187
, pp. 385-398
-
-
Buonomo, S.B.1
Wu, Y.2
Ferguson, D.3
de Lange, T.4
-
6
-
-
57349149434
-
Genome-wide studies highlight indirect links between human replication origins and gene regulation
-
Cadoret J.C., Meisch F., Hassan-Zadeh V., Luyten I., Guillet C., Duret L., Quesneville H., Prioleau M.N. Genome-wide studies highlight indirect links between human replication origins and gene regulation. Proc. Natl. Acad. Sci. USA 2008, 105:15837-15842.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 15837-15842
-
-
Cadoret, J.C.1
Meisch, F.2
Hassan-Zadeh, V.3
Luyten, I.4
Guillet, C.5
Duret, L.6
Quesneville, H.7
Prioleau, M.N.8
-
7
-
-
80052523848
-
Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features
-
Cayrou C., Coulombe P., Vigneron A., Stanojcic S., Ganier O., Peiffer I., Rivals E., Puy A., Laurent-Chabalier S., Desprat R., Méchali M. Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features. Genome Res. 2011, 21:1438-1449.
-
(2011)
Genome Res.
, vol.21
, pp. 1438-1449
-
-
Cayrou, C.1
Coulombe, P.2
Vigneron, A.3
Stanojcic, S.4
Ganier, O.5
Peiffer, I.6
Rivals, E.7
Puy, A.8
Laurent-Chabalier, S.9
Desprat, R.10
Méchali, M.11
-
8
-
-
84857472898
-
New insights into replication origin characteristics in metazoans
-
Cayrou C., Coulombe P., Puy A., Rialle S., Kaplan N., Segal E., Méchali M. New insights into replication origin characteristics in metazoans. Cell Cycle 2012, 11:658-667.
-
(2012)
Cell Cycle
, vol.11
, pp. 658-667
-
-
Cayrou, C.1
Coulombe, P.2
Puy, A.3
Rialle, S.4
Kaplan, N.5
Segal, E.6
Méchali, M.7
-
9
-
-
84876855215
-
RIF1 is essential for 53BP1-dependent nonhomologous end joining and suppression of DNA double-strand break resection
-
Chapman J.R., Barral P., Vannier J.B., Borel V., Steger M., Tomas-Loba A., Sartori A.A., Adams I.R., Batista F.D., Boulton S.J. RIF1 is essential for 53BP1-dependent nonhomologous end joining and suppression of DNA double-strand break resection. Mol. Cell 2013, 49:858-871.
-
(2013)
Mol. Cell
, vol.49
, pp. 858-871
-
-
Chapman, J.R.1
Barral, P.2
Vannier, J.B.3
Borel, V.4
Steger, M.5
Tomas-Loba, A.6
Sartori, A.A.7
Adams, I.R.8
Batista, F.D.9
Boulton, S.J.10
-
10
-
-
84866412836
-
Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells
-
Cornacchia D., Dileep V., Quivy J.P., Foti R., Tili F., Santarella-Mellwig R., Antony C., Almouzni G., Gilbert D.M., Buonomo S.B. Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells. EMBO J. 2012, 31:3678-3690.
-
(2012)
EMBO J.
, vol.31
, pp. 3678-3690
-
-
Cornacchia, D.1
Dileep, V.2
Quivy, J.P.3
Foti, R.4
Tili, F.5
Santarella-Mellwig, R.6
Antony, C.7
Almouzni, G.8
Gilbert, D.M.9
Buonomo, S.B.10
-
11
-
-
84898051697
-
Protein phosphatase 1 recruitment by Rif1 regulates DNA replication origin firing by counteracting DDK activity
-
Davé A., Cooley C., Garg M., Bianchi A. Protein phosphatase 1 recruitment by Rif1 regulates DNA replication origin firing by counteracting DDK activity. Cell Rep. 2014, 7:53-61.
-
(2014)
Cell Rep.
, vol.7
, pp. 53-61
-
-
Davé, A.1
Cooley, C.2
Garg, M.3
Bianchi, A.4
-
12
-
-
84873526612
-
Rif1 prevents resection of DNA breaks and promotes immunoglobulin class switching
-
Di Virgilio M., Callen E., Yamane A., Zhang W., Jankovic M., Gitlin A.D., Feldhahn N., Resch W., Oliveira T.Y., Chait B.T., et al. Rif1 prevents resection of DNA breaks and promotes immunoglobulin class switching. Science 2013, 339:711-715.
-
(2013)
Science
, vol.339
, pp. 711-715
-
-
Di Virgilio, M.1
Callen, E.2
Yamane, A.3
Zhang, W.4
Jankovic, M.5
Gitlin, A.D.6
Feldhahn, N.7
Resch, W.8
Oliveira, T.Y.9
Chait, B.T.10
-
13
-
-
84938893979
-
Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program
-
Dileep V., Ay F., Sima J., Vera D.L., Noble W.S., Gilbert D.M. Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program. Genome Res. 2015, 25:1104-1113.
-
(2015)
Genome Res.
, vol.25
, pp. 1104-1113
-
-
Dileep, V.1
Ay, F.2
Sima, J.3
Vera, D.L.4
Noble, W.S.5
Gilbert, D.M.6
-
14
-
-
0033369515
-
The spatial position and replication timing of chromosomal domains are both established in early G1 phase
-
Dimitrova D.S., Gilbert D.M. The spatial position and replication timing of chromosomal domains are both established in early G1 phase. Mol. Cell 1999, 4:983-993.
-
(1999)
Mol. Cell
, vol.4
, pp. 983-993
-
-
Dimitrova, D.S.1
Gilbert, D.M.2
-
15
-
-
84876527317
-
RIF1 counteracts BRCA1-mediated end resection during DNA repair
-
Feng L., Fong K.W., Wang J., Wang W., Chen J. RIF1 counteracts BRCA1-mediated end resection during DNA repair. J. Biol. Chem. 2013, 288:11135-11143.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 11135-11143
-
-
Feng, L.1
Fong, K.W.2
Wang, J.3
Wang, W.4
Chen, J.5
-
16
-
-
84904001305
-
A role for DNA polymerase θ in the timing of DNA replication
-
Fernandez-Vidal A., Guitton-Sert L., Cadoret J.C., Drac M., Schwob E., Baldacci G., Cazaux C., Hoffmann J.S. A role for DNA polymerase θ in the timing of DNA replication. Nat. Commun. 2014, 5:4285.
-
(2014)
Nat. Commun.
, vol.5
, pp. 4285
-
-
Fernandez-Vidal, A.1
Guitton-Sert, L.2
Cadoret, J.C.3
Drac, M.4
Schwob, E.5
Baldacci, G.6
Cazaux, C.7
Hoffmann, J.S.8
-
17
-
-
41949121084
-
Recruitment to the nuclear periphery can alter expression of genes in human cells
-
Finlan L.E., Sproul D., Thomson I., Boyle S., Kerr E., Perry P., Ylstra B., Chubb J.R., Bickmore W.A. Recruitment to the nuclear periphery can alter expression of genes in human cells. PLoS Genet. 2008, 4:e1000039.
-
(2008)
PLoS Genet.
, vol.4
, pp. e1000039
-
-
Finlan, L.E.1
Sproul, D.2
Thomson, I.3
Boyle, S.4
Kerr, E.5
Perry, P.6
Ylstra, B.7
Chubb, J.R.8
Bickmore, W.A.9
-
18
-
-
76349123622
-
Sequencing newly replicated DNA reveals widespread plasticity in human replication timing
-
Hansen R.S., Thomas S., Sandstrom R., Canfield T.K., Thurman R.E., Weaver M., Dorschner M.O., Gartler S.M., Stamatoyannopoulos J.A. Sequencing newly replicated DNA reveals widespread plasticity in human replication timing. Proc. Natl. Acad. Sci. USA 2010, 107:139-144.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 139-144
-
-
Hansen, R.S.1
Thomas, S.2
Sandstrom, R.3
Canfield, T.K.4
Thurman, R.E.5
Weaver, M.6
Dorschner, M.O.7
Gartler, S.M.8
Stamatoyannopoulos, J.A.9
-
19
-
-
0026623241
-
A RAP1-interacting protein involved in transcriptional silencing and telomere length regulation
-
Hardy C.F., Sussel L., Shore D. A RAP1-interacting protein involved in transcriptional silencing and telomere length regulation. Genes Dev. 1992, 6:801-814.
-
(1992)
Genes Dev.
, vol.6
, pp. 801-814
-
-
Hardy, C.F.1
Sussel, L.2
Shore, D.3
-
20
-
-
84856281556
-
Rif1 is a global regulator of timing of replication origin firing in fission yeast
-
Hayano M., Kanoh Y., Matsumoto S., Renard-Guillet C., Shirahige K., Masai H. Rif1 is a global regulator of timing of replication origin firing in fission yeast. Genes Dev. 2012, 26:137-150.
-
(2012)
Genes Dev.
, vol.26
, pp. 137-150
-
-
Hayano, M.1
Kanoh, Y.2
Matsumoto, S.3
Renard-Guillet, C.4
Shirahige, K.5
Masai, H.6
-
21
-
-
84893920696
-
Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex
-
Hiraga S., Alvino G.M., Chang F., Lian H.Y., Sridhar A., Kubota T., Brewer B.J., Weinreich M., Raghuraman M.K., Donaldson A.D. Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex. Genes Dev. 2014, 28:372-383.
-
(2014)
Genes Dev.
, vol.28
, pp. 372-383
-
-
Hiraga, S.1
Alvino, G.M.2
Chang, F.3
Lian, H.Y.4
Sridhar, A.5
Kubota, T.6
Brewer, B.J.7
Weinreich, M.8
Raghuraman, M.K.9
Donaldson, A.D.10
-
22
-
-
54949085778
-
Global reorganization of replication domains during embryonic stem cell differentiation
-
Hiratani I., Ryba T., Itoh M., Yokochi T., Schwaiger M., Chang C.W., Lyou Y., Townes T.M., Schübeler D., Gilbert D.M. Global reorganization of replication domains during embryonic stem cell differentiation. PLoS Biol. 2008, 6:e245.
-
(2008)
PLoS Biol.
, vol.6
, pp. e245
-
-
Hiratani, I.1
Ryba, T.2
Itoh, M.3
Yokochi, T.4
Schwaiger, M.5
Chang, C.W.6
Lyou, Y.7
Townes, T.M.8
Schübeler, D.9
Gilbert, D.M.10
-
23
-
-
75649092667
-
Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis
-
Hiratani I., Ryba T., Itoh M., Rathjen J., Kulik M., Papp B., Fussner E., Bazett-Jones D.P., Plath K., Dalton S., et al. Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis. Genome Res. 2010, 20:155-169.
-
(2010)
Genome Res.
, vol.20
, pp. 155-169
-
-
Hiratani, I.1
Ryba, T.2
Itoh, M.3
Rathjen, J.4
Kulik, M.5
Papp, B.6
Fussner, E.7
Bazett-Jones, D.P.8
Plath, K.9
Dalton, S.10
-
24
-
-
84943388333
-
FourCSeq: analysis of 4C sequencing data
-
Klein F.A., Pakozdi T., Anders S., Ghavi-Helm Y., Furlong E.E., Huber W. FourCSeq: analysis of 4C sequencing data. Bioinformatics 2015, 31:3085-3091.
-
(2015)
Bioinformatics
, vol.31
, pp. 3085-3091
-
-
Klein, F.A.1
Pakozdi, T.2
Anders, S.3
Ghavi-Helm, Y.4
Furlong, E.E.5
Huber, W.6
-
25
-
-
84856103786
-
Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae
-
Knott S.R., Peace J.M., Ostrow A.Z., Gan Y., Rex A.E., Viggiani C.J., Tavaré S., Aparicio O.M. Forkhead transcription factors establish origin timing and long-range clustering in S. cerevisiae. Cell 2012, 148:99-111.
-
(2012)
Cell
, vol.148
, pp. 99-111
-
-
Knott, S.R.1
Peace, J.M.2
Ostrow, A.Z.3
Gan, Y.4
Rex, A.E.5
Viggiani, C.J.6
Tavaré, S.7
Aparicio, O.M.8
-
26
-
-
79955957615
-
The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation
-
Lian H.Y., Robertson E.D., Hiraga S., Alvino G.M., Collingwood D., McCune H.J., Sridhar A., Brewer B.J., Raghuraman M.K., Donaldson A.D. The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation. Mol. Biol. Cell 2011, 22:1753-1765.
-
(2011)
Mol. Biol. Cell
, vol.22
, pp. 1753-1765
-
-
Lian, H.Y.1
Robertson, E.D.2
Hiraga, S.3
Alvino, G.M.4
Collingwood, D.5
McCune, H.J.6
Sridhar, A.7
Brewer, B.J.8
Raghuraman, M.K.9
Donaldson, A.D.10
-
27
-
-
13944273471
-
P53 induces differentiation of mouse embryonic stem cells by suppressing Nanog expression
-
Lin T., Chao C., Saito S., Mazur S.J., Murphy M.E., Appella E., Xu Y. p53 induces differentiation of mouse embryonic stem cells by suppressing Nanog expression. Nat. Cell Biol. 2005, 7:165-171.
-
(2005)
Nat. Cell Biol.
, vol.7
, pp. 165-171
-
-
Lin, T.1
Chao, C.2
Saito, S.3
Mazur, S.J.4
Murphy, M.E.5
Appella, E.6
Xu, Y.7
-
28
-
-
82455164158
-
Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast
-
Mantiero D., Mackenzie A., Donaldson A., Zegerman P. Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast. EMBO J. 2011, 30:4805-4814.
-
(2011)
EMBO J.
, vol.30
, pp. 4805-4814
-
-
Mantiero, D.1
Mackenzie, A.2
Donaldson, A.3
Zegerman, P.4
-
29
-
-
84898041281
-
Rif1 controls DNA replication timing in yeast through the PP1 phosphatase Glc7
-
Mattarocci S., Shyian M., Lemmens L., Damay P., Altintas D.M., Shi T., Bartholomew C.R., Thomä N.H., Hardy C.F., Shore D. Rif1 controls DNA replication timing in yeast through the PP1 phosphatase Glc7. Cell Rep. 2014, 7:62-69.
-
(2014)
Cell Rep.
, vol.7
, pp. 62-69
-
-
Mattarocci, S.1
Shyian, M.2
Lemmens, L.3
Damay, P.4
Altintas, D.M.5
Shi, T.6
Bartholomew, C.R.7
Thomä, N.H.8
Hardy, C.F.9
Shore, D.10
-
30
-
-
80054000315
-
An EDMD mutation in C. elegans lamin blocks muscle-specific gene relocation and compromises muscle integrity
-
Mattout A., Pike B.L., Towbin B.D., Bank E.M., Gonzalez-Sandoval A., Stadler M.B., Meister P., Gruenbaum Y., Gasser S.M. An EDMD mutation in C. elegans lamin blocks muscle-specific gene relocation and compromises muscle integrity. Curr. Biol. 2011, 21:1603-1614.
-
(2011)
Curr. Biol.
, vol.21
, pp. 1603-1614
-
-
Mattout, A.1
Pike, B.L.2
Towbin, B.D.3
Bank, E.M.4
Gonzalez-Sandoval, A.5
Stadler, M.B.6
Meister, P.7
Gruenbaum, Y.8
Gasser, S.M.9
-
31
-
-
84873375779
-
Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence
-
Meuleman W., Peric-Hupkes D., Kind J., Beaudry J.B., Pagie L., Kellis M., Reinders M., Wessels L., van Steensel B. Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence. Genome Res. 2013, 23:270-280.
-
(2013)
Genome Res.
, vol.23
, pp. 270-280
-
-
Meuleman, W.1
Peric-Hupkes, D.2
Kind, J.3
Beaudry, J.B.4
Pagie, L.5
Kellis, M.6
Reinders, M.7
Wessels, L.8
van Steensel, B.9
-
32
-
-
30044438457
-
DNA replication origins fire stochastically in fission yeast
-
Patel P.K., Arcangioli B., Baker S.P., Bensimon A., Rhind N. DNA replication origins fire stochastically in fission yeast. Mol. Biol. Cell 2006, 17:308-316.
-
(2006)
Mol. Biol. Cell
, vol.17
, pp. 308-316
-
-
Patel, P.K.1
Arcangioli, B.2
Baker, S.P.3
Bensimon, A.4
Rhind, N.5
-
33
-
-
84902350415
-
Rif1 regulates initiation timing of late replication origins throughout the S. cerevisiae genome
-
Peace J.M., Ter-Zakarian A., Aparicio O.M. Rif1 regulates initiation timing of late replication origins throughout the S. cerevisiae genome. PLoS ONE 2014, 9:e98501.
-
(2014)
PLoS ONE
, vol.9
, pp. e98501
-
-
Peace, J.M.1
Ter-Zakarian, A.2
Aparicio, O.M.3
-
34
-
-
77952576224
-
Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation
-
Peric-Hupkes D., Meuleman W., Pagie L., Bruggeman S.W., Solovei I., Brugman W., Gräf S., Flicek P., Kerkhoven R.M., van Lohuizen M., et al. Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation. Mol. Cell 2010, 38:603-613.
-
(2010)
Mol. Cell
, vol.38
, pp. 603-613
-
-
Peric-Hupkes, D.1
Meuleman, W.2
Pagie, L.3
Bruggeman, S.W.4
Solovei, I.5
Brugman, W.6
Gräf, S.7
Flicek, P.8
Kerkhoven, R.M.9
van Lohuizen, M.10
-
35
-
-
84911478490
-
Topologically associating domains are stable units of replication-timing regulation
-
Pope B.D., Ryba T., Dileep V., Yue F., Wu W., Denas O., Vera D.L., Wang Y., Hansen R.S., Canfield T.K., et al. Topologically associating domains are stable units of replication-timing regulation. Nature 2014, 515:402-405.
-
(2014)
Nature
, vol.515
, pp. 402-405
-
-
Pope, B.D.1
Ryba, T.2
Dileep, V.3
Yue, F.4
Wu, W.5
Denas, O.6
Vera, D.L.7
Wang, Y.8
Hansen, R.S.9
Canfield, T.K.10
-
36
-
-
34247172579
-
Regulation of apoptosis and differentiation by p53 in human embryonic stem cells
-
Qin H., Yu T., Qing T., Liu Y., Zhao Y., Cai J., Li J., Song Z., Qu X., Zhou P., et al. Regulation of apoptosis and differentiation by p53 in human embryonic stem cells. J. Biol. Chem. 2007, 282:5842-5852.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 5842-5852
-
-
Qin, H.1
Yu, T.2
Qing, T.3
Liu, Y.4
Zhao, Y.5
Cai, J.6
Li, J.7
Song, Z.8
Qu, X.9
Zhou, P.10
-
37
-
-
40749122641
-
Transcriptional repression mediated by repositioning of genes to the nuclear lamina
-
Reddy K.L., Zullo J.M., Bertolino E., Singh H. Transcriptional repression mediated by repositioning of genes to the nuclear lamina. Nature 2008, 452:243-247.
-
(2008)
Nature
, vol.452
, pp. 243-247
-
-
Reddy, K.L.1
Zullo, J.M.2
Bertolino, E.3
Singh, H.4
-
39
-
-
84913533215
-
Histone lysine methylation and chromatin replication
-
Rivera C., Gurard-Levin Z.A., Almouzni G., Loyola A. Histone lysine methylation and chromatin replication. Biochim. Biophys. Acta 2014, 1839:1433-1439.
-
(2014)
Biochim. Biophys. Acta
, vol.1839
, pp. 1433-1439
-
-
Rivera, C.1
Gurard-Levin, Z.A.2
Almouzni, G.3
Loyola, A.4
-
40
-
-
84938843745
-
Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells
-
Rivera-Mulia J.C., Buckley Q., Sasaki T., Zimmerman J., Didier R.A., Nazor K., Loring J.F., Lian Z., Weissman S., Robins A.J., et al. Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells. Genome Res. 2015, 25:1091-1103.
-
(2015)
Genome Res.
, vol.25
, pp. 1091-1103
-
-
Rivera-Mulia, J.C.1
Buckley, Q.2
Sasaki, T.3
Zimmerman, J.4
Didier, R.A.5
Nazor, K.6
Loring, J.F.7
Lian, Z.8
Weissman, S.9
Robins, A.J.10
-
41
-
-
77952994784
-
Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types
-
Ryba T., Hiratani I., Lu J., Itoh M., Kulik M., Zhang J., Schulz T.C., Robins A.J., Dalton S., Gilbert D.M. Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types. Genome Res. 2010, 20:761-770.
-
(2010)
Genome Res.
, vol.20
, pp. 761-770
-
-
Ryba, T.1
Hiratani, I.2
Lu, J.3
Itoh, M.4
Kulik, M.5
Zhang, J.6
Schulz, T.C.7
Robins, A.J.8
Dalton, S.9
Gilbert, D.M.10
-
42
-
-
66149138883
-
Transcription initiation activity sets replication origin efficiency in mammalian cells
-
Sequeira-Mendes J., Díaz-Uriarte R., Apedaile A., Huntley D., Brockdorff N., Gómez M. Transcription initiation activity sets replication origin efficiency in mammalian cells. PLoS Genet. 2009, 5:e1000446.
-
(2009)
PLoS Genet.
, vol.5
, pp. e1000446
-
-
Sequeira-Mendes, J.1
Díaz-Uriarte, R.2
Apedaile, A.3
Huntley, D.4
Brockdorff, N.5
Gómez, M.6
-
43
-
-
84878892591
-
Rif1 and Rif2 shape telomere function and architecture through multivalent Rap1 interactions
-
Shi T., Bunker R.D., Mattarocci S., Ribeyre C., Faty M., Gut H., Scrima A., Rass U., Rubin S.M., Shore D., Thomä N.H. Rif1 and Rif2 shape telomere function and architecture through multivalent Rap1 interactions. Cell 2013, 153:1340-1353.
-
(2013)
Cell
, vol.153
, pp. 1340-1353
-
-
Shi, T.1
Bunker, R.D.2
Mattarocci, S.3
Ribeyre, C.4
Faty, M.5
Gut, H.6
Scrima, A.7
Rass, U.8
Rubin, S.M.9
Shore, D.10
Thomä, N.H.11
-
44
-
-
80052415369
-
Nuclear lamins in cell regulation and disease
-
Shimi T., Butin-Israeli V., Adam S.A., Goldman R.D. Nuclear lamins in cell regulation and disease. Cold Spring Harb. Symp. Quant. Biol. 2010, 75:525-531.
-
(2010)
Cold Spring Harb. Symp. Quant. Biol.
, vol.75
, pp. 525-531
-
-
Shimi, T.1
Butin-Israeli, V.2
Adam, S.A.3
Goldman, R.D.4
-
45
-
-
3543064379
-
Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint
-
Silverman J., Takai H., Buonomo S.B., Eisenhaber F., de Lange T. Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint. Genes Dev. 2004, 18:2108-2119.
-
(2004)
Genes Dev.
, vol.18
, pp. 2108-2119
-
-
Silverman, J.1
Takai, H.2
Buonomo, S.B.3
Eisenhaber, F.4
de Lange, T.5
-
46
-
-
84862277336
-
Functional diversification of yeast telomere associated protein, Rif1, in higher eukaryotes
-
Sreesankar E., Senthilkumar R., Bharathi V., Mishra R.K., Mishra K. Functional diversification of yeast telomere associated protein, Rif1, in higher eukaryotes. BMC Genomics 2012, 13:255.
-
(2012)
BMC Genomics
, vol.13
, pp. 255
-
-
Sreesankar, E.1
Senthilkumar, R.2
Bharathi, V.3
Mishra, R.K.4
Mishra, K.5
-
47
-
-
84900992807
-
Structural and biophysical characterization of murine rif1 C terminus reveals high specificity for DNA cruciform structures
-
Sukackaite R., Jensen M.R., Mas P.J., Blackledge M., Buonomo S.B., Hart D.J. Structural and biophysical characterization of murine rif1 C terminus reveals high specificity for DNA cruciform structures. J. Biol. Chem. 2014, 289:13903-13911.
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 13903-13911
-
-
Sukackaite, R.1
Jensen, M.R.2
Mas, P.J.3
Blackledge, M.4
Buonomo, S.B.5
Hart, D.J.6
-
48
-
-
84864527294
-
Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding
-
Takebayashi S., Dileep V., Ryba T., Dennis J.H., Gilbert D.M. Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding. Proc. Natl. Acad. Sci. USA 2012, 109:12574-12579.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 12574-12579
-
-
Takebayashi, S.1
Dileep, V.2
Ryba, T.3
Dennis, J.H.4
Gilbert, D.M.5
-
49
-
-
84155171119
-
Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing
-
Tanaka S., Nakato R., Katou Y., Shirahige K., Araki H. Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing. Curr. Biol. 2011, 21:2055-2063.
-
(2011)
Curr. Biol.
, vol.21
, pp. 2055-2063
-
-
Tanaka, S.1
Nakato, R.2
Katou, Y.3
Shirahige, K.4
Araki, H.5
-
50
-
-
0010465644
-
The mode of chromosome duplication in Crepis capillaris
-
Taylor J.H. The mode of chromosome duplication in Crepis capillaris. Exp. Cell Res. 1958, 15:350-357.
-
(1958)
Exp. Cell Res.
, vol.15
, pp. 350-357
-
-
Taylor, J.H.1
-
51
-
-
0001470477
-
Asynchronous duplication of chromosomes in cultured cells of Chinese hamster
-
Taylor J.H. Asynchronous duplication of chromosomes in cultured cells of Chinese hamster. J. Biophys. Biochem. Cytol. 1960, 7:455-464.
-
(1960)
J. Biophys. Biochem. Cytol.
, vol.7
, pp. 455-464
-
-
Taylor, J.H.1
-
52
-
-
84866479376
-
Telomere-binding protein Taz1 controls global replication timing through its localization near late replication origins in fission yeast
-
Tazumi A., Fukuura M., Nakato R., Kishimoto A., Takenaka T., Ogawa S., Song J.H., Takahashi T.S., Nakagawa T., Shirahige K., Masukata H. Telomere-binding protein Taz1 controls global replication timing through its localization near late replication origins in fission yeast. Genes Dev. 2012, 26:2050-2062.
-
(2012)
Genes Dev.
, vol.26
, pp. 2050-2062
-
-
Tazumi, A.1
Fukuura, M.2
Nakato, R.3
Kishimoto, A.4
Takenaka, T.5
Ogawa, S.6
Song, J.H.7
Takahashi, T.S.8
Nakagawa, T.9
Shirahige, K.10
Masukata, H.11
-
53
-
-
84887478181
-
Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins
-
Teytelman L., Thurtle D.M., Rine J., van Oudenaarden A. Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins. Proc. Natl. Acad. Sci. USA 2013, 110:18602-18607.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 18602-18607
-
-
Teytelman, L.1
Thurtle, D.M.2
Rine, J.3
van Oudenaarden, A.4
-
54
-
-
33644524404
-
Repo-Man recruits PP1 gamma to chromatin and is essential for cell viability
-
Trinkle-Mulcahy L., Andersen J., Lam Y.W., Moorhead G., Mann M., Lamond A.I. Repo-Man recruits PP1 gamma to chromatin and is essential for cell viability. J. Cell Biol. 2006, 172:679-692.
-
(2006)
J. Cell Biol.
, vol.172
, pp. 679-692
-
-
Trinkle-Mulcahy, L.1
Andersen, J.2
Lam, Y.W.3
Moorhead, G.4
Mann, M.5
Lamond, A.I.6
-
55
-
-
69449100367
-
Human RIF1 encodes an anti-apoptotic factor required for DNA repair
-
Wang H., Zhao A., Chen L., Zhong X., Liao J., Gao M., Cai M., Lee D.H., Li J., Chowdhury D., et al. Human RIF1 encodes an anti-apoptotic factor required for DNA repair. Carcinogenesis 2009, 30:1314-1319.
-
(2009)
Carcinogenesis
, vol.30
, pp. 1314-1319
-
-
Wang, H.1
Zhao, A.2
Chen, L.3
Zhong, X.4
Liao, J.5
Gao, M.6
Cai, M.7
Lee, D.H.8
Li, J.9
Chowdhury, D.10
-
56
-
-
61349201535
-
Establishing the program of origin firing during S phase in fission Yeast
-
Wu P.Y., Nurse P. Establishing the program of origin firing during S phase in fission Yeast. Cell 2009, 136:852-864.
-
(2009)
Cell
, vol.136
, pp. 852-864
-
-
Wu, P.Y.1
Nurse, P.2
-
57
-
-
77956886919
-
Rif1 provides a new DNA-binding interface for the Bloom syndrome complex to maintain normal replication
-
Xu D., Muniandy P., Leo E., Yin J., Thangavel S., Shen X., Ii M., Agama K., Guo R., Fox D., et al. Rif1 provides a new DNA-binding interface for the Bloom syndrome complex to maintain normal replication. EMBO J. 2010, 29:3140-3155.
-
(2010)
EMBO J.
, vol.29
, pp. 3140-3155
-
-
Xu, D.1
Muniandy, P.2
Leo, E.3
Yin, J.4
Thangavel, S.5
Shen, X.6
Ii, M.7
Agama, K.8
Guo, R.9
Fox, D.10
-
58
-
-
77957369058
-
Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture
-
Yaffe E., Farkash-Amar S., Polten A., Yakhini Z., Tanay A., Simon I. Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture. PLoS Genet. 2010, 6:e1001011.
-
(2010)
PLoS Genet.
, vol.6
, pp. e1001011
-
-
Yaffe, E.1
Farkash-Amar, S.2
Polten, A.3
Yakhini, Z.4
Tanay, A.5
Simon, I.6
-
59
-
-
84866427034
-
Rif1 regulates the replication timing domains on the human genome
-
Yamazaki S., Ishii A., Kanoh Y., Oda M., Nishito Y., Masai H. Rif1 regulates the replication timing domains on the human genome. EMBO J. 2012, 31:3667-3677.
-
(2012)
EMBO J.
, vol.31
, pp. 3667-3677
-
-
Yamazaki, S.1
Ishii, A.2
Kanoh, Y.3
Oda, M.4
Nishito, Y.5
Masai, H.6
-
60
-
-
84880928633
-
Replication timing regulation of eukaryotic replicons: Rif1 as a global regulator of replication timing
-
Yamazaki S., Hayano M., Masai H. Replication timing regulation of eukaryotic replicons: Rif1 as a global regulator of replication timing. Trends Genet. 2013, 29:449-460.
-
(2013)
Trends Genet.
, vol.29
, pp. 449-460
-
-
Yamazaki, S.1
Hayano, M.2
Masai, H.3
-
61
-
-
84900989853
-
The histone deacetylases sir2 and rpd3 act on ribosomal DNA to control the replication program in budding yeast
-
Yoshida K., Bacal J., Desmarais D., Padioleau I., Tsaponina O., Chabes A., Pantesco V., Dubois E., Parrinello H., Skrzypczak M., et al. The histone deacetylases sir2 and rpd3 act on ribosomal DNA to control the replication program in budding yeast. Mol. Cell 2014, 54:691-697.
-
(2014)
Mol. Cell
, vol.54
, pp. 691-697
-
-
Yoshida, K.1
Bacal, J.2
Desmarais, D.3
Padioleau, I.4
Tsaponina, O.5
Chabes, A.6
Pantesco, V.7
Dubois, E.8
Parrinello, H.9
Skrzypczak, M.10
-
62
-
-
84873488846
-
53BP1 regulates DSB repair using Rif1 to control 5' end resection
-
Zimmermann M., Lottersberger F., Buonomo S.B., Sfeir A., de Lange T. 53BP1 regulates DSB repair using Rif1 to control 5' end resection. Science 2013, 339:700-704.
-
(2013)
Science
, vol.339
, pp. 700-704
-
-
Zimmermann, M.1
Lottersberger, F.2
Buonomo, S.B.3
Sfeir, A.4
de Lange, T.5
-
63
-
-
84862639469
-
DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina
-
Zullo J.M., Demarco I.A., Piqué-Regi R., Gaffney D.J., Epstein C.B., Spooner C.J., Luperchio T.R., Bernstein B.E., Pritchard J.K., Reddy K.L., Singh H. DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina. Cell 2012, 149:1474-1487.
-
(2012)
Cell
, vol.149
, pp. 1474-1487
-
-
Zullo, J.M.1
Demarco, I.A.2
Piqué-Regi, R.3
Gaffney, D.J.4
Epstein, C.B.5
Spooner, C.J.6
Luperchio, T.R.7
Bernstein, B.E.8
Pritchard, J.K.9
Reddy, K.L.10
Singh, H.11
|