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Volumn 26, Issue 2, 2016, Pages 183-191

Exome sequencing and CRISPR/Cas genome editing identify mutations of ZAK as a cause of limb defects in humans and mice

(23)  Spielmann, Malte a,b,c   Kakar, Naseebullah d,e   Tayebi, Naeimeh a   Leettola, Catherine f   Nürnberg, Gudrun g   Sowada, Nadine d   Lupiáñez, Darío G a,b,h   Harabula, Izabela a   Flottmann, Ricarda b   Horn, Denise b   Chan, Wing Lee b   Wittler, Lars a   Yilmaz, Rüstem d   Altmüller, Janine g   Thiele, Holger g   Van Bokhoven, Hans i   Schwartz, Charles E j   Nürnberg, Peter g,k   Bowie, James U f   Ahmad, Jamil e   more..


Author keywords

[No Author keywords available]

Indexed keywords

CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN; DNA; GUIDE RNA; PROTEIN KINASE; PROTEIN KINASE ZAK; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; CAS9 ENDONUCLEASE STREPTOCOCCUS PYOGENES; ENDONUCLEASE; MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE; ZAK PROTEIN, HUMAN; ZAK PROTEIN, MOUSE;

EID: 84956905665     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.199430.115     Document Type: Article
Times cited : (47)

References (44)
  • 1
    • 0036175541 scopus 로고    scopus 로고
    • The synpolydactyly homolog (spdh) mutation in the mouse: A defect in patterning and growth of limb cartilage elements
    • Albrecht AN, Schwabe GC, Stricker S, Boddrich A, Wanker EE, Mundlos S. 2002. The synpolydactyly homolog (spdh) mutation in the mouse: a defect in patterning and growth of limb cartilage elements. Mech Dev 112: 53-67.
    • (2002) Mech Dev , vol.112 , pp. 53-67
    • Albrecht, A.N.1    Schwabe, G.C.2    Stricker, S.3    Boddrich, A.4    Wanker, E.E.5    Mundlos, S.6
  • 2
    • 79952278792 scopus 로고    scopus 로고
    • Generation of chimeras by aggregation of embryonic stem cells with diploid or tetraploid mouse embryos
    • Artus J, Hadjantonakis AK. 2011. Generation of chimeras by aggregation of embryonic stem cells with diploid or tetraploid mouse embryos. Methods Mol Biol 693: 37-56.
    • (2011) Methods Mol Biol , vol.693 , pp. 37-56
    • Artus, J.1    Hadjantonakis, A.K.2
  • 6
    • 64249088350 scopus 로고    scopus 로고
    • ZAK induces MMP-2 activity via JNK/p38 signals and reduces MMP-9 activity by increasing TIMP-1/2 expression in H9c2 cardiomyoblast cells
    • Cheng YC, Kuo WW, Wu HC, Lai TY, Wu CH, Hwang JM, Wang WH, Tsai FJ, Yang JJ, Huang CY, et al. 2009. ZAK induces MMP-2 activity via JNK/p38 signals and reduces MMP-9 activity by increasing TIMP-1/2 expression in H9c2 cardiomyoblast cells. Mol Cell Biochem 325: 69-77.
    • (2009) Mol Cell Biochem , vol.325 , pp. 69-77
    • Cheng, Y.C.1    Kuo, W.W.2    Wu, H.C.3    Lai, T.Y.4    Ch, W.5    Hwang, J.M.6    Wang, W.H.7    Tsai, F.J.8    Yang, J.J.9    Huang, C.Y.10
  • 7
    • 84929147435 scopus 로고    scopus 로고
    • Increasing the efficiency of homology-directed repair for CRISPR-Cas9-induced precise gene editing in mammalian cells
    • Chu VT, Weber T, Wefers B, Wurst W, Sander S, Rajewsky K, Kuhn R. 2015. Increasing the efficiency of homology-directed repair for CRISPR-Cas9-induced precise gene editing in mammalian cells. Nat Biotechnol 33: 543-548.
    • (2015) Nat Biotechnol , vol.33 , pp. 543-548
    • Chu, V.T.1    Weber, T.2    Wefers, B.3    Wurst, W.4    Sander, S.5    Rajewsky, K.6    Kuhn, R.7
  • 13
    • 0035830855 scopus 로고    scopus 로고
    • Identification and characterization of a novel MAP kinase kinase kinase, MLTK
    • Gotoh I, Adachi M, Nishida E. 2001. Identification and characterization of a novel MAP kinase kinase kinase, MLTK. J Biol Chem 276: 4276-4286.
    • (2001) J Biol Chem , vol.276 , pp. 4276-4286
    • Gotoh, I.1    Adachi, M.2    Nishida, E.3
  • 17
    • 0034853426 scopus 로고    scopus 로고
    • The use of Preyer's reflex in evaluation of hearing in mice
    • Jero J, Coling DE, Lalwani AK. 2001. The use of Preyer's reflex in evaluation of hearing in mice. Acta Otolaryngol 121: 585-589.
    • (2001) Acta Otolaryngol , vol.121 , pp. 585-589
    • Jero, J.1    De, C.2    Lalwani, A.K.3
  • 18
    • 84929119576 scopus 로고    scopus 로고
    • Leveraging the power of high performance computing for next generation sequencing data analysis: Tricks and twists from a high throughput exome workflow
    • Kawalia A, Motameny S, Wonczak S, Thiele H, Nieroda L, Jabbari K, Borowski S, Sinha V, Gunia W, Lang U, et al. 2015. Leveraging the power of high performance computing for next generation sequencing data analysis: tricks and twists from a high throughput exome workflow. PLoS One 10: e0126321.
    • (2015) PLoS One , vol.10 , pp. e0126321
    • Kawalia, A.1    Motameny, S.2    Wonczak, S.3    Thiele, H.4    Nieroda, L.5    Jabbari, K.6    Borowski, S.7    Sinha, V.8    Gunia, W.9    Lang, U.10
  • 19
    • 63849246525 scopus 로고    scopus 로고
    • Protein structure prediction on the Web: A case study using the Phyre server
    • Kelley LA, Sternberg MJ. 2009. Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 4: 363-371.
    • (2009) Nat Protoc , vol.4 , pp. 363-371
    • Kelley, L.A.1    Sternberg, M.J.2
  • 23
    • 84903666144 scopus 로고    scopus 로고
    • Characterization of the SAM domain of the PKD-related protein ANKS6 and its interaction with ANKS3
    • Leettola CN, Knight MJ, Cascio D, Hoffman S, Bowie JU. 2014. Characterization of the SAM domain of the PKD-related protein ANKS6 and its interaction with ANKS3. BMC Struct Biol 14: 17.
    • (2014) BMC Struct Biol , vol.14 , pp. 17
    • Leettola, C.N.1    Knight, M.J.2    Cascio, D.3    Hoffman, S.4    Bowie, J.U.5
  • 24
    • 77953229115 scopus 로고    scopus 로고
    • The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
    • Lieber MR. 2010. The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu Rev Biochem 79: 181-211.
    • (2010) Annu Rev Biochem , vol.79 , pp. 181-211
    • Lieber, M.R.1
  • 27
    • 84891783452 scopus 로고    scopus 로고
    • The Database of Genomic Variants: A curated collection of structural variation in the human genome
    • MacDonald JR, Ziman R, Yuen RK, Feuk L, Scherer SW. 2014. The Database of Genomic Variants: a curated collection of structural variation in the human genome. Nucleic Acids Res 42: D986-D992.
    • (2014) Nucleic Acids Res , vol.42 , pp. D986-D992
    • MacDonald, J.R.1    Ziman, R.2    Yuen, R.K.3    Feuk, L.4    Scherer, S.W.5
  • 29
    • 34147099150 scopus 로고    scopus 로고
    • Clinical and molecular characterization of a patient with a 2q31.2-32.3 deletion identified by array-CGH
    • Mencarelli MA, Caselli R, Pescucci C, Hayek G, Zappella M, Renieri A, Mari F. 2007. Clinical and molecular characterization of a patient with a 2q31.2-32.3 deletion identified by array-CGH. Am J Med Genet A 143A: 858-865.
    • (2007) Am J Med Genet A , vol.143 A , pp. 858-865
    • Ma, M.1    Caselli, R.2    Pescucci, C.3    Hayek, G.4    Zappella, M.5    Renieri, A.6    Mari, F.7
  • 30
    • 47149086000 scopus 로고    scopus 로고
    • Detection of known and novel genomic rearrangements by array based comparative genomic hybridisation: Deletion of ZNF533 and duplication of CHARGE syndrome genes
    • Monfort S, Rosello M, Orellana C, Oltra S, Blesa D, Kok K, Ferrer I, Cigudosa JC, Martinez F. 2008. Detection of known and novel genomic rearrangements by array based comparative genomic hybridisation: deletion of ZNF533 and duplication of CHARGE syndrome genes. J Med Genet 45: 432-437.
    • (2008) J Med Genet , vol.45 , pp. 432-437
    • Monfort, S.1    Rosello, M.2    Orellana, C.3    Oltra, S.4    Blesa, D.5    Kok, K.6    Ferrer, I.7    Cigudosa, J.C.8    Martinez, F.9
  • 31
    • 0029954477 scopus 로고    scopus 로고
    • Morphological and molecular characterization of retinoic acid-induced limb duplications in mice
    • Niederreither K, Ward SJ, Dolle P, Chambon P. 1996. Morphological and molecular characterization of retinoic acid-induced limb duplications in mice. Dev Biol 176: 185-198.
    • (1996) Dev Biol , vol.176 , pp. 185-198
    • Niederreither, K.1    Ward, S.J.2    Dolle, P.3    Chambon, P.4
  • 32
    • 79953176250 scopus 로고    scopus 로고
    • Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor
    • Ruf S, Symmons O, Uslu VV, Dolle D, Hot C, Ettwiller L, Spitz F.2011. Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor. Nat Genet 43: 379-386.
    • (2011) Nat Genet , vol.43 , pp. 379-386
    • Ruf, S.1    Symmons, O.2    Uslu, V.V.3    Dolle, D.4    Hot, C.5    Ettwiller, L.6    Spitz, F.7
  • 34
    • 84929666410 scopus 로고    scopus 로고
    • Expanding the biologist's toolkit with CRISPR-Cas9
    • Sternberg SH, Doudna JA. 2015. Expanding the biologist's toolkit with CRISPR-Cas9. Mol Cell 58: 568-574.
    • (2015) Mol Cell , vol.58 , pp. 568-574
    • Sternberg, S.H.1    Doudna, J.A.2
  • 35
    • 84864305609 scopus 로고    scopus 로고
    • The protein kinase MLTK regulates chondrogenesis by inducing the transcription factor Sox6
    • Suzuki T, Kusakabe M, Nakayama K, Nishida E. 2012. The protein kinase MLTK regulates chondrogenesis by inducing the transcription factor Sox6. Development 139: 2988-2998.
    • (2012) Development , vol.139 , pp. 2988-2998
    • Suzuki, T.1    Kusakabe, M.2    Nakayama, K.3    Nishida, E.4
  • 37
    • 49649122346 scopus 로고    scopus 로고
    • Homozygous WNT10b mutation and complex inheritance in Split-Hand/Foot malformation
    • Ugur SA, Tolun A. 2008. Homozygous WNT10b mutation and complex inheritance in Split-Hand/Foot malformation. Hum Mol Genet 17: 2644-2653.
    • (2008) Hum Mol Genet , vol.17 , pp. 2644-2653
    • Ugur, S.A.1    Tolun, A.2
  • 39
    • 84877707375 scopus 로고    scopus 로고
    • One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering
    • Wang H, Yang H, Shivalila CS, Dawlaty MM, Cheng AW, Zhang F, Jaenisch R. 2013. One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell 153: 910-918.
    • (2013) Cell , vol.153 , pp. 910-918
    • Wang, H.1    Yang, H.2    Shivalila, C.S.3    Dawlaty, M.M.4    Cheng, A.W.5    Zhang, F.6    Jaenisch, R.7
  • 40
    • 84894619225 scopus 로고    scopus 로고
    • A chemoproteomic platformtoquantitatively map targetsof lipid-derived electrophiles
    • Wang C, Weerapana E, Blewett MM, Cravatt BF. 2014a. A chemoproteomic platformtoquantitatively map targetsof lipid-derived electrophiles. Nat Methods 11: 79-85.
    • (2014) Nat Methods , vol.11 , pp. 79-85
    • Wang, C.1    Weerapana, E.2    Blewett, M.M.3    Cravatt, B.F.4
  • 41
    • 84906063614 scopus 로고    scopus 로고
    • All-trans-retinoid acid (ATRA) suppresses chondrogenesis of rat primary hind limb bud mesenchymal cells by downregulating p63 and cartilage-specific molecules
    • Wang YG, Xie P, Wang YG, Li XD, Zhang TG, Liu ZY, Hong Q, Du SX. 2014b. All-trans-retinoid acid (ATRA) suppresses chondrogenesis of rat primary hind limb bud mesenchymal cells by downregulating p63 and cartilage-specific molecules. Environ Toxicol Pharmacol 38: 460-468.
    • (2014) Environ Toxicol Pharmacol , vol.38 , pp. 460-468
    • Wang, Y.G.1    Xie, P.2    Wang, Y.G.3    Li, X.D.4    Zhang, T.G.5    Liu, Z.Y.6    Hong, Q.7    Du, S.X.8
  • 42
    • 0037474527 scopus 로고    scopus 로고
    • A novel zinc finger protein, ZZaPK, interacts with ZAK and stimulates the ZAK-expressing cells re-entering the cell cycle
    • Yang JJ. 2003. A novel zinc finger protein, ZZaPK, interacts with ZAK and stimulates the ZAK-expressing cells re-entering the cell cycle. Biochem Biophys Res Commun 301: 71-77.
    • (2003) Biochem Biophys Res Commun , vol.301 , pp. 71-77
    • Yang, J.J.1
  • 44
    • 33847057887 scopus 로고    scopus 로고
    • Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells
    • Yang A, Zhu Z, Kapranov P, McKeon F, Church GM, Gingeras TR, Struhl K. 2006. Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells. Mol Cell 24: 593-602.
    • (2006) Mol Cell , vol.24 , pp. 593-602
    • Yang, A.1    Zhu, Z.2    Kapranov, P.3    McKeon, F.4    Church, G.M.5    Gingeras, T.R.6    Struhl, K.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.