-
1
-
-
52449089918
-
The type strain of Lactobacillus casei is ATCC 393, ATCC 334 cannot serve as the type because it represents a different taxon, the name Lactobacillus paracasei and its subspecies names are not rejected and the revival of the name "Lactobacillus zeae" contravenes rules 51b (1) and (2) of the International Code of Nomenclature of Bacteria. Opinion 82
-
Tindall BJ. 2008. The type strain of Lactobacillus casei is ATCC 393, ATCC 334 cannot serve as the type because it represents a different taxon, the name Lactobacillus paracasei and its subspecies names are not rejected and the revival of the name "Lactobacillus zeae" contravenes rules 51b (1) and (2) of the International Code of Nomenclature of Bacteria. Opinion 82. Int J Syst Evol Microbiol 58:1764-1765. http://dx.doi.org/10.1099/ijs.0.2008/005330-0.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 1764-1765
-
-
Tindall, B.J.1
-
2
-
-
0030032849
-
Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp. casei, and rejection of the name Lactobacillus paracasei
-
Dicks LM, Du Plessis EM, Dellaglio F, Lauer E. 1996. Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp. casei, and rejection of the name Lactobacillus paracasei. Int J Syst Bacteriol 46:337-340. http://dx.doi.org/10.1099/00207713-46-1-337.
-
(1996)
Int J Syst Bacteriol
, vol.46
, pp. 337-340
-
-
Dicks, L.M.1
Du Plessis, E.M.2
Dellaglio, F.3
Lauer, E.4
-
3
-
-
0036153759
-
The status of the species Lactobacillus casei (Orla-Jensen 1916) Hansen and Lessel 1971 and Lactobacillus paracasei Collins et al. 1989. Request for an opinion
-
Dellaglio F, Felis GE, Torriani S. 2002. The status of the species Lactobacillus casei (Orla-Jensen 1916) Hansen and Lessel 1971 and Lactobacillus paracasei Collins et al. 1989. Request for an opinion. Int J Syst Evol Microbiol 52:285-287. http://dx.doi.org/10.1099/00207713-52-1-285.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 285-287
-
-
Dellaglio, F.1
Felis, G.E.2
Torriani, S.3
-
4
-
-
0024511136
-
Deoxyribonucleic acid homology studies of Lactobacillus casei, Lactobacillus paracasei sp. nov., subsp. paracasei and subsp. tolerans, and Lactobacillus rhamnosus sp. nov., comb nov
-
Collins MD, Phillips BA, Zanoni P. 1989. Deoxyribonucleic acid homology studies of Lactobacillus casei, Lactobacillus paracasei sp. nov., subsp. paracasei and subsp. tolerans, and Lactobacillus rhamnosus sp. nov., comb nov. Int J Syst Evol Microbiol 39:105-108.
-
(1989)
Int J Syst Evol Microbiol
, vol.39
, pp. 105-108
-
-
Collins, M.D.1
Phillips, B.A.2
Zanoni, P.3
-
5
-
-
33748113107
-
Discrimination of dairy industry isolates of the Lactobacillus casei group
-
Desai AR, Shah NP, Powell IB. 2006. Discrimination of dairy industry isolates of the Lactobacillus casei group. J Dairy Sci 89:3345-3351. http://dx.doi.org/10.3168/jds.S0022-0302(06)72371-2.
-
(2006)
J Dairy Sci
, vol.89
, pp. 3345-3351
-
-
Desai, A.R.1
Shah, N.P.2
Powell, I.B.3
-
6
-
-
49449101678
-
Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria
-
Liu M, Nauta A, Francke C, Siezen RJ. 2008. Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria. Appl Environ Microbiol 74:4590-4600. http://dx.doi.org/10.1128/AEM.00150-08.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4590-4600
-
-
Liu, M.1
Nauta, A.2
Francke, C.3
Siezen, R.J.4
-
7
-
-
0034727793
-
Probiotic bacteria: safety, functional and technological properties
-
Saarela M, Mogensen G, Fondén R, Mättö J, Mattila-Sandholm T. 2000. Probiotic bacteria: safety, functional and technological properties. J Biotechnol 84:197-215. http://dx.doi.org/10.1016/S0168-1656(00)00375-8.
-
(2000)
J Biotechnol
, vol.84
, pp. 197-215
-
-
Saarela, M.1
Mogensen, G.2
Fondén, R.3
Mättö, J.4
Mattila-Sandholm, T.5
-
8
-
-
70349091770
-
Diversity among Lactobacillus paracasei phages isolated from a probiotic dairy product plant
-
Capra ML, Binetti AG, Mercanti DJ, Quiberoni A, Reinheimer JA. 2009. Diversity among Lactobacillus paracasei phages isolated from a probiotic dairy product plant. J Appl Microbiol 107:1350-1357. http://dx.doi.org/10.1111/j.1365-2672.2009.04313.x.
-
(2009)
J Appl Microbiol
, vol.107
, pp. 1350-1357
-
-
Capra, M.L.1
Binetti, A.G.2
Mercanti, D.J.3
Quiberoni, A.4
Reinheimer, J.A.5
-
9
-
-
54049144666
-
Lysogeny in Lactobacillus delbrueckii strains and characterization of two new temperate prolate-headed bacteriophages
-
Suarez V, Zago M, Quiberoni A, Carminati D, Giraffa G, Reinheimer J. 2008. Lysogeny in Lactobacillus delbrueckii strains and characterization of two new temperate prolate-headed bacteriophages. J Appl Microbiol 105: 1402-1411. http://dx.doi.org/10.1111/j.1365-2672.2008.03876.x.
-
(2008)
J Appl Microbiol
, vol.105
, pp. 1402-1411
-
-
Suarez, V.1
Zago, M.2
Quiberoni, A.3
Carminati, D.4
Giraffa, G.5
Reinheimer, J.6
-
10
-
-
78649995645
-
Widely distributed lysogeny in probiotic lactobacilli represents a potentially high risk for the fermentative dairy industry
-
Mercanti DJ, Carminati D, Reinheimer JA, Quiberoni A. 2011. Widely distributed lysogeny in probiotic lactobacilli represents a potentially high risk for the fermentative dairy industry. Int J Food Microbiol 144:503-510. http://dx.doi.org/10.1016/j.ijfoodmicro.2010.11.009.
-
(2011)
Int J Food Microbiol
, vol.144
, pp. 503-510
-
-
Mercanti, D.J.1
Carminati, D.2
Reinheimer, J.A.3
Quiberoni, A.4
-
11
-
-
0034774475
-
Phages of dairy bacteria
-
Brussow H. 2001. Phages of dairy bacteria. Annu Rev Microbiol 55:283-303. http://dx.doi.org/10.1146/annurev.micro.55.1.283.
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 283-303
-
-
Brussow, H.1
-
12
-
-
34748891057
-
Curated list of prokaryote viruses with fully sequenced genomes
-
Ackermann HW, Kropinski AM. 2007. Curated list of prokaryote viruses with fully sequenced genomes. Res Microbiol 158:555-566. http://dx.doi.org/10.1016/j.resmic.2007.07.006.
-
(2007)
Res Microbiol
, vol.158
, pp. 555-566
-
-
Ackermann, H.W.1
Kropinski, A.M.2
-
13
-
-
84893688730
-
Current taxonomy of phages infecting lactic acid bacteria
-
Mahony J, van Sinderen D. 2014. Current taxonomy of phages infecting lactic acid bacteria. Front Microbiol 5:7.
-
(2014)
Front Microbiol
, vol.5
, pp. 7
-
-
Mahony, J.1
van Sinderen, D.2
-
14
-
-
77955513051
-
Streptococcus thermophilus bacteriophages
-
Quiberoni A, Moineau S, Rousseau G, Reinheimer J, Ackermann H-W. 2010. Streptococcus thermophilus bacteriophages. Int Dairy J 20:657-664. http://dx.doi.org/10.1016/j.idairyj.2010.03.012.
-
(2010)
Int Dairy J
, vol.20
, pp. 657-664
-
-
Quiberoni, A.1
Moineau, S.2
Rousseau, G.3
Reinheimer, J.4
Ackermann, H.-W.5
-
15
-
-
80055014874
-
Group-specific comparison of four lactobacilli isolated from human sources using differential blast analysis
-
Altermann E, Klaenhammer TR. 2011. Group-specific comparison of four lactobacilli isolated from human sources using differential blast analysis. Genes Nutr 6:319-340. http://dx.doi.org/10.1007/s12263-010-0191-9.
-
(2011)
Genes Nutr
, vol.6
, pp. 319-340
-
-
Altermann, E.1
Klaenhammer, T.R.2
-
16
-
-
33646572506
-
Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei
-
Ventura M, Canchaya C, Bernini V, Altermann E, Barrangou R, McGrath S, Claesson MJ, Li Y, Leahy S, Walker CD, Zink R, Neviani E, Steele J, Broadbent J, Klaenhammer TR, Fitzgerald GF, O'Toole PW, van Sinderen D. 2006. Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei. Appl Environ Microbiol 72: 3130-3146. http://dx.doi.org/10.1128/AEM.72.5.3130-3146.2006.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 3130-3146
-
-
Ventura, M.1
Canchaya, C.2
Bernini, V.3
Altermann, E.4
Barrangou, R.5
McGrath, S.6
Claesson, M.J.7
Li, Y.8
Leahy, S.9
Walker, C.D.10
Zink, R.11
Neviani, E.12
Steele, J.13
Broadbent, J.14
Klaenhammer, T.R.15
Fitzgerald, G.F.16
O'Toole, P.W.17
van Sinderen, D.18
-
17
-
-
0032798540
-
Primary structure and features of the genome of the Lactobacillus gasseri temperate bacteriophage (phi)adh
-
Altermann E, Klein JR, Henrich B. 1999. Primary structure and features of the genome of the Lactobacillus gasseri temperate bacteriophage (phi)adh. Gene 236:333-346. http://dx.doi.org/10.1016/S0378-1119(99)00236-X.
-
(1999)
Gene
, vol.236
, pp. 333-346
-
-
Altermann, E.1
Klein, J.R.2
Henrich, B.3
-
18
-
-
84899841674
-
Spontaneously induced prophages in Lactobacillus gasseri contribute to horizontal gene transfer
-
Baugher JL, Durmaz E, Klaenhammer TR. 2014. Spontaneously induced prophages in Lactobacillus gasseri contribute to horizontal gene transfer. Appl Environ Microbiol 80:3508-3517. http://dx.doi.org/10.1128/AEM.04092-13.
-
(2014)
Appl Environ Microbiol
, vol.80
, pp. 3508-3517
-
-
Baugher, J.L.1
Durmaz, E.2
Klaenhammer, T.R.3
-
19
-
-
0038782101
-
Integration and distribution of Lactobacillus johnsonii prophages
-
Ventura M, Canchaya C, Pridmore D, Berger B, Brussow H. 2003. Integration and distribution of Lactobacillus johnsonii prophages. J Bacteriol 185: 4603-4608. http://dx.doi.org/10.1128/JB.185.15.4603-4608.2003.
-
(2003)
J Bacteriol
, vol.185
, pp. 4603-4608
-
-
Ventura, M.1
Canchaya, C.2
Pridmore, D.3
Berger, B.4
Brussow, H.5
-
20
-
-
1542375392
-
The prophages of Lactobacillus johnsonii NCC 533: comparative genomics and transcription analysis
-
Ventura M, Canchaya C, Pridmore RD, Brussow H. 2004. The prophages of Lactobacillus johnsonii NCC 533: comparative genomics and transcription analysis. Virology 320:229-242. http://dx.doi.org/10.1016/j.virol.2003.11.034.
-
(2004)
Virology
, vol.320
, pp. 229-242
-
-
Ventura, M.1
Canchaya, C.2
Pridmore, R.D.3
Brussow, H.4
-
21
-
-
0034734832
-
Comparative genomics of the late gene cluster from Lactobacillus phages
-
Desiere F, Pridmore RD, Brussow H. 2000. Comparative genomics of the late gene cluster from Lactobacillus phages. Virology 275:294-305. http://dx.doi.org/10.1006/viro.2000.0498.
-
(2000)
Virology
, vol.275
, pp. 294-305
-
-
Desiere, F.1
Pridmore, R.D.2
Brussow, H.3
-
22
-
-
0031039129
-
Genome structure of the Lactobacillus temperate phage phi g1e: the whole genome sequence and the putative promoter/repressor system
-
Kodaira KI, Oki M, Kakikawa M, Watanabe N, Hirakawa M, Yamada K, Taketo A. 1997. Genome structure of the Lactobacillus temperate phage phi g1e: the whole genome sequence and the putative promoter/repressor system. Gene 187:45-53. http://dx.doi.org/10.1016/S0378-1119(96)00687-7.
-
(1997)
Gene
, vol.187
, pp. 45-53
-
-
Kodaira, K.I.1
Oki, M.2
Kakikawa, M.3
Watanabe, N.4
Hirakawa, M.5
Yamada, K.6
Taketo, A.7
-
23
-
-
0344982836
-
The prophage sequences of Lactobacillus plantarum strain WCFS1
-
Ventura M, Canchaya C, Kleerebezem M, de Vos WM, Siezen RJ, Brussow H. 2003. The prophage sequences of Lactobacillus plantarum strain WCFS1. Virology 316:245-255. http://dx.doi.org/10.1016/j.virol.2003.08.019.
-
(2003)
Virology
, vol.316
, pp. 245-255
-
-
Ventura, M.1
Canchaya, C.2
Kleerebezem, M.3
de Vos, W.M.4
Siezen, R.J.5
Brussow, H.6
-
24
-
-
84871019196
-
Characterization of two virulent phages of Lactobacillus plantarum
-
Briggiler Marco M, Garneau JE, Tremblay D, Quiberoni A, Moineau S. 2012. Characterization of two virulent phages of Lactobacillus plantarum. Appl Environ Microbiol 78:8719-8734. http://dx.doi.org/10.1128/AEM.02565-12.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 8719-8734
-
-
Briggiler Marco, M.1
Garneau, J.E.2
Tremblay, D.3
Quiberoni, A.4
Moineau, S.5
-
25
-
-
15744371456
-
Sequence analysis of the Lactobacillus plantarum bacteriophage φJL-1
-
Lu Z, Altermann E, Breidt F, Predki P, Fleming HP, Klaenhammer TR. 2005. Sequence analysis of the Lactobacillus plantarum bacteriophage φJL-1. Gene 348:45-54. http://dx.doi.org/10.1016/j.gene.2004.12.052.
-
(2005)
Gene
, vol.348
, pp. 45-54
-
-
Lu, Z.1
Altermann, E.2
Breidt, F.3
Predki, P.4
Fleming, H.P.5
Klaenhammer, T.R.6
-
26
-
-
6044223543
-
Lactobacillus plantarum bacteriophage LP65: a new member of the SPO1-like genus of the family Myoviridae
-
Chibani-Chennoufi S, Dillmann ML, Marvin-Guy L, Rami-Shojaei S, Brussow H. 2004. Lactobacillus plantarum bacteriophage LP65: a new member of the SPO1-like genus of the family Myoviridae. J Bacteriol 186: 7069-7083. http://dx.doi.org/10.1128/JB.186.21.7069-7083.2004.
-
(2004)
J Bacteriol
, vol.186
, pp. 7069-7083
-
-
Chibani-Chennoufi, S.1
Dillmann, M.L.2
Marvin-Guy, L.3
Rami-Shojaei, S.4
Brussow, H.5
-
27
-
-
80052272946
-
Sequence analysis of the Lactobacillus temperate phage Sha1
-
Yoon BH, Jang SH, Chang HI. 2011. Sequence analysis of the Lactobacillus temperate phage Sha1. Arch Virol 156:1681-1684. http://dx.doi.org/10.1007/s00705-011-1048-2.
-
(2011)
Arch Virol
, vol.156
, pp. 1681-1684
-
-
Yoon, B.H.1
Jang, S.H.2
Chang, H.I.3
-
28
-
-
0038385828
-
Analysis of the morphogenetic cluster and genome of the temperate Lactobacillus casei bacteriophage A2
-
Garcia P, Ladero V, Suarez JE. 2003. Analysis of the morphogenetic cluster and genome of the temperate Lactobacillus casei bacteriophage A2. Arch Virol 148:1051-1070. http://dx.doi.org/10.1007/s00705-003-0008-x.
-
(2003)
Arch Virol
, vol.148
, pp. 1051-1070
-
-
Garcia, P.1
Ladero, V.2
Suarez, J.E.3
-
29
-
-
23244458798
-
Complete genomic sequence of the temperate bacteriophage PhiAT3 isolated from Lactobacillus casei ATCC 393
-
Lo TC, Shih TC, Lin CF, Chen HW, Lin TH. 2005. Complete genomic sequence of the temperate bacteriophage PhiAT3 isolated from Lactobacillus casei ATCC 393. Virology 339:42-55. http://dx.doi.org/10.1016/j.virol.2005.05.022.
-
(2005)
Virology
, vol.339
, pp. 42-55
-
-
Lo, T.C.1
Shih, T.C.2
Lin, C.F.3
Chen, H.W.4
Lin, T.H.5
-
30
-
-
49449089578
-
Genome sequence and characteristics of Lrm1, a prophage from industrial Lactobacillus rhamnosus strain M1
-
Durmaz E, Miller M, Azcarate-Peril M, Toon S, Klaenhammer T. 2008. Genome sequence and characteristics of Lrm1, a prophage from industrial Lactobacillus rhamnosus strain M1. Appl Environ Microbiol 74:4601-4609. http://dx.doi.org/10.1128/AEM.00010-08.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4601-4609
-
-
Durmaz, E.1
Miller, M.2
Azcarate-Peril, M.3
Toon, S.4
Klaenhammer, T.5
-
31
-
-
33646004914
-
The genome of the virulent phage Lc-Nu of probiotic Lactobacillus rhamnosus, and comparative genomics with Lactobacillus casei phages
-
Tuohimaa A, Riipinen KA, Brandt K, Alatossava T. 2006. The genome of the virulent phage Lc-Nu of probiotic Lactobacillus rhamnosus, and comparative genomics with Lactobacillus casei phages. Arch Virol 151: 947-965. http://dx.doi.org/10.1007/s00705-005-0672-0.
-
(2006)
Arch Virol
, vol.151
, pp. 947-965
-
-
Tuohimaa, A.1
Riipinen, K.A.2
Brandt, K.3
Alatossava, T.4
-
32
-
-
84998865500
-
Complete genome sequences of Lactobacillus phages J-1 and PL-1
-
Dieterle ME, Jacobs-Sera D, Russell D, Hatfull G, Piuri M. 2014. Complete genome sequences of Lactobacillus phages J-1 and PL-1. Genome Announc 2:e00998-13. http://dx.doi.org/10.1128/genomeA.00998-13.
-
(2014)
Genome Announc
, vol.2
-
-
Dieterle, M.E.1
Jacobs-Sera, D.2
Russell, D.3
Hatfull, G.4
Piuri, M.5
-
33
-
-
0028172245
-
Characterization of φ393-A2, a bacteriophage that infects Lactobacillus casei
-
Herrero M, de los Reyes-Gavilán CG, Caso JL, Suárez JE. 1994. Characterization of φ393-A2, a bacteriophage that infects Lactobacillus casei. Microbiology 140:2585-2590. http://dx.doi.org/10.1099/00221287-140-10-2585.
-
(1994)
Microbiology
, vol.140
, pp. 2585-2590
-
-
Herrero, M.1
de los Reyes-Gavilán, C.G.2
Caso, J.L.3
Suárez, J.E.4
-
34
-
-
0036838138
-
The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria
-
Proux C, van Sinderen D, Suarez J, Garcia P, Ladero V, Fitzgerald GF, Desiere F, Brussow H. 2002. The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria. J Bacteriol 184:6026-6036. http://dx.doi.org/10.1128/JB.184.21.6026-6036.2002.
-
(2002)
J Bacteriol
, vol.184
, pp. 6026-6036
-
-
Proux, C.1
van Sinderen, D.2
Suarez, J.3
Garcia, P.4
Ladero, V.5
Fitzgerald, G.F.6
Desiere, F.7
Brussow, H.8
-
35
-
-
70349783610
-
Genome of a virulent bacteriophage Lb338-1 that lyses the probiotic Lactobacillus paracasei cheese strain
-
Alemayehu D, Ross RP, O'Sullivan O, Coffey A, Stanton C, Fitzgerald GF, McAuliffe O. 2009. Genome of a virulent bacteriophage Lb338-1 that lyses the probiotic Lactobacillus paracasei cheese strain. Gene 448:29-39. http://dx.doi.org/10.1016/j.gene.2009.08.008.
-
(2009)
Gene
, vol.448
, pp. 29-39
-
-
Alemayehu, D.1
Ross, R.P.2
O'Sullivan, O.3
Coffey, A.4
Stanton, C.5
Fitzgerald, G.F.6
McAuliffe, O.7
-
36
-
-
84880649795
-
Characterization of the genome of the dairy Lactobacillus helveticus bacteriophage φAQ113
-
Zago M, Scaltriti E, Rossetti L, Guffanti A, Armiento A, Fornasari ME, Grolli S, Carminati D, Brini E, Pavan P, Felsani A, D'Urzo A, Moles A, Claude JB, Grandori R, Ramoni R, Giraffa G. 2013. Characterization of the genome of the dairy Lactobacillus helveticus bacteriophage φAQ113. Appl Environ Microbiol 79:4712-4718. http://dx.doi.org/10.1128/AEM.00620-13.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 4712-4718
-
-
Zago, M.1
Scaltriti, E.2
Rossetti, L.3
Guffanti, A.4
Armiento, A.5
Fornasari, M.E.6
Grolli, S.7
Carminati, D.8
Brini, E.9
Pavan, P.10
Felsani, A.11
D'Urzo, A.12
Moles, A.13
Claude, J.B.14
Grandori, R.15
Ramoni, R.16
Giraffa, G.17
-
37
-
-
0027315289
-
Molecular comparison of the structural proteins encoding gene clusters of two related Lactobacillus delbrueckii bacteriophages
-
Vasala A, Dupont L, Baumann M, Ritzenthaler P, Alatossava T. 1993. Molecular comparison of the structural proteins encoding gene clusters of two related Lactobacillus delbrueckii bacteriophages. J Virol 67:3061-3068.
-
(1993)
J Virol
, vol.67
, pp. 3061-3068
-
-
Vasala, A.1
Dupont, L.2
Baumann, M.3
Ritzenthaler, P.4
Alatossava, T.5
-
38
-
-
0028558411
-
Characterization of the genome region encoding structural proteins of Lactobacillus delbrueckii subsp. lactis bacteriophage LL-H
-
Mikkonen M, Alatossava T. 1994. Characterization of the genome region encoding structural proteins of Lactobacillus delbrueckii subsp. lactis bacteriophage LL-H. Gene 151:53-59. http://dx.doi.org/10.1016/0378-1119(94)90632-7.
-
(1994)
Gene
, vol.151
, pp. 53-59
-
-
Mikkonen, M.1
Alatossava, T.2
-
39
-
-
0030579156
-
The early gene region completes the nucleotide sequence of Lactobacillus delbrueckii subsp. lactis phage LL-H
-
Mikkonen M, Raisanen L, Alatossava T. 1996. The early gene region completes the nucleotide sequence of Lactobacillus delbrueckii subsp. lactis phage LL-H. Gene 175:49-57. http://dx.doi.org/10.1016/0378-1119(96)00119-9.
-
(1996)
Gene
, vol.175
, pp. 49-57
-
-
Mikkonen, M.1
Raisanen, L.2
Alatossava, T.3
-
40
-
-
79959586910
-
The genomes and comparative genomics of Lactobacillus delbrueckii phages
-
Riipinen KA, Forsman P, Alatossava T. 2011. The genomes and comparative genomics of Lactobacillus delbrueckii phages. Arch Virol 156: 1217-1233. http://dx.doi.org/10.1007/s00705-011-0980-5.
-
(2011)
Arch Virol
, vol.156
, pp. 1217-1233
-
-
Riipinen, K.A.1
Forsman, P.2
Alatossava, T.3
-
41
-
-
84906342528
-
Molecular characterization of three Lactobacillus delbrueckii subsp. bulgaricus phages
-
Casey E, Mahony J, O'Connell-Motherway M, Bottacini F, Cornelissen A, Neve H, Heller KJ, Noben JP, Dal Bello F, van Sinderen D. 2014. Molecular characterization of three Lactobacillus delbrueckii subsp. bulgaricus phages Appl Environ Microbiol 80:5623-5635.
-
(2014)
Appl Environ Microbiol
, vol.80
, pp. 5623-5635
-
-
Casey, E.1
Mahony, J.2
O'Connell-Motherway, M.3
Bottacini, F.4
Cornelissen, A.5
Neve, H.6
Heller, K.J.7
Noben, J.P.8
Dal Bello, F.9
van Sinderen, D.10
-
42
-
-
84922023889
-
Genome and proteome analysis of bacteriophage Ldl1 reveals the existence of a novel phage group infecting Lactobacillus delbrueckii subsp. lactis
-
Casey E, Mahony J, Neve H, Noben JP, Bello FD, van Sinderen D. 2014. Genome and proteome analysis of bacteriophage Ldl1 reveals the existence of a novel phage group infecting Lactobacillus delbrueckii subsp. lactis. Appl Environ Microbiol 81:1319-1326. http://dx.doi.org/10.1128/AEM.01268-14.
-
(2014)
Appl Environ Microbiol
, vol.81
, pp. 1319-1326
-
-
Casey, E.1
Mahony, J.2
Neve, H.3
Noben, J.P.4
Bello, F.D.5
van Sinderen, D.6
-
43
-
-
84889052987
-
The genome of the Lactobacillus sanfranciscensis temperate phage EV3
-
Ehrmann MA, Angelov A, Picozzi C, Foschino R, Vogel RF. 2013. The genome of the Lactobacillus sanfranciscensis temperate phage EV3. BMC Res Notes 6:514. http://dx.doi.org/10.1186/1756-0500-6-514.
-
(2013)
BMC Res Notes
, vol.6
, pp. 514
-
-
Ehrmann, M.A.1
Angelov, A.2
Picozzi, C.3
Foschino, R.4
Vogel, R.F.5
-
44
-
-
80053180569
-
Complete genomic sequence of the Lactobacillus temperate phage LF1
-
Yoon BH, Chang HI. 2011. Complete genomic sequence of the Lactobacillus temperate phage LF1. Arch Virol 156:1909-1912. http://dx.doi.org/10.1007/s00705-011-1082-0.
-
(2011)
Arch Virol
, vol.156
, pp. 1909-1912
-
-
Yoon, B.H.1
Chang, H.I.2
-
45
-
-
78650036157
-
Genome analysis of Lactobacillus fermentum temperate bacteriophage φPYB5
-
Zhang X, Wang S, Guo T, Kong J. 2011. Genome analysis of Lactobacillus fermentum temperate bacteriophage φPYB5. Int J Food Microbiol 144: 400-405. http://dx.doi.org/10.1016/j.ijfoodmicro.2010.10.026.
-
(2011)
Int J Food Microbiol
, vol.144
, pp. 400-405
-
-
Zhang, X.1
Wang, S.2
Guo, T.3
Kong, J.4
-
46
-
-
79551562844
-
Complete nucleotide sequence of the temperate bacteriophage LBR48, a new member of the family Myoviridae
-
Jang SH, Yoon BH, Chang HI. 2011. Complete nucleotide sequence of the temperate bacteriophage LBR48, a new member of the family Myoviridae. Arch Virol 156:319-322. http://dx.doi.org/10.1007/s00705-010-0841-7.
-
(2011)
Arch Virol
, vol.156
, pp. 319-322
-
-
Jang, S.H.1
Yoon, B.H.2
Chang, H.I.3
-
47
-
-
79251573532
-
Induction, structural characterization, and genome sequence of Lv1, a prophage from a human vaginal Lactobacillus jensenii strain
-
Martin R, Escobedo S, Suarez JE. 2010. Induction, structural characterization, and genome sequence of Lv1, a prophage from a human vaginal Lactobacillus jensenii strain. Int Microbiol 13:113-121.
-
(2010)
Int Microbiol
, vol.13
, pp. 113-121
-
-
Martin, R.1
Escobedo, S.2
Suarez, J.E.3
-
48
-
-
63849139098
-
Bacteriophages of Lactobacillus
-
Villion M, Moineau S. 2009. Bacteriophages of Lactobacillus. Front Biosci 14:1661-1683.
-
(2009)
Front Biosci
, vol.14
, pp. 1661-1683
-
-
Villion, M.1
Moineau, S.2
-
49
-
-
85007958836
-
Studies on the lactic acid bacteria employed for beverage production II. Isolation and some properties of a bacteriophage infected during the fermentation of lactic acid beverage
-
Hino M, Ikebe N. 1965. Studies on the lactic acid bacteria employed for beverage production II. Isolation and some properties of a bacteriophage infected during the fermentation of lactic acid beverage. J Agric Chem Soc Jpn 39:472-476.
-
(1965)
J Agric Chem Soc Jpn
, vol.39
, pp. 472-476
-
-
Hino, M.1
Ikebe, N.2
-
50
-
-
0014845470
-
Bacteriophage active against the lactic acid beverage-producing bacterium Lactobacillus casei
-
Watanabe K, Takesue S, Jin-Nai K, Yoshikawa T. 1970. Bacteriophage active against the lactic acid beverage-producing bacterium Lactobacillus casei. Appl Microbiol 20:409-415.
-
(1970)
Appl Microbiol
, vol.20
, pp. 409-415
-
-
Watanabe, K.1
Takesue, S.2
Jin-Nai, K.3
Yoshikawa, T.4
-
51
-
-
77954354785
-
Characterisation of three temperate phages released from the same Lactobacillus paracasei commercial strain
-
Capra ML, Mercanti DJ, Reinheimer JA, Quiberoni AL. 2010. Characterisation of three temperate phages released from the same Lactobacillus paracasei commercial strain. Int J Dairy Technol 63:396-405. http://dx.doi.org/10.1111/j.1471-0307.2010.00600.x.
-
(2010)
Int J Dairy Technol
, vol.63
, pp. 396-405
-
-
Capra, M.L.1
Mercanti, D.J.2
Reinheimer, J.A.3
Quiberoni, A.L.4
-
52
-
-
84921368602
-
Characterization of two temperate Lactobacillus paracasei bacteriophages: morphology, kinetics, and adsorption
-
Mercanti DJ, Ackermann HW, Quiberoni A. 2015. Characterization of two temperate Lactobacillus paracasei bacteriophages: morphology, kinetics, and adsorption. Intervirology 58:49-56. http://dx.doi.org/10.1159/000369207.
-
(2015)
Intervirology
, vol.58
, pp. 49-56
-
-
Mercanti, D.J.1
Ackermann, H.W.2
Quiberoni, A.3
-
54
-
-
0030792558
-
An improved plaque assay for poor plaque-producing temperate lactococcal bacteriophages
-
Lillehaug D. 1997. An improved plaque assay for poor plaque-producing temperate lactococcal bacteriophages. J Appl Microbiol 83:85-90. http://dx.doi.org/10.1046/j.1365-2672.1997.00193.x.
-
(1997)
J Appl Microbiol
, vol.83
, pp. 85-90
-
-
Lillehaug, D.1
-
55
-
-
78349238864
-
Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies
-
Boisvert S, Laviolette F, Corbeil J. 2010. Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies. J Comput Biol 17:1519-1533. http://dx.doi.org/10.1089/cmb.2009.0238.
-
(2010)
J Comput Biol
, vol.17
, pp. 1519-1533
-
-
Boisvert, S.1
Laviolette, F.2
Corbeil, J.3
-
56
-
-
0030158571
-
The Staden sequence analysis package
-
Staden R. 1996. The Staden sequence analysis package. Mol Biotechnol 5:233-241. http://dx.doi.org/10.1007/BF02900361.
-
(1996)
Mol Biotechnol
, vol.5
, pp. 233-241
-
-
Staden, R.1
-
57
-
-
0002051540
-
BIOEDIT: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT
-
Hall TA. 1999. BIOEDIT: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98.
-
(1999)
Nucleic Acids Symp Ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
58
-
-
0032519353
-
GeneMark.hmm: new solutions for gene finding
-
Lukashin AV, Borodovsky M. 1998. GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res 26:1107-1115. http://dx.doi.org/10.1093/nar/26.4.1107.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
59
-
-
1242297827
-
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
-
Laslett D, Canback B. 2004. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res 32:11-16. http://dx.doi.org/10.1093/nar/gkh152.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 11-16
-
-
Laslett, D.1
Canback, B.2
-
60
-
-
74049108922
-
BLAST+: architecture and applications
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. 2009. BLAST+: architecture and applications. BMC Bioinformatics 10:1471-2105.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 1471-2105
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
61
-
-
77956519355
-
genoPlotR: comparative gene and genome visualization in R
-
Guy L, Roat Kultima J, Andersson SGE. 2010. genoPlotR: comparative gene and genome visualization in R. Bioinformatics 26:2334-2335. http://dx.doi.org/10.1093/bioinformatics/btq413.
-
(2010)
Bioinformatics
, vol.26
, pp. 2334-2335
-
-
Guy, L.1
Roat Kultima, J.2
Andersson, S.G.E.3
-
62
-
-
19944434101
-
The generalized transducing Salmonella bacteriophage ES18: complete genome sequence and DNA packaging strategy
-
Casjens SR, Gilcrease EB, Winn-Stapley DA, Schicklmaier P, Schmieger H, Pedulla ML, Ford ME, Houtz JM, Hatfull GF, Hendrix RW. 2005. The generalized transducing Salmonella bacteriophage ES18: complete genome sequence and DNA packaging strategy. J Bacteriol 187:1091-1104. http://dx.doi.org/10.1128/JB.187.3.1091-1104.2005.
-
(2005)
J Bacteriol
, vol.187
, pp. 1091-1104
-
-
Casjens, S.R.1
Gilcrease, E.B.2
Winn-Stapley, D.A.3
Schicklmaier, P.4
Schmieger, H.5
Pedulla, M.L.6
Ford, M.E.7
Houtz, J.M.8
Hatfull, G.F.9
Hendrix, R.W.10
-
63
-
-
79954529507
-
ProtTest 3: fast selection of best-fit models of protein evolution
-
Darriba D, Taboada GL, Doallo R, Posada D. 2011. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27:1164-1165. http://dx.doi.org/10.1093/bioinformatics/btr088.
-
(2011)
Bioinformatics
, vol.27
, pp. 1164-1165
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
64
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307-321. http://dx.doi.org/10.1093/sysbio/syq010.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
65
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira H. 2002. An approximately unbiased test of phylogenetic tree selection. Syst Biol 51:492-508. http://dx.doi.org/10.1080/10635150290069913.
-
(2002)
Syst Biol
, vol.51
, pp. 492-508
-
-
Shimodaira, H.1
-
66
-
-
77954209892
-
The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell
-
Junier T, Zdobnov EM. 2010. The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell. Bioinformatics 26:1669-1670. http://dx.doi.org/10.1093/bioinformatics/btq243.
-
(2010)
Bioinformatics
, vol.26
, pp. 1669-1670
-
-
Junier, T.1
Zdobnov, E.M.2
-
67
-
-
79960004119
-
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
-
Letunic I, Bork P. 2011. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 39:W475-W478. http://dx.doi.org/10.1093/nar/gkr201.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W475-W478
-
-
Letunic, I.1
Bork, P.2
-
68
-
-
84964313653
-
Automated classification of tailed bacteriophages according to their neck organization
-
Lopes A, Tavares P, Petit MA, Guerois R, Zinn-Justin S. 2014. Automated classification of tailed bacteriophages according to their neck organization. BMC Genomics 15:1027. http://dx.doi.org/10.1186/1471-2164-15-1027.
-
(2014)
BMC Genomics
, vol.15
, pp. 1027
-
-
Lopes, A.1
Tavares, P.2
Petit, M.A.3
Guerois, R.4
Zinn-Justin, S.5
-
69
-
-
77958537944
-
Characterization of Lactococcus lactis phage 949 and comparison with other lactococcal phages
-
Samson JE, Moineau S. 2010. Characterization of Lactococcus lactis phage 949 and comparison with other lactococcal phages. Appl Environ Microbiol 76:6843-6852. http://dx.doi.org/10.1128/AEM.00796-10.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 6843-6852
-
-
Samson, J.E.1
Moineau, S.2
-
70
-
-
80052248928
-
Bacteriophages of lactic acid bacteria and their impact on milk fermentations
-
Garneau J, Moineau S. 2011. Bacteriophages of lactic acid bacteria and their impact on milk fermentations. Microb Cell Fact 10:S20. http://dx.doi.org/10.1186/1475-2859-10-S1-S20.
-
(2011)
Microb Cell Fact
, vol.10
, pp. S20
-
-
Garneau, J.1
Moineau, S.2
-
71
-
-
33846932976
-
Abortive infection mechanisms and prophage sequences significantly influence the genetic makeup of emerging lytic lactococcal phages
-
Labrie S, Moineau S. 2007. Abortive infection mechanisms and prophage sequences significantly influence the genetic makeup of emerging lytic lactococcal phages. J Bacteriol 189:1482-1487. http://dx.doi.org/10.1128/JB.01111-06.
-
(2007)
J Bacteriol
, vol.189
, pp. 1482-1487
-
-
Labrie, S.1
Moineau, S.2
-
72
-
-
33745906984
-
Characterization of a new virulent phage (MLC-A) of Lactobacillus paracasei
-
Capra ML, Quiberoni A, Ackermann HW, Moineau S, Reinheimer JA. 2006. Characterization of a new virulent phage (MLC-A) of Lactobacillus paracasei. J Dairy Sci 89:2414-2423. http://dx.doi.org/10.3168/jds.S0022-0302(06)72314-1.
-
(2006)
J Dairy Sci
, vol.89
, pp. 2414-2423
-
-
Capra, M.L.1
Quiberoni, A.2
Ackermann, H.W.3
Moineau, S.4
Reinheimer, J.A.5
-
73
-
-
77951104433
-
Bacteriophage resistance mechanisms
-
Labrie S, Samson J, Moineau S. 2010. Bacteriophage resistance mechanisms. Nat Rev Microbiol 8:317-327. http://dx.doi.org/10.1038/nrmicro2315.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 317-327
-
-
Labrie, S.1
Samson, J.2
Moineau, S.3
|