Comparative genomics of the late gene cluster from Lactobacillus phages

Virology

Volumn 275, Issue 2, 2000, Pages 294-305

  Desiere, F ^a   Pridmore, R D ^a   Brussow, H ^a  

^a NESTLÉ RESEARCH CENTER   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; BACTERIOPHAGE DNA;

ARTICLE; BACILLUS SUBTILIS; BACTERIOPHAGE; CONTROLLED STUDY; DNA PACKAGING; GENE CLUSTER; GENE TRANSFER; GRAM NEGATIVE BACTERIUM; LACTOBACILLUS; LACTOBACILLUS DELBRUECKII; LACTOBACILLUS GASSERI; LACTOBACILLUS JOHNSONII; LACTOBACILLUS PLANTARUM; LACTOCOCCUS; LACTOCOCCUS LACTIS; LISTERIA MONOCYTOGENES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROPHAGE; PSEUDOMONAS; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; STREPTOCOCCUS; STREPTOCOCCUS THERMOPHILUS;

LACTOBACILLUS; LACTOCOCCUS; PSEUDOMONAS; STREPTOCOCCUS THERMOPHILUS;

EID: 0034734832     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.2000.0498     Document Type: Article

References (43)

1. Primary structure and features of the genome of the Lactobacillus gasseri temperate bacteriophage phi adh
2. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
3. Analysis of the open reading frames of the main capsid proteins of actinophage VWB
4. Evolution and horizontal transfer of dUTPase-encoding genes in viruses and their hosts
5. Head morphogenesis genes of the Bacillus subtilis bacteriophage SPP1
6. A theory of modular evolution for bacteriophages
7. Sequence analysis of the Lactococcus lactis temperate bacteriophage BK5-T and demonstration that the phage DNA has cohesive ends
8. Characterization of the lysogeny DNA module from the temperate Streptococcus thermophilus bacteriophage Sfi21
9. Molecular ecology and evolution of Streptococcus thermophilus bacteriophages - A review
10. Evolution of dsDNA tailed-bacteriophage genomes
11. Multiple sequence alignment with hierarchical clustering
12. DNA probe for Lactobacillus delbrueckii
13. Comparative sequence analysis of the DNA packaging, head and tail morphogenesis modules in the temperate cos-site Streptococcus thermophilus bacteriophage Sfi21
14. A highly conserved DNA replication module from Streptococcus thermophilus phages is similar in sequence and topology to a module from Lactococcus lactis phages
15. Evolution of Streptococcus thermophilus bacteriophage genomes by modular exchanges followed by point mutations and small deletions and insertions
16. Comparative analysis of cos-site siphoviridae from low gc content gram-positive bacteria: A genomics-based analysis of phage evolution
17. Phylogenetic classification and the universal tree
18. Bacteriophage HK97 head assembly
19. Cooperative interaction of Cl protein regulates lysogeny of Laotobacillus casei by bacteriophage A2
20. Cloning and analysis of the capsid morphogenesis genes of Pseudomonas aeruginosa bacteriophage D3: Another example of protein chain mail?
21. Evolutionary relationships among diverse bacteriophages and prophages: All the world's a phage
22. TMbase - A database of membrane spanning proteins segments
23. A space-efficient algorithm for local similarities
24. A genomic region of lactococcal temperate bacteriophage TP901-1 encoding major virion proteins
25. Genome structure of the Lactobacillus temperate phage phi g1e: The whole genome sequence and the putative promoter/repressor system
26. The phage-like element PBSX and part of the skin element, which are resident at different locations on the Bacillus subtilis chromosome, are highly homologous
27. Rapid and sensitive protein similarity searches
28. Complete nucleotide s, molecular analysis and genome structure of bacteriophage A118 of Listeria monocytogenes: Implications for phage evolution
29. The structural gene module in Streptococcus thermophilus bacteriophage phi Sfi11 shows a hierarchy of relatedness to Siphoviridae from a wide range of bacterial hosts
30. Comparative genomics of Streptococcus thermophilus phage species supports a modular evolution theory
31. Similarly organized lysogeny modules in temperate Siphoviridae from low GC content Gram-positive bacteria
32. The genetic relationship between virulent and temperate Streptococcus thermophilus bacteriophages: Whole genome comparison of cos-site phages Sfi19 and Sfi21
33. Characterization of the genome region encoding structural proteins of Lactobacillus delbrueckii subsp. lactis bacteriophage LL-H
34. Comparison of the lysogeny modules from the temperate Streptococcus thermophilus bacteriophages TP-J34 and Sfi21: Implications for the modular theory of phage evolution
35. Practical phage control
36. Nucleotide sequence and analysis of the new chromosomal abortive infection gene abiN of Lactococcus lactis subsp. cremoris S114
37. The complete genome sequence of the Streptomyces temperate phage phiC31: Evolutionary relationships to other viruses
38. Sequence analysis and characterization of phi O1205, a temperate bacteriophage infecting Streptococcus thermophilus CNRZ1205
39. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
40. Genetic and biochemical characterization of the Lactobacillus delbrueckii subsp. lactis bacteriophage LL-H lysin