Characterization of lactococcus lactis phage 949 and comparison with other lactococcal phages

Applied and Environmental Microbiology

Volumn 76, Issue 20, 2010, Pages 6843-6852

  Samson, Julie E ^a   Moineau, Sylvain ^a  

^a Groupe de Recherche en Ecologie Buccale   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CHEESE WHEY; CLASSIFICATION SCHEME; DEFENSE MECHANISM; DOUBLE-STRANDED DNA (DS-DNA); GC CONTENTS; LACTIS STRAIN; LACTOCOCCUS LACTIS; NEW ZEALAND; OPEN READING FRAME; PHAGE INFECTION; RECOMBINASES; SDS-PAGE; STRUCTURAL PROTEINS;

BACTERIOPHAGES; MASS SPECTROMETRY;

GENES;

DNA; VIRUS DNA; VIRUS PROTEIN;

BACTERIUM; CLASSIFICATION; DATABASE; HOST RANGE; INHIBITION; MILK; PROTEIN; VIRAL DISEASE; VIRULENCE;

ANIMAL; ARTICLE; BACTERIOPHAGE; CHEESE; CHEMISTRY; CLASSIFICATION; COMPARATIVE STUDY; DNA BASE COMPOSITION; DNA SEQUENCE; GENE ORDER; GENETICS; HOST RANGE; ISOLATION AND PURIFICATION; LACTOCOCCUS LACTIS; MASS SPECTROMETRY; MOLECULAR GENETICS; NEW ZEALAND; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; POLYACRYLAMIDE GEL ELECTROPHORESIS; TRANSMISSION ELECTRON MICROSCOPY; ULTRASTRUCTURE; VIRION; VIROLOGY;

ANIMALS; BACTERIOPHAGES; BASE COMPOSITION; CHEESE; DNA; DNA, VIRAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENE ORDER; HOST SPECIFICITY; LACTOCOCCUS LACTIS; MASS SPECTROMETRY; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; NEW ZEALAND; OPEN READING FRAMES; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SIPHOVIRIDAE; VIRAL PROTEINS; VIRION;

LACTOCOCCUS LACTIS; MIRIDAE; SIPHOVIRIDAE;

EID: 77958537944     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00796-10     Document Type: Article

References (50)

1. Ackermann, H. W. 1998. Tailed bacteriophages: the order Caudovirales. Adv. Virus Res. 51:135-201.
2. Ackermann, H. W., S. Yoshino, and S. Ogata. 1995. A Bacillus phage that is a living fossil. Can. J. Microbiol. 41:294-297.
3. Ahmed, R., P. Sankar-Mistry, S. Jackson, H. W. Ackermann, and S. S. Kasatiya. 1995. Bacillus cereus phage typing as an epidemiological tool in outbreaks of food poisoning. J. Clin. Microbiol. 33:636-640.
4. Bailly-Bechet, M., M. Vergassola, and E. Rocha. 2007. Causes for the intriguing presence of tRNAs in phages. Genome Res. 17:1486-1495.
5. Bissonnette, F., S. Labrie, H. Deveau, M. Lamoureux, and S. Moineau. 2000. Characterization of mesophilic mixed starter cultures used for the manufacture of aged cheddar cheese. J. Dairy Sci. 83:620-627.
6. Bolotin, A., P. Wincker, S. Mauger, O. Jaillon, K. Malarme, J. Weissenbach, S. D. Ehrlich, and A. Sorokin. 2001. The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403. Genome Res. 11:731-753.
7. Bouchard, J. D., E. Dion, F. Bissonnette, and S. Moineau. 2002. Characterization of the two-component abortive phage infection mechanism AbiT from Lactococcus lactis. J. Bacteriol. 184:6325-6332.
8. Chopin, A., H. Deveau, S. D. Ehrlich, S. Moineau, and M. C. Chopin. 2007. KSY1, a lactococcal phage with a T7-like transcription. Virology 365:1-9.
9. Crutz-Le Coq, A. M., B. Cesselin, J. Commissaire, and J. Anba. 2002. Sequence analysis of the lactococcal bacteriophage bIL170: insights into structural proteins and HNH endonucleases in dairy phages. Microbiology 148:985-1001.
10. Deveau, H., S. J. Labrie, M. C. Chopin, and S. Moineau. 2006. Biodiversity and classification of lactococcal phages. Appl. Environ. Microbiol. 72:4338-4346.
11. Deveau, H., M. R. Van Calsteren, and S. Moineau. 2002. Effect of exopolysaccharides on phage-host interactions in Lactococcus lactis. Appl. Environ. Microbiol. 68:4364-4369.
12. de Vos, W. M. 1987. Gene cloning and expression in lactic streptococci. FEMS Microbiol. Rev. 46:281-295.
13. Donelli, G., F. Guglielm, and L. Paoletti. 1972. Structure and physico-chemical properties of bacteriophage G. 1. Arrangement of protein subunits and contraction process of tail sheath. J. Mol. Biol. 71:113-125.
14. Dupuis, M. E., and S. Moineau. 2010. Genome organization and characterization of the virulent lactococcal phage 1358 and its similarities with Listeria phages. Appl. Environ. Microbiol. 76:1623-1632.
15. Emond, E., E. Dion, S. A. Walker, E. R. Vedamuthu, J. K. Kondo, and S. Moineau. 1998. AbiQ, an abortive infection mechanism from Lactococcus lactis. Appl. Environ. Microbiol. 64:4748-4756.
16. Emond, E., B. J. Holler, I. Boucher, P. A. Vandenbergh, E. R. Vedamuthu, J. K. Kondo, and S. Moineau. 1997. Phenotypic and genetic characterization of the bacteriophage abortive infection mechanism AbiK from Lactococcus lactis. Appl. Environ. Microbiol. 63:1274-1283.
17. Ferguson, P. L., and D. H. Coombs. 2000. Pulse-chase analysis of the in vivo assembly of the bacteriophage T4 tail. J. Mol. Biol. 297:99-117.
18. Filee, J., E. Bapteste, E. Susko, and H. M. Krisch. 2006. A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes. Mol. Biol. Evol. 23:1688-1696.
19. Fortier, L. C., A. Bransi, and S. Moineau. 2006. Genome sequence and global gene expression of Q54, a new phage species linking the 936 and c2 phage species of Lactococcus lactis. J. Bacteriol. 188:6101-6114.
20. Garneau, J. E., D. M. Tremblay, and S. Moineau. 2008. Characterization of 1 706, a virulent phage from Lactococcus lactis with similarities to prophages from other Firmicutes. Virology 373:298-309.
21. Haaber, J., S. Moineau, L. C. Fortier, and K. Hammer. 2008. AbiV, a novel antiphage abortive infection mechanism on the chromosome of Lactococcus lactis subsp. cremoris MG1363. Appl. Environ. Microbiol. 74:6528-6537.
22. Jarvis, A. W. 1977. The serological differentiation of lactic streptococcal bacteriophages. N. Z. J. Dairy Sci. Technol. 12:176-181.
23. Josephsen, J., N. Andersen, E. Behrndt, E. Brandsborg, G. Christiansen, M. B. Hansen, S. Hansen, E. W. Nielsen, and F. K. Vogensen. 1994. An ecological study of lytic bacteriophages of Lactococcus lactis subsp. cremoris isolated in a cheese plant over a five year period. Int. Dairy J. 4:123-140.
24. Kotsonis, S. E., I. B. Powell, C. J. Pillidge, G. K. Limsowtin, A. J. Hillier, and B. E. Davidson. 2008. Characterization and genomic analysis of phage asccphi28, a phage of the family Podoviridae infecting Lactococcus lactis. Appl. Environ. Microbiol. 74:3453-3460.
25. Kumar, S., M. Nei, J. Dudley, and K. Tamura. 2008. MEGA: a biologistcentric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 9:299-306.
26. Labrie, S. J., J. Josephsen, H. Neve, F. K. Vogensen, and S. Moineau. 2008. Morphology, genome sequence, and structural proteome of type phage P335 from Lactococcus lactis. Appl. Environ. Microbiol. 74:4636-4644.
27. Labrie, S. J., and S. Moineau. 2007. Abortive infection mechanisms and prophage sequences significantly influence the genetic makeup of emerging lytic lactococcal phages. J. Bacteriol. 189:1482-1487.
28. Labrie, S. J., J. E. Samson, and S. Moineau. 2010. Bacteriophage resistance mechanisms. Nat. Rev. Microbiol. 8:317-327.
29. Laslett, D., and B. Canback. 2004. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 32: 11-16.
30. Lillehaug, D. 1997. An improved plaque assay for poor plaque-producing temperate lactococcal bacteriophages. J. Appl. Microbiol. 83:85-90.
31. Lowe, T. M., and S. R. Eddy. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
32. Lukashin, A. V., and M. Borodovsky. 1998. GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 26:1107-1115.
33. Madera, C., C. Monjardin, and J. E. Suarez. 2004. Milk contamination and resistance to processing conditions determine the fate of Lactococcus lactis bacteriophages in dairies. Appl. Environ. Microbiol. 70:7365-7371.
34. McGrath, S., G. F. Fitzgerald, and D. van Sinderen. 2007. Bacteriophages in dairy products: pros and cons. Biotechnol. J. 2:450-455.
35. Moineau, S., and C. Lévesque. 2005. Control of bacteriophages in industrial fermentation, p. 286-296. In E. Kutter and A. Sulakvelidze (ed.), Bacteriophages: biology and applications. CRC Press, Boca Raton, FL.
36. Moineau, S., M. Borkaev, B. J. Holler, S. A. Walker, J. K. Kondo, E. R. Vedamuthu, and P. A. Vandenbergh. 1996. Isolation and characterization of lactococcal bacteriophages from cultured buttermilk plants in the United States. J. Dairy Sci. 79:2104-2111.
37. Moineau, S., E. Durmaz, S. Pandian, and T. R. Klaenhammer. 1993. Differentiation of two abortive mechanisms by using monoclonal antibodies directed toward lactococcal bacteriophage capsid proteins. Appl. Environ. Microbiol. 59:208-212.
38. Moineau, S., J. Fortier, H. W. Ackermann, and S. Pandian. 1992. Characterization of lactococcal bacteriophages from Quebec cheese plants. Can. J. Microbiol. 38:875-882.
39. Nes, I. F., J. Brendehaug, and K. O. von Husby. 1988. Characterization of the bacteriophage B2 of Lactobacillus plantarum ATCC 8014. Biochimie 70:423-427.
40. Petri, R., and C. Schmidt-Dannert. 2004. Dealing with complexity: evolutionary engineering and genome shuffling. Curr. Opin. Biotechnol. 15:298-304.
41. Rao, V. B., and M. Feiss. 2008. The bacteriophage DNA packaging motor. Annu. Rev. Genet. 42:647-681.
42. Rohwer, F., and R. Edwards. 2002. The phage proteomic tree: a genomebased taxonomy for phage. J. Bacteriol. 184:4529-4535.
43. Rousseau, G. M., and S. Moineau. 2009. Evolution of Lactococcus lactis phages within a cheese factory. Appl. Environ. Microbiol. 75:5336-5344.
44. Sambrook, J., and D. W. Russell. 2001. Molecular cloning, a laboratory manual, 3rd edition. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
45. Sjoberg, B. M., S. Hahne, C. Z. Mathews, C. K. Mathews, K. N. Rand, and M. J. Gait. 1986. The bacteriophage T4 gene for the small subunit of ribonucleotide reductase contains an intron. EMBO J. 5:2031-2036.
46. Spinelli, S., A. Desmyter, C. T. Verrips, H. J. de Haard, S. Moineau, and C. Cambillau. 2006. Lactococcal bacteriophage p2 receptor-binding protein structure suggests a common ancestor gene with bacterial and mammalian viruses. Nat. Struct. Mol. Biol. 13:85-89.
47. Tremblay, D. M., M. Tegoni, S. Spinelli, V. Campanacci, S. Blangy, C. Huyghe, A. Desmyter, S. Labrie, S. Moineau, and C. Cambillau. 2006. Receptor-binding protein of Lactococcus lactis phages: identification and characterization of the saccharide receptor-binding site. J. Bacteriol. 188: 2400-2410.
48. Villion, M., M. C. Chopin, H. Deveau, S. D. Ehrlich, S. Moineau, and A. Chopin. 2009. P087, a lactococcal phage with a morphogenesis module similar to an Enterococcus faecalis prophage. Virology 388:49-56.
49. Weisberg, R. A., M. E. Gottesmann, R. W. Hendrix, and J. W. Little. 1999. Family values in the age of genomics: comparative analyses of temperate bacteriophage HK022. Annu. Rev. Genet. 33:565-602.
50. Young, P., M. Ohman, M. Q. Xu, D. A. Shub, and B. M. Sjoberg. 1994. Intron-containing T4 bacteriophage gene sunY encodes an anaerobic ribonucleotide reductase. J. Biol. Chem. 269:20229-20232. (Pubitemid 24260415)