Complete genome sequences of Lactobacillus phages J-1 and PL-1

Genome Announcements

Volumn 2, Issue 1, 2014, Pages

  Dieterle, Maria Eugenia ^a,b   Jacobs Sera, Deborah ^b   Russell, Daniel ^b   Hatfull, Graham ^b   Piuri, Mariana ^a  

^a UNIVERSIDAD DE BUENOS AIRES   (Argentina)

^b UNIVERSITY OF PITTSBURGH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84998865500     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.e00998-13     Document Type: Article

References (18)

1. Hino M, Ikebe N. 1965. Studies on the lactic acid bacteria employed for beverage production. II. Isolation and some properties of a bacteriophage infected during the fermentation of lactic acid beverage. J. Agric. Chem. Soc. Jpn. 39:472-476.
2. Watanabe K, Takesue S, Jin-Nai K, Yoshikawa T. 1970. Bacteriophage active against the lactic acid beverage-producing bacterium Lactobacillus casei. Appl. Microbiol. 20:409-415.
3. Kakita Y, Kashige N, Murata K, Kuroiwa A, Funatsu M, Watanabe K. 1995 Inactivation of Lactobacillus bacteriophage PL-1 by microwave irradiation. Microbiol. Immunol. 39:571-576. http://dx.doi.org/10.1111/j.13 48-0421.1995.tb02244.x.
4. Kashige N, Kakita Y, Nakashima Y, Miake F, Watanabe K. 2001. Mechanism of the photocatalytic inactivation of Lactobacillus casei phage PL-1 by Titania thin film. Curr. Microbiol. 42:184-189. http://dx.doi.org/10.1007/s002840010201.
5. Kashige N, Nakashima Y, Miake F, Watanabe K. 2000. Cloning, sequence analysis, and expression of Lactobacillus casei phage PL-1 lysis genes. Arch. Virol. 145:1521-1534. http://dx.doi.org/10.1007/s00705007 0073.
6. Capra ML, Quiberoni A, Reinheimer J. 2006. Phages of Lactobacillus casei/paracasei: response to environmental factors and interaction with collection and commercial strains. J. Appl. Microbiol. 100:334-342. http://dx.doi.org/10.1111/j.1365-2672.2005.02767.x.
7. Nakashima Y, Ikeda H, Kakita Y, Miake F, Watanabe K. 1994. Restriction map of the genomic DNA of Lactobacillus casei bacteriophage PL-1 and nucleotide sequence of its cohesive single-stranded ends. J. Gen. Virol. 75(Pt 9):2537-2541. http://dx.doi.org/10.1099/0022-1317-75-9-2537.
8. Sechaud L, Cluzel PJ, Rousseau M, Baumgartner A, Accolas JP. 1988. Bacteriophages of Lactobacilli. Biochimie 70:401-410. http://dx.doi.org/10.1016/0300-9084(88)90214-3.
9. Watanabe K, Kakita Y, Nakashima Y, Sasaki T. 1990. Protoplast transfection of Lactobacillus casei by phage PL-1 DNA. Agric. Biol. Chem. 54: 937-941. http://dx.doi.org/10.1271/bbb1961.54.937.
10. Watanabe K, Ishibashi K, Nakashima Y, Sakurai T. 1984. A phageresistant mutant of Lactobacillus casei which permits phage adsorption but not genome injection. J. Gen. Virol. 65:981-986. http://dx.doi.org/10.109 9/0022-1317-65-5-981.
11. Stein LD, Mungall C, Shu S, Caudy M, Mangone M, Day A, Nickerson E, Stajich JE, Harris TW, Arva A, Lewis S. 2002. The generic genome browser: a building block for a model organism system database. Genome Res. 12:1599-1610. http://dx.doi.org/10.1101/gr.403602.
12. Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. 1999. Improved microbial gene identification with Glimmer. Nucleic Acids Res. 27: 4636-4641. http://dx.doi.org/10.1093/nar/27.23.4636.
13. Borodovsky M, McIninch J. 1993. Recognition of genes in DNA sequence with ambiguities. Biosystems 30:161-171. http://dx.doi.org/10.1016/0303-2647(93)90068-N.
14. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964. http://dx.doi.org/10.1093/nar/25.5.0955.
15. Laslett D, Canback B. 2004. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 32:11-16. http://dx.doi.org/10.1093/nar/gkh152.
16. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic Local Alignment Search Tool. J. Mol. Biol. 215:403-410. http://dx.doi.org/10.1016/S0022-2836(05)80360-2.
17. Marchler-Bauer A, Bryant SH. 2004. CD-Search: protein domain annotations on the fly. Nucleic Acids Res. 32(Web Server issue):W327-W331. http://dx.doi.org/10.1093/nar/gkh454.
18. Söding J, Biegert A, Lupas AN. 2005. The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 33:W244-W248. http://dx.doi.org/10.1093/nar/gki408.