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Volumn 1859, Issue 1, 2016, Pages 128-138

Long noncoding RNAs: Re-writing dogmas of RNA processing and stability

Author keywords

CircRNA; Circular RNA; MALAT1; MEN ; NEAT1; Polyadenylation; Pre mRNA splicing; RNA stability; Sno lncRNA; Triple helix; tRNA like

Indexed keywords

EXONUCLEASE; LONG UNTRANSLATED RNA; MALAT1 PROTEIN; NEAT1 PROTEIN; NEAT2 PROTEIN; POLYADENYLIC ACID; SMALL NUCLEOLAR RNA; TRANSFER RNA; UNCLASSIFIED DRUG; RNA PRECURSOR;

EID: 84953362955     PISSN: 18749399     EISSN: 18764320     Source Type: Journal    
DOI: 10.1016/j.bbagrm.2015.06.003     Document Type: Review
Times cited : (184)

References (160)
  • 1
    • 34249088350 scopus 로고    scopus 로고
    • Genome-wide transcription and the implications for genomic organization
    • Kapranov P., Willingham A.T., Gingeras T.R. Genome-wide transcription and the implications for genomic organization. Nat. Rev. Genet. 2007, 8:413-423.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 413-423
    • Kapranov, P.1    Willingham, A.T.2    Gingeras, T.R.3
  • 8
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • Bartel D.P. MicroRNAs: target recognition and regulatory functions. Cell 2009, 136:215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 10
    • 61849113891 scopus 로고    scopus 로고
    • MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
    • Sunwoo H., Dinger M.E., Wilusz J.E., Amaral P.P., Mattick J.S., Spector D.L. MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. Genome Res. 2009, 19:347-359.
    • (2009) Genome Res. , vol.19 , pp. 347-359
    • Sunwoo, H.1    Dinger, M.E.2    Wilusz, J.E.3    Amaral, P.P.4    Mattick, J.S.5    Spector, D.L.6
  • 12
    • 84863045982 scopus 로고    scopus 로고
    • Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types
    • Salzman J., Gawad C., Wang P.L., Lacayo N., Brown P.O. Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types. PLoS One 2012, 7:e30733.
    • (2012) PLoS One , vol.7 , pp. e30733
    • Salzman, J.1    Gawad, C.2    Wang, P.L.3    Lacayo, N.4    Brown, P.O.5
  • 13
    • 84857074361 scopus 로고    scopus 로고
    • Molecular biology: RNA discrimination
    • Kowalczyk M.S., Higgs D.R., Gingeras T.R. Molecular biology: RNA discrimination. Nature 2012, 482:310-311.
    • (2012) Nature , vol.482 , pp. 310-311
    • Kowalczyk, M.S.1    Higgs, D.R.2    Gingeras, T.R.3
  • 14
    • 84879987789 scopus 로고    scopus 로고
    • LincRNAs: genomics, evolution, and mechanisms
    • Ulitsky I., Bartel D.P. lincRNAs: genomics, evolution, and mechanisms. Cell 2013, 154:26-46.
    • (2013) Cell , vol.154 , pp. 26-46
    • Ulitsky, I.1    Bartel, D.P.2
  • 15
    • 67649671961 scopus 로고    scopus 로고
    • Long noncoding RNAs: functional surprises from the RNA world
    • Wilusz J.E., Sunwoo H., Spector D.L. Long noncoding RNAs: functional surprises from the RNA world. Genes Dev. 2009, 23:1494-1504.
    • (2009) Genes Dev. , vol.23 , pp. 1494-1504
    • Wilusz, J.E.1    Sunwoo, H.2    Spector, D.L.3
  • 16
    • 84897128298 scopus 로고    scopus 로고
    • The noncoding RNA revolution-trashing old rules to forge new ones
    • Cech T.R., Steitz J.A. The noncoding RNA revolution-trashing old rules to forge new ones. Cell 2014, 157:77-94.
    • (2014) Cell , vol.157 , pp. 77-94
    • Cech, T.R.1    Steitz, J.A.2
  • 17
    • 84890860436 scopus 로고    scopus 로고
    • Long noncoding RNAs: fresh perspectives into the RNA world
    • Yang L., Froberg J.E., Lee J.T. Long noncoding RNAs: fresh perspectives into the RNA world. Trends Biochem. Sci. 2014, 39:35-43.
    • (2014) Trends Biochem. Sci. , vol.39 , pp. 35-43
    • Yang, L.1    Froberg, J.E.2    Lee, J.T.3
  • 18
    • 84884582059 scopus 로고    scopus 로고
    • Long non-coding RNAs: modulators of nuclear structure and function
    • Bergmann J.H., Spector D.L. Long non-coding RNAs: modulators of nuclear structure and function. Curr. Opin. Cell Biol. 2014, 26:10-18.
    • (2014) Curr. Opin. Cell Biol. , vol.26 , pp. 10-18
    • Bergmann, J.H.1    Spector, D.L.2
  • 19
    • 84861904178 scopus 로고    scopus 로고
    • Genome regulation by long noncoding RNAs
    • Rinn J.L., Chang H.Y. Genome regulation by long noncoding RNAs. Annu. Rev. Biochem. 2012, 81:145-166.
    • (2012) Annu. Rev. Biochem. , vol.81 , pp. 145-166
    • Rinn, J.L.1    Chang, H.Y.2
  • 20
    • 84875183056 scopus 로고    scopus 로고
    • Structure and function of long noncoding RNAs in epigenetic regulation
    • Mercer T.R., Mattick J.S. Structure and function of long noncoding RNAs in epigenetic regulation. Nat. Struct. Mol. Biol. 2013, 20:300-307.
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 300-307
    • Mercer, T.R.1    Mattick, J.S.2
  • 23
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili M.N., Trapnell C., Goff L., Koziol M., Tazon-Vega B., Regev A., Rinn J.L. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 2011, 25:1915-1927.
    • (2011) Genes Dev. , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 24
    • 79957840356 scopus 로고    scopus 로고
    • Long noncoding RNAs and human disease
    • Wapinski O., Chang H.Y. Long noncoding RNAs and human disease. Trends Cell Biol. 2011, 21:354-361.
    • (2011) Trends Cell Biol. , vol.21 , pp. 354-361
    • Wapinski, O.1    Chang, H.Y.2
  • 25
    • 84885682654 scopus 로고    scopus 로고
    • Long non-coding RNAs: novel targets for nervous system disease diagnosis and therapy
    • Qureshi I.A., Mehler M.F. Long non-coding RNAs: novel targets for nervous system disease diagnosis and therapy. Neurotherapeutics 2013, 10:632-646.
    • (2013) Neurotherapeutics , vol.10 , pp. 632-646
    • Qureshi, I.A.1    Mehler, M.F.2
  • 26
    • 84879837310 scopus 로고    scopus 로고
    • MALAT1 - a paradigm for long noncoding RNA function in cancer
    • Gutschner T., Hammerle M., Diederichs S. MALAT1 - a paradigm for long noncoding RNA function in cancer. J. Mol. Med. 2013, 91:791-801.
    • (2013) J. Mol. Med. , vol.91 , pp. 791-801
    • Gutschner, T.1    Hammerle, M.2    Diederichs, S.3
  • 27
    • 34248162440 scopus 로고    scopus 로고
    • Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
    • Ponjavic J., Ponting C.P., Lunter G. Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs. Genome Res. 2007, 17:556-565.
    • (2007) Genome Res. , vol.17 , pp. 556-565
    • Ponjavic, J.1    Ponting, C.P.2    Lunter, G.3
  • 29
    • 84455206362 scopus 로고    scopus 로고
    • Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
    • Ulitsky I., Shkumatava A., Jan C.H., Sive H., Bartel D.P. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. Cell 2011, 147:1537-1550.
    • (2011) Cell , vol.147 , pp. 1537-1550
    • Ulitsky, I.1    Shkumatava, A.2    Jan, C.H.3    Sive, H.4    Bartel, D.P.5
  • 30
    • 55349109963 scopus 로고    scopus 로고
    • Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
    • Zhao J., Sun B.K., Erwin J.A., Song J.J., Lee J.T. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 2008, 322:750-756.
    • (2008) Science , vol.322 , pp. 750-756
    • Zhao, J.1    Sun, B.K.2    Erwin, J.A.3    Song, J.J.4    Lee, J.T.5
  • 33
    • 84880421665 scopus 로고    scopus 로고
    • ATP-dependent roX RNA remodeling by the helicase maleless enables specific association of MSL proteins
    • Maenner S., Muller M., Frohlich J., Langer D., Becker P.B. ATP-dependent roX RNA remodeling by the helicase maleless enables specific association of MSL proteins. Mol. Cell 2013, 51:174-184.
    • (2013) Mol. Cell , vol.51 , pp. 174-184
    • Maenner, S.1    Muller, M.2    Frohlich, J.3    Langer, D.4    Becker, P.B.5
  • 34
    • 33846930357 scopus 로고    scopus 로고
    • Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
    • Martianov I., Ramadass A., Serra Barros A., Chow N., Akoulitchev A. Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript. Nature 2007, 445:666-670.
    • (2007) Nature , vol.445 , pp. 666-670
    • Martianov, I.1    Ramadass, A.2    Serra Barros, A.3    Chow, N.4    Akoulitchev, A.5
  • 38
    • 79951495822 scopus 로고    scopus 로고
    • LncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements
    • Gong C., Maquat L.E. lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements. Nature 2011, 470:284-288.
    • (2011) Nature , vol.470 , pp. 284-288
    • Gong, C.1    Maquat, L.E.2
  • 39
    • 41149112564 scopus 로고    scopus 로고
    • A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition
    • Beltran M., Puig I., Pena C., Garcia J.M., Alvarez A.B., Pena R., Bonilla F., de Herreros A.G. A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition. Genes Dev. 2008, 22:756-769.
    • (2008) Genes Dev. , vol.22 , pp. 756-769
    • Beltran, M.1    Puig, I.2    Pena, C.3    Garcia, J.M.4    Alvarez, A.B.5    Pena, R.6    Bonilla, F.7    de Herreros, A.G.8
  • 40
    • 84922755348 scopus 로고    scopus 로고
    • EBV noncoding RNA binds nascent RNA to drive host PAX5 to viral DNA
    • Lee N., Moss W.N., Yario T.A., Steitz J.A. EBV noncoding RNA binds nascent RNA to drive host PAX5 to viral DNA. Cell 2015, 160:607-618.
    • (2015) Cell , vol.160 , pp. 607-618
    • Lee, N.1    Moss, W.N.2    Yario, T.A.3    Steitz, J.A.4
  • 42
    • 84925283052 scopus 로고    scopus 로고
    • Technologies to probe functions and mechanisms of long noncoding RNAs
    • Chu C., Spitale R.C., Chang H.Y. Technologies to probe functions and mechanisms of long noncoding RNAs. Nat. Struct. Mol. Biol. 2015, 22:29-35.
    • (2015) Nat. Struct. Mol. Biol. , vol.22 , pp. 29-35
    • Chu, C.1    Spitale, R.C.2    Chang, H.Y.3
  • 43
    • 84862195751 scopus 로고    scopus 로고
    • Structural architecture of the human long non-coding RNA, steroid receptor RNA activator
    • Novikova I.V., Hennelly S.P., Sanbonmatsu K.Y. Structural architecture of the human long non-coding RNA, steroid receptor RNA activator. Nucleic Acids Res. 2012, 40:5034-5051.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 5034-5051
    • Novikova, I.V.1    Hennelly, S.P.2    Sanbonmatsu, K.Y.3
  • 44
    • 84893351549 scopus 로고    scopus 로고
    • Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
    • Rouskin S., Zubradt M., Washietl S., Kellis M., Weissman J.S. Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo. Nature 2014, 505:701-705.
    • (2014) Nature , vol.505 , pp. 701-705
    • Rouskin, S.1    Zubradt, M.2    Washietl, S.3    Kellis, M.4    Weissman, J.S.5
  • 45
    • 75149119376 scopus 로고    scopus 로고
    • An unexpected ending: noncanonical 3' end processing mechanisms
    • Wilusz J.E., Spector D.L. An unexpected ending: noncanonical 3' end processing mechanisms. RNA 2010, 16:259-266.
    • (2010) RNA , vol.16 , pp. 259-266
    • Wilusz, J.E.1    Spector, D.L.2
  • 46
    • 84921391750 scopus 로고    scopus 로고
    • Life without A tail: new formats of long noncoding RNAs
    • Zhang Y., Yang L., Chen L.L. Life without A tail: new formats of long noncoding RNAs. Int. J. Biochem. Cell Biol. 2014, 54:338-349.
    • (2014) Int. J. Biochem. Cell Biol. , vol.54 , pp. 338-349
    • Zhang, Y.1    Yang, L.2    Chen, L.L.3
  • 49
    • 84858442444 scopus 로고    scopus 로고
    • Mechanisms of deadenylation-dependent decay
    • Chen C.Y., Shyu A.B. Mechanisms of deadenylation-dependent decay. Wiley Interdiscip. Rev. RNA 2011, 2:167-183.
    • (2011) Wiley Interdiscip. Rev. RNA , vol.2 , pp. 167-183
    • Chen, C.Y.1    Shyu, A.B.2
  • 55
    • 33847185603 scopus 로고    scopus 로고
    • A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains
    • Hutchinson J.N., Ensminger A.W., Clemson C.M., Lynch C.R., Lawrence J.B., Chess A. A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains. BMC Genomics 2007, 8:39.
    • (2007) BMC Genomics , vol.8 , pp. 39
    • Hutchinson, J.N.1    Ensminger, A.W.2    Clemson, C.M.3    Lynch, C.R.4    Lawrence, J.B.5    Chess, A.6
  • 58
    • 33846950027 scopus 로고    scopus 로고
    • A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas
    • Lin R., Maeda S., Liu C., Karin M., Edgington T.S. A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas. Oncogene 2007, 26:851-858.
    • (2007) Oncogene , vol.26 , pp. 851-858
    • Lin, R.1    Maeda, S.2    Liu, C.3    Karin, M.4    Edgington, T.S.5
  • 60
    • 84872825450 scopus 로고    scopus 로고
    • Long non-coding RNA MALAT-1 overexpression predicts tumor recurrence of hepatocellular carcinoma after liver transplantation
    • Lai M.C., Yang Z., Zhou L., Zhu Q.Q., Xie H.Y., Zhang F., Wu L.M., Chen L.M., Zheng S.S. Long non-coding RNA MALAT-1 overexpression predicts tumor recurrence of hepatocellular carcinoma after liver transplantation. Med. Oncol. 2011, 29:1810-1816.
    • (2011) Med. Oncol. , vol.29 , pp. 1810-1816
    • Lai, M.C.1    Yang, Z.2    Zhou, L.3    Zhu, Q.Q.4    Xie, H.Y.5    Zhang, F.6    Wu, L.M.7    Chen, L.M.8    Zheng, S.S.9
  • 63
    • 77249162660 scopus 로고    scopus 로고
    • Inhibition of metastasis-associated lung adenocarcinoma transcript 1 in CaSki human cervical cancer cells suppresses cell proliferation and invasion
    • Guo F., Li Y., Liu Y., Wang J., Li G. Inhibition of metastasis-associated lung adenocarcinoma transcript 1 in CaSki human cervical cancer cells suppresses cell proliferation and invasion. Acta Biochim. Biophys. Sin. (Shanghai) 2010, 42:224-229.
    • (2010) Acta Biochim. Biophys. Sin. (Shanghai) , vol.42 , pp. 224-229
    • Guo, F.1    Li, Y.2    Liu, Y.3    Wang, J.4    Li, G.5
  • 64
    • 79955996135 scopus 로고    scopus 로고
    • MALAT-1: a long non-coding RNA and its important 3' end functional motif in colorectal cancer metastasis
    • Xu C., Yang M., Tian J., Wang X., Li Z. MALAT-1: a long non-coding RNA and its important 3' end functional motif in colorectal cancer metastasis. Int. J. Oncol. 2011, 39:169-175.
    • (2011) Int. J. Oncol. , vol.39 , pp. 169-175
    • Xu, C.1    Yang, M.2    Tian, J.3    Wang, X.4    Li, Z.5
  • 66
    • 81055140863 scopus 로고    scopus 로고
    • NcRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs
    • Yang L., Lin C., Liu W., Zhang J., Ohgi K.A., Grinstein J.D., Dorrestein P.C., Rosenfeld M.G. ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs. Cell 2011, 147:773-788.
    • (2011) Cell , vol.147 , pp. 773-788
    • Yang, L.1    Lin, C.2    Liu, W.3    Zhang, J.4    Ohgi, K.A.5    Grinstein, J.D.6    Dorrestein, P.C.7    Rosenfeld, M.G.8
  • 68
    • 78249258719 scopus 로고    scopus 로고
    • MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motility-related genes
    • Tano K., Mizuno R., Okada T., Rakwal R., Shibato J., Masuo Y., Ijiri K., Akimitsu N. MALAT-1 enhances cell motility of lung adenocarcinoma cells by influencing the expression of motility-related genes. FEBS Lett. 2010, 584:4575-4580.
    • (2010) FEBS Lett. , vol.584 , pp. 4575-4580
    • Tano, K.1    Mizuno, R.2    Okada, T.3    Rakwal, R.4    Shibato, J.5    Masuo, Y.6    Ijiri, K.7    Akimitsu, N.8
  • 69
    • 74049089365 scopus 로고    scopus 로고
    • Metastasis associated lung adenocarcinoma transcript 1 is up-regulated in placenta previa increta/percreta and strongly associated with trophoblast-like cell invasion in vitro
    • Tseng J.J., Hsieh Y.T., Hsu S.L., Chou M.M. Metastasis associated lung adenocarcinoma transcript 1 is up-regulated in placenta previa increta/percreta and strongly associated with trophoblast-like cell invasion in vitro. Mol. Hum. Reprod. 2009, 15:725-731.
    • (2009) Mol. Hum. Reprod. , vol.15 , pp. 725-731
    • Tseng, J.J.1    Hsieh, Y.T.2    Hsu, S.L.3    Chou, M.M.4
  • 70
    • 80555157531 scopus 로고    scopus 로고
    • Noncoding RNA gene silencing through genomic integration of RNA destabilizing elements using zinc finger nucleases
    • Gutschner T., Baas M., Diederichs S. Noncoding RNA gene silencing through genomic integration of RNA destabilizing elements using zinc finger nucleases. Genome Res. 2011, 21:1944-1954.
    • (2011) Genome Res. , vol.21 , pp. 1944-1954
    • Gutschner, T.1    Baas, M.2    Diederichs, S.3
  • 76
    • 33947425161 scopus 로고    scopus 로고
    • DNA sequence of the translocation breakpoints in undifferentiated embryonal sarcoma arising in mesenchymal hamartoma of the liver harboring the t(11;19)(q11;q13.4) translocation
    • Rajaram V., Knezevich S., Bove K.E., Perry A., Pfeifer J.D. DNA sequence of the translocation breakpoints in undifferentiated embryonal sarcoma arising in mesenchymal hamartoma of the liver harboring the t(11;19)(q11;q13.4) translocation. Genes Chromosome. Cancer 2007, 46:508-513.
    • (2007) Genes Chromosome. Cancer , vol.46 , pp. 508-513
    • Rajaram, V.1    Knezevich, S.2    Bove, K.E.3    Perry, A.4    Pfeifer, J.D.5
  • 77
    • 84866615517 scopus 로고    scopus 로고
    • Molecular confirmation of t(6;11)(p21;q12) renal cell carcinoma in archival paraffin-embedded material using a break-apart TFEB FISH assay expands its clinicopathologic spectrum
    • Argani P., Yonescu R., Morsberger L., Morris K., Netto G.J., Smith N., Gonzalez N., Illei P.B., Ladanyi M., Griffin C.A. Molecular confirmation of t(6;11)(p21;q12) renal cell carcinoma in archival paraffin-embedded material using a break-apart TFEB FISH assay expands its clinicopathologic spectrum. Am. J. Surg. Pathol. 2012, 36:1516-1526.
    • (2012) Am. J. Surg. Pathol. , vol.36 , pp. 1516-1526
    • Argani, P.1    Yonescu, R.2    Morsberger, L.3    Morris, K.4    Netto, G.J.5    Smith, N.6    Gonzalez, N.7    Illei, P.B.8    Ladanyi, M.9    Griffin, C.A.10
  • 79
    • 56349113455 scopus 로고    scopus 로고
    • 3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA
    • Wilusz J.E., Freier S.M., Spector D.L. 3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA. Cell 2008, 135:919-932.
    • (2008) Cell , vol.135 , pp. 919-932
    • Wilusz, J.E.1    Freier, S.M.2    Spector, D.L.3
  • 80
    • 54149091257 scopus 로고    scopus 로고
    • Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail
    • Marzluff W.F., Wagner E.J., Duronio R.J. Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail. Nat. Rev. Genet. 2008, 9:843-854.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 843-854
    • Marzluff, W.F.1    Wagner, E.J.2    Duronio, R.J.3
  • 81
    • 0023405161 scopus 로고
    • A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability
    • Sachs A.B., Davis R.W., Kornberg R.D. A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability. Mol. Cell. Biol. 1987, 7:3268-3276.
    • (1987) Mol. Cell. Biol. , vol.7 , pp. 3268-3276
    • Sachs, A.B.1    Davis, R.W.2    Kornberg, R.D.3
  • 82
    • 84868519473 scopus 로고    scopus 로고
    • A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails
    • Wilusz J.E., JnBaptiste C.K., Lu L.Y., Kuhn C.D., Joshua-Tor L., Sharp P.A. A triple helix stabilizes the 3' ends of long noncoding RNAs that lack poly(A) tails. Genes Dev. 2012, 26:2392-2407.
    • (2012) Genes Dev. , vol.26 , pp. 2392-2407
    • Wilusz, J.E.1    JnBaptiste, C.K.2    Lu, L.Y.3    Kuhn, C.D.4    Joshua-Tor, L.5    Sharp, P.A.6
  • 86
    • 78649422018 scopus 로고    scopus 로고
    • Poly(A) tail recognition by a viral RNA element through assembly of a triple helix
    • Mitton-Fry R.M., DeGregorio S.J., Wang J., Steitz T.A., Steitz J.A. Poly(A) tail recognition by a viral RNA element through assembly of a triple helix. Science 2010, 330:1244-1247.
    • (2010) Science , vol.330 , pp. 1244-1247
    • Mitton-Fry, R.M.1    DeGregorio, S.J.2    Wang, J.3    Steitz, T.A.4    Steitz, J.A.5
  • 87
    • 84864295521 scopus 로고    scopus 로고
    • Conservation of a triple-helix-forming RNA stability element in noncoding and genomic RNAs of diverse viruses
    • Tycowski K.T., Shu M.D., Borah S., Shi M., Steitz J.A. Conservation of a triple-helix-forming RNA stability element in noncoding and genomic RNAs of diverse viruses. Cell Rep. 2012, 2:26-32.
    • (2012) Cell Rep. , vol.2 , pp. 26-32
    • Tycowski, K.T.1    Shu, M.D.2    Borah, S.3    Shi, M.4    Steitz, J.A.5
  • 88
    • 34547510230 scopus 로고    scopus 로고
    • Mutational analysis of a viral RNA element that counteracts rapid RNA decay by interaction with the polyadenylate tail
    • Conrad N.K., Shu M.D., Uyhazi K.E., Steitz J.A. Mutational analysis of a viral RNA element that counteracts rapid RNA decay by interaction with the polyadenylate tail. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:10412-10417.
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 10412-10417
    • Conrad, N.K.1    Shu, M.D.2    Uyhazi, K.E.3    Steitz, J.A.4
  • 89
    • 84894131718 scopus 로고    scopus 로고
    • Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast
    • Geisberg J.V., Moqtaderi Z., Fan X., Ozsolak F., Struhl K. Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast. Cell 2014, 156:812-824.
    • (2014) Cell , vol.156 , pp. 812-824
    • Geisberg, J.V.1    Moqtaderi, Z.2    Fan, X.3    Ozsolak, F.4    Struhl, K.5
  • 90
    • 84898869373 scopus 로고    scopus 로고
    • Structural basis for the Nanos-mediated recruitment of the CCR4-NOT complex and translational repression
    • Bhandari D., Raisch T., Weichenrieder O., Jonas S., Izaurralde E. Structural basis for the Nanos-mediated recruitment of the CCR4-NOT complex and translational repression. Genes Dev. 2014, 28:888-901.
    • (2014) Genes Dev. , vol.28 , pp. 888-901
    • Bhandari, D.1    Raisch, T.2    Weichenrieder, O.3    Jonas, S.4    Izaurralde, E.5
  • 91
    • 0035787721 scopus 로고    scopus 로고
    • The mRNA closed-loop model: the function of PABP and PABP-interacting proteins in mRNA translation
    • Kahvejian A., Roy G., Sonenberg N. The mRNA closed-loop model: the function of PABP and PABP-interacting proteins in mRNA translation. Cold Spring Harb. Symp. Quant. Biol. 2001, 66:293-300.
    • (2001) Cold Spring Harb. Symp. Quant. Biol. , vol.66 , pp. 293-300
    • Kahvejian, A.1    Roy, G.2    Sonenberg, N.3
  • 92
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
    • Ingolia N.T., Lareau L.F., Weissman J.S. Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell 2011, 147:789-802.
    • (2011) Cell , vol.147 , pp. 789-802
    • Ingolia, N.T.1    Lareau, L.F.2    Weissman, J.S.3
  • 98
    • 62549117314 scopus 로고    scopus 로고
    • An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles
    • Clemson C.M., Hutchinson J.N., Sara S.A., Ensminger A.W., Fox A.H., Chess A., Lawrence J.B. An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles. Mol. Cell 2009, 33:717-726.
    • (2009) Mol. Cell , vol.33 , pp. 717-726
    • Clemson, C.M.1    Hutchinson, J.N.2    Sara, S.A.3    Ensminger, A.W.4    Fox, A.H.5    Chess, A.6    Lawrence, J.B.7
  • 104
    • 77953890823 scopus 로고    scopus 로고
    • TDP-43 and FUS/TLS: emerging roles in RNA processing and neurodegeneration
    • Lagier-Tourenne C., Polymenidou M., Cleveland D.W. TDP-43 and FUS/TLS: emerging roles in RNA processing and neurodegeneration. Hum. Mol. Genet. 2010, 19:R46-R64.
    • (2010) Hum. Mol. Genet. , vol.19 , pp. R46-R64
    • Lagier-Tourenne, C.1    Polymenidou, M.2    Cleveland, D.W.3
  • 106
    • 84867575580 scopus 로고    scopus 로고
    • Alternative 3'-end processing of long noncoding RNA initiates construction of nuclear paraspeckles
    • Naganuma T., Nakagawa S., Tanigawa A., Sasaki Y.F., Goshima N., Hirose T. Alternative 3'-end processing of long noncoding RNA initiates construction of nuclear paraspeckles. EMBO J. 2012, 31:4020-4034.
    • (2012) EMBO J. , vol.31 , pp. 4020-4034
    • Naganuma, T.1    Nakagawa, S.2    Tanigawa, A.3    Sasaki, Y.F.4    Goshima, N.5    Hirose, T.6
  • 107
    • 84887290020 scopus 로고    scopus 로고
    • The human nuclear poly(a)-binding protein promotes RNA hyperadenylation and decay
    • Bresson S.M., Conrad N.K. The human nuclear poly(a)-binding protein promotes RNA hyperadenylation and decay. PLoS Genet. 2013, 9:e1003893.
    • (2013) PLoS Genet. , vol.9 , pp. e1003893
    • Bresson, S.M.1    Conrad, N.K.2
  • 108
    • 84870669335 scopus 로고    scopus 로고
    • Polyadenylation-dependent control of long noncoding RNA expression by the poly(A)-binding protein nuclear 1
    • Beaulieu Y.B., Kleinman C.L., Landry-Voyer A.M., Majewski J., Bachand F. Polyadenylation-dependent control of long noncoding RNA expression by the poly(A)-binding protein nuclear 1. PLoS Genet. 2012, 8:e1003078.
    • (2012) PLoS Genet. , vol.8 , pp. e1003078
    • Beaulieu, Y.B.1    Kleinman, C.L.2    Landry-Voyer, A.M.3    Majewski, J.4    Bachand, F.5
  • 109
    • 81055122667 scopus 로고    scopus 로고
    • TRNAs marked with CCACCA are targeted for degradation
    • Wilusz J.E., Whipple J.M., Phizicky E.M., Sharp P.A. tRNAs marked with CCACCA are targeted for degradation. Science 2011, 334:817-821.
    • (2011) Science , vol.334 , pp. 817-821
    • Wilusz, J.E.1    Whipple, J.M.2    Phizicky, E.M.3    Sharp, P.A.4
  • 110
    • 84922688087 scopus 로고    scopus 로고
    • On-enzyme refolding permits small RNA and tRNA surveillance by the CCA-adding enzyme
    • Kuhn C.D., Wilusz J.E., Zheng Y., Beal P.A., Joshua-Tor L. On-enzyme refolding permits small RNA and tRNA surveillance by the CCA-adding enzyme. Cell 2015, 160:644-658.
    • (2015) Cell , vol.160 , pp. 644-658
    • Kuhn, C.D.1    Wilusz, J.E.2    Zheng, Y.3    Beal, P.A.4    Joshua-Tor, L.5
  • 111
    • 62449319486 scopus 로고    scopus 로고
    • MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles
    • Sasaki Y.T., Ideue T., Sano M., Mituyama T., Hirose T. MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:2525-2530.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 2525-2530
    • Sasaki, Y.T.1    Ideue, T.2    Sano, M.3    Mituyama, T.4    Hirose, T.5
  • 112
    • 68949212914 scopus 로고    scopus 로고
    • Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA
    • Chen L.L., Carmichael G.G. Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA. Mol. Cell 2009, 35:467-478.
    • (2009) Mol. Cell , vol.35 , pp. 467-478
    • Chen, L.L.1    Carmichael, G.G.2
  • 115
    • 84918836602 scopus 로고    scopus 로고
    • The building process of the functional paraspeckle with long non-coding RNAs
    • Yamazaki T., Hirose T. The building process of the functional paraspeckle with long non-coding RNAs. Front. Biosci. 2015, 7:1-41.
    • (2015) Front. Biosci. , vol.7 , pp. 1-41
    • Yamazaki, T.1    Hirose, T.2
  • 116
    • 47049122843 scopus 로고    scopus 로고
    • Alu element-mediated gene silencing
    • Chen L.L., DeCerbo J.N., Carmichael G.G. Alu element-mediated gene silencing. EMBO J. 2008, 27:1694-1705.
    • (2008) EMBO J. , vol.27 , pp. 1694-1705
    • Chen, L.L.1    DeCerbo, J.N.2    Carmichael, G.G.3
  • 121
    • 84930271544 scopus 로고    scopus 로고
    • Long non-coding RNA NEAT1 associates with SRp40 to temporally regulate PPARgamma2 splicing during adipogenesis in 3T3-L1 cells
    • Cooper D.R., Carter G., Li P., Patel R., Watson J.E., Patel N.A. Long non-coding RNA NEAT1 associates with SRp40 to temporally regulate PPARgamma2 splicing during adipogenesis in 3T3-L1 cells. Genes 2014, 5:1050-1063.
    • (2014) Genes , vol.5 , pp. 1050-1063
    • Cooper, D.R.1    Carter, G.2    Li, P.3    Patel, R.4    Watson, J.E.5    Patel, N.A.6
  • 123
    • 27644541914 scopus 로고    scopus 로고
    • P54nrb forms a heterodimer with PSP1 that localizes to paraspeckles in an RNA-dependent manner
    • Fox A.H., Bond C.S., Lamond A.I. P54nrb forms a heterodimer with PSP1 that localizes to paraspeckles in an RNA-dependent manner. Mol. Biol. Cell 2005, 16:5304-5315.
    • (2005) Mol. Biol. Cell , vol.16 , pp. 5304-5315
    • Fox, A.H.1    Bond, C.S.2    Lamond, A.I.3
  • 124
    • 78650511795 scopus 로고    scopus 로고
    • Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs
    • Mao Y.S., Sunwoo H., Zhang B., Spector D.L. Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs. Nat. Cell Biol. 2011, 13:95-101.
    • (2011) Nat. Cell Biol. , vol.13 , pp. 95-101
    • Mao, Y.S.1    Sunwoo, H.2    Zhang, B.3    Spector, D.L.4
  • 125
    • 79551593011 scopus 로고    scopus 로고
    • Nucleation of nuclear bodies by RNA
    • Shevtsov S.P., Dundr M. Nucleation of nuclear bodies by RNA. Nat. Cell Biol. 2011, 13:167-173.
    • (2011) Nat. Cell Biol. , vol.13 , pp. 167-173
    • Shevtsov, S.P.1    Dundr, M.2
  • 126
    • 78649637489 scopus 로고    scopus 로고
    • Highly ordered spatial organization of the structural long noncoding NEAT1 RNAs within paraspeckle nuclear bodies
    • Souquere S., Beauclair G., Harper F., Fox A., Pierron G. Highly ordered spatial organization of the structural long noncoding NEAT1 RNAs within paraspeckle nuclear bodies. Mol. Biol. Cell 2010, 21:4020-4027.
    • (2010) Mol. Biol. Cell , vol.21 , pp. 4020-4027
    • Souquere, S.1    Beauclair, G.2    Harper, F.3    Fox, A.4    Pierron, G.5
  • 128
    • 33745595582 scopus 로고    scopus 로고
    • Identification and characterization of a virus-inducible non-coding RNA in mouse brain
    • Saha S., Murthy S., Rangarajan P.N. Identification and characterization of a virus-inducible non-coding RNA in mouse brain. J. Gen. Virol. 2006, 87:1991-1995.
    • (2006) J. Gen. Virol. , vol.87 , pp. 1991-1995
    • Saha, S.1    Murthy, S.2    Rangarajan, P.N.3
  • 129
    • 84874614275 scopus 로고    scopus 로고
    • NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression
    • Zhang Q., Chen C.Y., Yedavalli V.S., Jeang K.T. NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression. mBio 2013, 4:e00512-e00596.
    • (2013) mBio , vol.4 , pp. e00512-e00596
    • Zhang, Q.1    Chen, C.Y.2    Yedavalli, V.S.3    Jeang, K.T.4
  • 132
    • 79955506825 scopus 로고    scopus 로고
    • Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice
    • Nakagawa S., Naganuma T., Shioi G., Hirose T. Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice. J. Cell Biol. 2011, 193:31-39.
    • (2011) J. Cell Biol. , vol.193 , pp. 31-39
    • Nakagawa, S.1    Naganuma, T.2    Shioi, G.3    Hirose, T.4
  • 135
    • 57749186870 scopus 로고    scopus 로고
    • Spliceosomal cleavage generates the 3' end of telomerase RNA
    • Box J.A., Bunch J.T., Tang W., Baumann P. Spliceosomal cleavage generates the 3' end of telomerase RNA. Nature 2008, 456:910-914.
    • (2008) Nature , vol.456 , pp. 910-914
    • Box, J.A.1    Bunch, J.T.2    Tang, W.3    Baumann, P.4
  • 138
    • 33847187076 scopus 로고    scopus 로고
    • Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs
    • Matera A.G., Terns R.M., Terns M.P. Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs. Nat. Rev. Mol. Cell Biol. 2007, 8:209-220.
    • (2007) Nat. Rev. Mol. Cell Biol. , vol.8 , pp. 209-220
    • Matera, A.G.1    Terns, R.M.2    Terns, M.P.3
  • 143
    • 34447107760 scopus 로고    scopus 로고
    • The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila
    • Okamura K., Hagen J.W., Duan H., Tyler D.M., Lai E.C. The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila. Cell 2007, 130:89-100.
    • (2007) Cell , vol.130 , pp. 89-100
    • Okamura, K.1    Hagen, J.W.2    Duan, H.3    Tyler, D.M.4    Lai, E.C.5
  • 144
    • 84869151299 scopus 로고    scopus 로고
    • Stable intronic sequence RNA (sisRNA), a new class of noncoding RNA from the oocyte nucleus of Xenopus tropicalis
    • Gardner E.J., Nizami Z.F., Talbot C.C., Gall J.G. Stable intronic sequence RNA (sisRNA), a new class of noncoding RNA from the oocyte nucleus of Xenopus tropicalis. Genes Dev. 2012, 26:2550-2559.
    • (2012) Genes Dev. , vol.26 , pp. 2550-2559
    • Gardner, E.J.1    Nizami, Z.F.2    Talbot, C.C.3    Gall, J.G.4
  • 146
    • 0026661135 scopus 로고
    • A spliced intron accumulates as a lariat in the nucleus of T cells
    • Qian L., Vu M.N., Carter M., Wilkinson M.F. A spliced intron accumulates as a lariat in the nucleus of T cells. Nucleic Acids Res. 1992, 20:5345-5350.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 5345-5350
    • Qian, L.1    Vu, M.N.2    Carter, M.3    Wilkinson, M.F.4
  • 147
    • 84956906428 scopus 로고    scopus 로고
    • Expanded identification and characterization of mammalian circular RNAs
    • Guo J.U., Agarwal V., Guo H., Bartel D.P. Expanded identification and characterization of mammalian circular RNAs. Genome Biol. 2014, 15:409.
    • (2014) Genome Biol. , vol.15 , pp. 409
    • Guo, J.U.1    Agarwal, V.2    Guo, H.3    Bartel, D.P.4
  • 149
    • 84876580450 scopus 로고    scopus 로고
    • Molecular biology. A circuitous route to noncoding RNA
    • Wilusz J.E., Sharp P.A. Molecular biology. A circuitous route to noncoding RNA. Science 2013, 340:440-441.
    • (2013) Science , vol.340 , pp. 440-441
    • Wilusz, J.E.1    Sharp, P.A.2
  • 152
    • 84915820022 scopus 로고    scopus 로고
    • Genome-wide analysis of Drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation
    • Westholm J.O., Miura P., Olson S., Shenker S., Joseph B., Sanfilippo P., Celniker S.E., Graveley B.R., Lai E.C. Genome-wide analysis of Drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation. Cell Rep. 2014, 9:1966-1980.
    • (2014) Cell Rep. , vol.9 , pp. 1966-1980
    • Westholm, J.O.1    Miura, P.2    Olson, S.3    Shenker, S.4    Joseph, B.5    Sanfilippo, P.6    Celniker, S.E.7    Graveley, B.R.8    Lai, E.C.9
  • 154
    • 84908093894 scopus 로고    scopus 로고
    • Short intronic repeat sequences facilitate circular RNA production
    • Liang D., Wilusz J.E. Short intronic repeat sequences facilitate circular RNA production. Genes Dev. 2014, 28:2233-2247.
    • (2014) Genes Dev. , vol.28 , pp. 2233-2247
    • Liang, D.1    Wilusz, J.E.2
  • 155
    • 84907509527 scopus 로고    scopus 로고
    • Complementary sequence-mediated exon circularization
    • Zhang X.O., Wang H.B., Zhang Y., Lu X., Chen L.L., Yang L. Complementary sequence-mediated exon circularization. Cell 2014, 159:134-147.
    • (2014) Cell , vol.159 , pp. 134-147
    • Zhang, X.O.1    Wang, H.B.2    Zhang, Y.3    Lu, X.4    Chen, L.L.5    Yang, L.6
  • 158
    • 0029585914 scopus 로고
    • Inverted repeats are necessary for circularization of the mouse testis Sry transcript
    • Dubin R.A., Kazmi M.A., Ostrer H. Inverted repeats are necessary for circularization of the mouse testis Sry transcript. Gene 1995, 167:245-248.
    • (1995) Gene , vol.167 , pp. 245-248
    • Dubin, R.A.1    Kazmi, M.A.2    Ostrer, H.3
  • 159
    • 78650696753 scopus 로고    scopus 로고
    • Expression of linear and novel circular forms of an INK4/ARF-associated non-coding RNA correlates with atherosclerosis risk
    • Burd C.E., Jeck W.R., Liu Y., Sanoff H.K., Wang Z., Sharpless N.E. Expression of linear and novel circular forms of an INK4/ARF-associated non-coding RNA correlates with atherosclerosis risk. PLoS Genet. 2010, 6:e1001233.
    • (2010) PLoS Genet. , vol.6 , pp. e1001233
    • Burd, C.E.1    Jeck, W.R.2    Liu, Y.3    Sanoff, H.K.4    Wang, Z.5    Sharpless, N.E.6


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