-
1
-
-
0018065398
-
Patterns of synthesis and accumulation of heterogeneous RNA in lampbrush stage oocytes of Xenopus laevis (Daudin)
-
Anderson DM, Smith LD. 1978. Patterns of synthesis and accumulation of heterogeneous RNA in lampbrush stage oocytes of Xenopus laevis (Daudin). Dev Biol 67: 274-285.
-
(1978)
Dev Biol
, vol.67
, pp. 274-285
-
-
Anderson, D.M.1
Smith, L.D.2
-
2
-
-
0344622123
-
Spliced segments at the 59 terminus of adenovirus 2 late mRNA
-
Berget SM, Moore C, Sharp PA. 1977. Spliced segments at the 59 terminus of adenovirus 2 late mRNA. Proc Natl Acad Sci 74: 3171-3175.
-
(1977)
Proc Natl Acad Sci
, vol.74
, pp. 3171-3175
-
-
Berget, S.M.1
Moore, C.2
Sharp, P.A.3
-
3
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
Black DL. 2003. Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem 72: 291-336.
-
(2003)
Annu Rev Biochem
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
4
-
-
75549089639
-
Xenbase: Gene expression and improved integration
-
doi: 10.1093/nar/gkp953
-
Bowes JB, Snyder KA, Segerdell E, Jarabek CJ, Azam K, Zorn AM, Vize PD. 2010. Xenbase: Gene expression and improved integration. Nucleic Acids Res 38: D607-D612. doi: 10.1093/nar/gkp953.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Bowes, J.B.1
Snyder, K.A.2
Segerdell, E.3
Jarabek, C.J.4
Azam, K.5
Zorn, A.M.6
Vize, P.D.7
-
6
-
-
0017688583
-
An amazing sequence arrangement at the 59 ends of adenovirus 2 messenger RNA
-
Chow LT, Gelinas RE, Broker TR, Roberts RJ. 1977. An amazing sequence arrangement at the 59 ends of adenovirus 2 messenger RNA. Cell 12: 1-8.
-
(1977)
Cell
, vol.12
, pp. 1-8
-
-
Chow, L.T.1
Gelinas, R.E.2
Broker, T.R.3
Roberts, R.J.4
-
7
-
-
0033064680
-
The stability and fate of a spliced intron from vertebrate cells
-
Clement JQ, Qian L, Kaplinsky N, Wilkinson MF. 1999. The stability and fate of a spliced intron from vertebrate cells. RNA 5: 206-220.
-
(1999)
RNA
, vol.5
, pp. 206-220
-
-
Clement, J.Q.1
Qian, L.2
Kaplinsky, N.3
Wilkinson, M.F.4
-
9
-
-
0018414850
-
Poly(A)+ RNA metabolism during oogenesis in Xenopus laevis
-
Dolecki GJ, Smith LD. 1979. Poly(A)+ RNA metabolism during oogenesis in Xenopus laevis. Dev Biol 69: 217-236.
-
(1979)
Dev Biol
, vol.69
, pp. 217-236
-
-
Dolecki, G.J.1
Smith, L.D.2
-
10
-
-
0013991992
-
Nuclear RNA of the salamander oocyte
-
Gall JG. 1966. Nuclear RNA of the salamander oocyte. In Natl Cancer Inst Monogr 23: 475-488.
-
(1966)
Natl Cancer Inst Monogr
, vol.23
, pp. 475-488
-
-
Gall, J.G.1
-
11
-
-
33646073458
-
Exporting actin
-
Gall JG. 2006. Exporting actin. Nat Cell Biol 8: 205-207.
-
(2006)
Nat Cell Biol
, vol.8
, pp. 205-207
-
-
Gall, J.G.1
-
12
-
-
0031897697
-
Assembly of lampbrush chromosomes from sperm chromatin
-
Gall JG, Murphy C. 1998. Assembly of lampbrush chromosomes from sperm chromatin. Mol Biol Cell 9: 733-747.
-
(1998)
Mol Biol Cell
, vol.9
, pp. 733-747
-
-
Gall, J.G.1
Murphy, C.2
-
13
-
-
77951879206
-
Examining the contents of isolated Xenopus germinal vesicles
-
Gall JG, Wu Z. 2010. Examining the contents of isolated Xenopus germinal vesicles. Methods 51: 45-51.
-
(2010)
Methods
, vol.51
, pp. 45-51
-
-
Gall, J.G.1
Wu, Z.2
-
14
-
-
0002520333
-
The transcription unit of lampbrush chromosomes
-
(ed. S Subtelny and F Kafatos, Alan R. Liss, New York
-
Gall JG, Diaz MO, Stephenson EC, Mahon KA. 1983. The transcription unit of lampbrush chromosomes. In Gene structure and regulation in development (ed. S Subtelny and F Kafatos), pp. 137-146. Alan R. Liss, New York.
-
(1983)
Gene Structure and Regulation In Development
, pp. 137-146
-
-
Gall, J.G.1
Diaz, M.O.2
Stephenson, E.C.3
Mahon, K.A.4
-
15
-
-
77951823093
-
The genome of the Western clawed frog Xenopus tropicalis
-
Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, et al. 2010. The genome of the Western clawed frog Xenopus tropicalis. Science 328: 633-636.
-
(2010)
Science
, vol.328
, pp. 633-636
-
-
Hellsten, U.1
Harland, R.M.2
Gilchrist, M.J.3
Hendrix, D.4
Jurka, J.5
Kapitonov, V.6
Ovcharenko, I.7
Putnam, N.H.8
Shu, S.9
Taher, L.10
-
16
-
-
84860513145
-
The spliceosome: A flexible, reversible macromolecular machine
-
Hoskins AA, Moore MJ. 2012. The spliceosome: A flexible, reversible macromolecular machine. Trends Biochem Sci 37: 179-188.
-
(2012)
Trends Biochem Sci
, vol.37
, pp. 179-188
-
-
Hoskins, A.A.1
Moore, M.J.2
-
18
-
-
0026655632
-
Introns excised from the Delta primary transcript are localized near sites of Delta transcription
-
Kopczynski CC, Muskavitch MA. 1992. Introns excised from the Delta primary transcript are localized near sites of Delta transcription. J Cell Biol 119: 503-512.
-
(1992)
J Cell Biol
, vol.119
, pp. 503-512
-
-
Kopczynski, C.C.1
Muskavitch, M.A.2
-
19
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
doi: 10.1186/gb-2009-10-3-r25
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25. doi: 10.1186/gb-2009-10-3-r25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
20
-
-
11144261362
-
The behavior of isolated nuclei
-
Macgregor HC. 1962. The behavior of isolated nuclei. Exp Cell Res 26: 520-525.
-
(1962)
Exp Cell Res
, vol.26
, pp. 520-525
-
-
Macgregor, H.C.1
-
22
-
-
0024059379
-
An excised SV40 intron accumulates and is stable in Xenopus laevis oocytes
-
Michaeli T, Pan ZQ, Prives C. 1988. An excised SV40 intron accumulates and is stable in Xenopus laevis oocytes. Genes Dev 2: 1012-1020.
-
(1988)
Genes Dev
, vol.2
, pp. 1012-1020
-
-
Michaeli, T.1
Pan, Z.Q.2
Prives, C.3
-
23
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. 2008. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5: 621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
24
-
-
78649289872
-
Global analysis of nascent RNA reveals transcriptional pausing in terminal exons
-
Oesterreich FC, Preibisch S, Neugebauer KM. 2010. Global analysis of nascent RNA reveals transcriptional pausing in terminal exons. Mol Cell 40: 571-581.
-
(2010)
Mol Cell
, vol.40
, pp. 571-581
-
-
Oesterreich, F.C.1
Preibisch, S.2
Neugebauer, K.M.3
-
25
-
-
0000866275
-
Intronic snoRNA biosynthesis in Saccharomyces cerevisiae depends on the lariat-debranching enzyme: Intron length effects and activity of a precursor snoRNA
-
Ooi SL, Samarsky DA, Fournier MJ, Boeke JD. 1998. Intronic snoRNA biosynthesis in Saccharomyces cerevisiae depends on the lariat-debranching enzyme: Intron length effects and activity of a precursor snoRNA. RNA 4: 1096-1110.
-
(1998)
RNA
, vol.4
, pp. 1096-1110
-
-
Ooi, S.L.1
Samarsky, D.A.2
Fournier, M.J.3
Boeke, J.D.4
-
26
-
-
0023814243
-
Assembly of functional U1 and U2 human-amphibian hybrid snRNPs in Xenopus laevis oocytes
-
Pan Z-Q, Prives C. 1988. Assembly of functional U1 and U2 human-amphibian hybrid snRNPs in Xenopus laevis oocytes. Science 241: 1328-1331.
-
(1988)
Science
, vol.241
, pp. 1328-1331
-
-
Pan, Z.-Q.1
Prives, C.2
-
27
-
-
0031935899
-
Processing of the precursors to small nucleolar RNAs and rRNAs requires common components
-
Petfalski E, Dandekar T, Henry Y, Tollervey D. 1998. Processing of the precursors to small nucleolar RNAs and rRNAs requires common components. Mol Cell Biol 18: 1181-1189.
-
(1998)
Mol Cell Biol
, vol.18
, pp. 1181-1189
-
-
Petfalski, E.1
Dandekar, T.2
Henry, Y.3
Tollervey, D.4
-
28
-
-
0026661135
-
A spliced intron accumulates as a lariat in the nucleus of T cells
-
Qian L, Vu MN, Carter M, Wilkinson MF. 1992. A spliced intron accumulates as a lariat in the nucleus of T cells. Nucleic Acids Res 20: 5345-5350.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 5345-5350
-
-
Qian, L.1
Vu, M.N.2
Carter, M.3
Wilkinson, M.F.4
-
29
-
-
41549097210
-
Translational control by cytoplasmic polyadenylation in Xenopus oocytes
-
Radford HE, Meijer HA, de Moor CH. 2008. Translational control by cytoplasmic polyadenylation in Xenopus oocytes. Biochim Biophys Acta 1779: 217-229.
-
(2008)
Biochim Biophys Acta
, vol.1779
, pp. 217-229
-
-
Radford, H.E.1
Meijer, H.A.2
de Moor, C.H.3
-
30
-
-
84863863314
-
Translational control in oocyte development
-
doi: 10.1101/cshperspect.a002758
-
Richter JD, Lasko P. 2011. Translational control in oocyte development. Cold Spring Harb Perspect Biol 3: a002758. doi: 10.1101/cshperspect.a002758.
-
(2011)
Cold Spring Harb Perspect Biol
, vol.3
-
-
Richter, J.D.1
Lasko, P.2
-
31
-
-
78651271733
-
Integrative genomics viewer
-
Robinson JT, Thorvaldsdottir H, Winckler W, Guttman M, Lander ES, Getz G, Mesirov JP. 2011. Integrative genomics viewer. Nat Biotechnol 29: 24-26.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdottir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
Getz, G.6
Mesirov, J.P.7
-
33
-
-
33644847698
-
The evolution of spliceosomal introns: Patterns, puzzles and progress
-
Roy SW, Gilbert W. 2006. The evolution of spliceosomal introns: Patterns, puzzles and progress. Nat Rev Genet 7: 211-221.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 211-221
-
-
Roy, S.W.1
Gilbert, W.2
-
34
-
-
0022424110
-
An RNA processing activity that debranches RNA lariats
-
Ruskin B, Green MR. 1985. An RNA processing activity that debranches RNA lariats. Science 229: 135-140.
-
(1985)
Science
, vol.229
, pp. 135-140
-
-
Ruskin, B.1
Green, M.R.2
-
35
-
-
0023498850
-
Splicing of messenger RNA precursors
-
Sharp PA, Konarksa MM, Grabowski PJ, Lamond AI, Marciniak R, Seiler SR. 1987. Splicing of messenger RNA precursors. Cold Spring Harb Symp Quant Biol 52: 277-285.
-
(1987)
Cold Spring Harb Symp Quant Biol
, vol.52
, pp. 277-285
-
-
Sharp, P.A.1
Konarksa, M.M.2
Grabowski, P.J.3
Lamond, A.I.4
Marciniak, R.5
Seiler, S.R.6
-
36
-
-
84855824475
-
Widespread transcription in an amphibian oocyte relates to its reprogramming activity on transplanted somatic nuclei
-
Simeoni I, Gilchrist MJ, Garrett N, Armisen J, Gurdon JB. 2012. Widespread transcription in an amphibian oocyte relates to its reprogramming activity on transplanted somatic nuclei. Stem Cells Dev 21: 181-190.
-
(2012)
Stem Cells Dev
, vol.21
, pp. 181-190
-
-
Simeoni, I.1
Gilchrist, M.J.2
Garrett, N.3
Armisen, J.4
Gurdon, J.B.5
-
37
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: Discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
38
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. 2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28: 511-515.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
39
-
-
0027077545
-
Transcription on lampbrush chromosome loops in the absence of U2 snRNA
-
Tsvetkov A, Jantsch M, Wu Z, Murphy C, Gall JG. 1992. Transcription on lampbrush chromosome loops in the absence of U2 snRNA. Mol Biol Cell 3: 249-261.
-
(1992)
Mol Biol Cell
, vol.3
, pp. 249-261
-
-
Tsvetkov, A.1
Jantsch, M.2
Wu, Z.3
Murphy, C.4
Gall, J.G.5
-
40
-
-
81855183655
-
Single-molecule imaging of transcriptionally coupled and uncoupled splicing
-
Vargas DY, Shah K, Batish M, Levandoski M, Sinha S, Marras SA, Schedl P, Tyagi S. 2011. Single-molecule imaging of transcriptionally coupled and uncoupled splicing. Cell 147: 1054-1065.
-
(2011)
Cell
, vol.147
, pp. 1054-1065
-
-
Vargas, D.Y.1
Shah, K.2
Batish, M.3
Levandoski, M.4
Sinha, S.5
Marras, S.A.6
Schedl, P.7
Tyagi, S.8
-
41
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNP machine
-
Wahl MC, Will CL, Luhrmann R. 2009. The spliceosome: Design principles of a dynamic RNP machine. Cell 136: 701-718.
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Luhrmann, R.3
-
42
-
-
0015828732
-
Protein incorporation by isolated amphibian oocytes: III. Optimum incubation conditions
-
Wallace RA, Jared DW, Dumont JN, Sega MW. 1973. Protein incorporation by isolated amphibian oocytes: III. Optimum incubation conditions. J Exp Zool 184: 321-333.
-
(1973)
J Exp Zool
, vol.184
, pp. 321-333
-
-
Wallace, R.A.1
Jared, D.W.2
Dumont, J.N.3
Sega, M.W.4
-
43
-
-
79951551684
-
Genomewide characterization of non-polyadenylated RNAs
-
doi: 10.1186/gb-2011-12-2-r16
-
Yang L, Duff MO, Graveley BR, Carmichael GG, Chen LL. 2011. Genomewide characterization of non-polyadenylated RNAs. Genome Biol 12: R16. doi: 10.1186/gb-2011-12-2-r16.
-
(2011)
Genome Biol
, vol.12
-
-
Yang, L.1
Duff, M.O.2
Graveley, B.R.3
Carmichael, G.G.4
Chen, L.L.5
|