-
1
-
-
70349333227
-
The evolutionary consequences of erroneous protein synthesis
-
Allan Drummond D, Wilke CO, The evolutionary consequences of erroneous protein synthesis. Nat Rev Genet. 2009;10: 715–724. doi: 10.1038/nrg2662 19763154
-
(2009)
Nat Rev Genet
, vol.10
, pp. 715-724
-
-
Allan Drummond, D.1
Wilke, C.O.2
-
2
-
-
78449288755
-
Cellular mechanisms that control mistranslation
-
Reynolds NM, Lazazzera BA, Ibba M, Cellular mechanisms that control mistranslation. Nat Rev Microbiol. 2010;8: 849–856. doi: 10.1038/nrmicro2472 21079633
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 849-856
-
-
Reynolds, N.M.1
Lazazzera, B.A.2
Ibba, M.3
-
3
-
-
33845895536
-
The frequency of translational misreading errors in E. coli is largely determined by tRNA competition
-
Kramer EB, Farabaugh PJ, The frequency of translational misreading errors in E. coli is largely determined by tRNA competition. RNA. 2007;13: 87–96. 17095544
-
(2007)
RNA
, vol.13
, pp. 87-96
-
-
Kramer, E.B.1
Farabaugh, P.J.2
-
4
-
-
0034643336
-
Rapid degradation of a large fraction of newly synthesized proteins by proteasomes
-
Schubert U, Antón LC, Gibbs J, Norbury CC, Yewdell JW, Bennink JR, Rapid degradation of a large fraction of newly synthesized proteins by proteasomes. Nature. 2000;404: 770–774. 10783891
-
(2000)
Nature
, vol.404
, pp. 770-774
-
-
Schubert, U.1
Antón, L.C.2
Gibbs, J.3
Norbury, C.C.4
Yewdell, J.W.5
Bennink, J.R.6
-
5
-
-
29344464782
-
Protein Synthesis upon Acute Nutrient Restriction Relies on Proteasome Function
-
Vabulas RM, Hartl FU, Protein Synthesis upon Acute Nutrient Restriction Relies on Proteasome Function. Science. 2005;310: 1960–1963. 16373576
-
(2005)
Science
, vol.310
, pp. 1960-1963
-
-
Vabulas, R.M.1
Hartl, F.U.2
-
6
-
-
55449126342
-
Mistranslation of Membrane Proteins and Two-Component System Activation Trigger Antibiotic-Mediated Cell Death
-
Kohanski MA, Dwyer DJ, Wierzbowski J, Cottarel G, Collins JJ, Mistranslation of Membrane Proteins and Two-Component System Activation Trigger Antibiotic-Mediated Cell Death. Cell. 2008;135: 679–690. doi: 10.1016/j.cell.2008.09.038 19013277
-
(2008)
Cell
, vol.135
, pp. 679-690
-
-
Kohanski, M.A.1
Dwyer, D.J.2
Wierzbowski, J.3
Cottarel, G.4
Collins, J.J.5
-
7
-
-
39149086991
-
A genetic code alteration generates a proteome of high diversity in the human pathogen Candida albicans
-
Gomes AC, Miranda I, Silva RM, Moura GR, Thomas B, Akoulitchev A, et al. A genetic code alteration generates a proteome of high diversity in the human pathogen Candida albicans. Genome Biol. 2007;8: R206. 17916231
-
(2007)
Genome Biol
, vol.8
, pp. R206
-
-
Gomes, A.C.1
Miranda, I.2
Silva, R.M.3
Moura, G.R.4
Thomas, B.5
Akoulitchev, A.6
-
8
-
-
77954298382
-
Hyperaccurate and Error-Prone Ribosomes Exploit Distinct Mechanisms during tRNA Selection
-
Zaher HS, Green R, Hyperaccurate and Error-Prone Ribosomes Exploit Distinct Mechanisms during tRNA Selection. Mol Cell. 2010;39: 110–120. doi: 10.1016/j.molcel.2010.06.009 20603079
-
(2010)
Mol Cell
, vol.39
, pp. 110-120
-
-
Zaher, H.S.1
Green, R.2
-
9
-
-
33748432548
-
Editing-defective tRNA synthetase causes protein misfolding and neurodegeneration
-
Lee JW, Beebe K, Nangle LA, Jang J, Longo-Guess CM, Cook SA, et al. Editing-defective tRNA synthetase causes protein misfolding and neurodegeneration. Nature. 2006;443: 50–55. 16906134
-
(2006)
Nature
, vol.443
, pp. 50-55
-
-
Lee, J.W.1
Beebe, K.2
Nangle, L.A.3
Jang, J.4
Longo-Guess, C.M.5
Cook, S.A.6
-
10
-
-
84862338006
-
Low level genome mistranslations deregulate the transcriptome and translatome and generate proteotoxic stress in yeast
-
Paredes JA, Carreto L, Simões J, Bezerra AR, Gomes AC, Santamaria R, et al. Low level genome mistranslations deregulate the transcriptome and translatome and generate proteotoxic stress in yeast. BMC Biol. 2012;10: 55. doi: 10.1186/1741-7007-10-55 22715922
-
(2012)
BMC Biol
, vol.10
, pp. 55
-
-
Paredes, J.A.1
Carreto, L.2
Simões, J.3
Bezerra, A.R.4
Gomes, A.C.5
Santamaria, R.6
-
11
-
-
0021528060
-
Hyper-accurate ribosomes inhibit growth
-
Ruusala T, Andersson D, Ehrenberg M, Kurland CG, Hyper-accurate ribosomes inhibit growth. EMBO J. 1984;3: 2575–2580. 6391914
-
(1984)
EMBO J
, vol.3
, pp. 2575-2580
-
-
Ruusala, T.1
Andersson, D.2
Ehrenberg, M.3
Kurland, C.G.4
-
12
-
-
81355142140
-
Error prevention and mitigation as forces in the evolution of genes and genomes
-
Warnecke T, Hurst LD, Error prevention and mitigation as forces in the evolution of genes and genomes. Nat Rev Genet. 2011;12: 875–881. doi: 10.1038/nrg3092 22094950
-
(2011)
Nat Rev Genet
, vol.12
, pp. 875-881
-
-
Warnecke, T.1
Hurst, L.D.2
-
13
-
-
33749176269
-
Cytosolic chaperonin prevents polyglutamine toxicity with altering the aggregation state
-
Kitamura A, Kubota H, Pack C-G, Matsumoto G, Hirayama S, Takahashi Y, et al. Cytosolic chaperonin prevents polyglutamine toxicity with altering the aggregation state. Nat Cell Biol. 2006;8: 1163–1169. 16980958
-
(2006)
Nat Cell Biol
, vol.8
, pp. 1163-1169
-
-
Kitamura, A.1
Kubota, H.2
Pack, C.-G.3
Matsumoto, G.4
Hirayama, S.5
Takahashi, Y.6
-
14
-
-
84906791334
-
An Inducible Chaperone Adapts Proteasome Assembly to Stress
-
Hanssum A, Zhong Z, Rousseau A, Krzyzosiak A, Sigurdardottir A, Bertolotti A, An Inducible Chaperone Adapts Proteasome Assembly to Stress. Mol Cell. 2014;55: 566–577. doi: 10.1016/j.molcel.2014.06.017 25042801
-
(2014)
Mol Cell
, vol.55
, pp. 566-577
-
-
Hanssum, A.1
Zhong, Z.2
Rousseau, A.3
Krzyzosiak, A.4
Sigurdardottir, A.5
Bertolotti, A.6
-
15
-
-
84870427355
-
Cellular Strategies for Regulating Functional and Nonfunctional Protein Aggregation
-
Gsponer J, Babu MM, Cellular Strategies for Regulating Functional and Nonfunctional Protein Aggregation. Cell Rep. 2012;2: 1425–1437. doi: 10.1016/j.celrep.2012.09.036 23168257
-
(2012)
Cell Rep
, vol.2
, pp. 1425-1437
-
-
Gsponer, J.1
Babu, M.M.2
-
16
-
-
0032911874
-
Selective advantages created by codon ambiguity allowed for the evolution of an alternative genetic code in Candida spp
-
Santos MAS, Cheesman C, Costa V, Moradas-Ferreira P, Tuite MF, Selective advantages created by codon ambiguity allowed for the evolution of an alternative genetic code in Candida spp. Mol Microbiol. 1999;31: 937–947. 10048036
-
(1999)
Mol Microbiol
, vol.31
, pp. 937-947
-
-
Santos, M.A.S.1
Cheesman, C.2
Costa, V.3
Moradas-Ferreira, P.4
Tuite, M.F.5
-
17
-
-
80052182956
-
Unveiling the structural basis for translational ambiguity tolerance in a human fungal pathogen
-
Rocha R, Pereira PJB, Santos MAS, Macedo-Ribeiro S, Unveiling the structural basis for translational ambiguity tolerance in a human fungal pathogen. Proc Natl Acad Sci. 2011;108: 14091–14096. doi: 10.1073/pnas.1102835108 21825144
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 14091-14096
-
-
Rocha, R.1
Pereira, P.J.B.2
Santos, M.A.S.3
Macedo-Ribeiro, S.4
-
18
-
-
0029816377
-
Transfer RNA structural change is a key element in the reassignment of the CUG codon in Candida albicans
-
Santos MA, Perreau VM, Tuite MF, Transfer RNA structural change is a key element in the reassignment of the CUG codon in Candida albicans. EMBO J. 1996;15: 5060–5068. 8890179
-
(1996)
EMBO J
, vol.15
, pp. 5060-5068
-
-
Santos, M.A.1
Perreau, V.M.2
Tuite, M.F.3
-
19
-
-
35648984625
-
Critical roles for a genetic code alteration in the evolution of the genus Candida
-
Silva RM, Paredes JA, Moura GR, Manadas B, Lima-Costa T, Rocha R, et al. Critical roles for a genetic code alteration in the evolution of the genus Candida. EMBO J. 2007;26: 4555–4565. 17932489
-
(2007)
EMBO J
, vol.26
, pp. 4555-4565
-
-
Silva, R.M.1
Paredes, J.A.2
Moura, G.R.3
Manadas, B.4
Lima-Costa, T.5
Rocha, R.6
-
20
-
-
0032508559
-
Missense translation errors in Saccharomyces cerevisiae1
-
Stansfield I, Jones KM, Herbert P, Lewendon A, Shaw WV, Tuite MF, Missense translation errors in Saccharomyces cerevisiae1. J Mol Biol. 1998;282: 13–24. 9733638
-
(1998)
J Mol Biol
, vol.282
, pp. 13-24
-
-
Stansfield, I.1
Jones, K.M.2
Herbert, P.3
Lewendon, A.4
Shaw, W.V.5
Tuite, M.F.6
-
21
-
-
0037438569
-
Automated screening in environmental arrays allows analysis of quantitative phenotypic profiles in Saccharomyces cerevisiae
-
Warringer J, Blomberg A, Automated screening in environmental arrays allows analysis of quantitative phenotypic profiles in Saccharomyces cerevisiae. Yeast. 2003;20: 53–67. 12489126
-
(2003)
Yeast
, vol.20
, pp. 53-67
-
-
Warringer, J.1
Blomberg, A.2
-
22
-
-
0347994900
-
High-resolution yeast phenomics resolves different physiological features in the saline response
-
Warringer J, Ericson E, Fernandez L, Nerman O, Blomberg A, High-resolution yeast phenomics resolves different physiological features in the saline response. Proc Natl Acad Sci. 2003;100: 15724–15729. 14676322
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 15724-15729
-
-
Warringer, J.1
Ericson, E.2
Fernandez, L.3
Nerman, O.4
Blomberg, A.5
-
23
-
-
0013203966
-
FunSpec: a web-based cluster interpreter for yeast
-
Robinson MD, Grigull J, Mohammad N, Hughes TR, FunSpec: a web-based cluster interpreter for yeast. BMC Bioinformatics. 2002;3: 35. 12431279
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 35
-
-
Robinson, M.D.1
Grigull, J.2
Mohammad, N.3
Hughes, T.R.4
-
24
-
-
14844282303
-
Central role of Ifh1p–Fhl1p interaction in the synthesis of yeast ribosomal proteins
-
Rudra D, Zhao Y, Warner JR, Central role of Ifh1p–Fhl1p interaction in the synthesis of yeast ribosomal proteins. EMBO J. 2005;24: 533–542. 15692568
-
(2005)
EMBO J
, vol.24
, pp. 533-542
-
-
Rudra, D.1
Zhao, Y.2
Warner, J.R.3
-
25
-
-
58149302265
-
Chemical-genetic profile analysis in yeast suggests that a previously uncharacterized open reading frame, YBR261C, affects protein synthesis
-
Alamgir M, Eroukova V, Jessulat M, Xu J, Golshani A, Chemical-genetic profile analysis in yeast suggests that a previously uncharacterized open reading frame, YBR261C, affects protein synthesis. BMC Genomics. 2008;9: 583. doi: 10.1186/1471-2164-9-583 19055778
-
(2008)
BMC Genomics
, vol.9
, pp. 583
-
-
Alamgir, M.1
Eroukova, V.2
Jessulat, M.3
Xu, J.4
Golshani, A.5
-
26
-
-
0032778953
-
Mutations in Translation Initiation Factors Lead to Increased Rates of Deadenylation and Decapping of mRNAs in Saccharomyces cerevisiae
-
Schwartz DC, Parker R, Mutations in Translation Initiation Factors Lead to Increased Rates of Deadenylation and Decapping of mRNAs in Saccharomyces cerevisiae. Mol Cell Biol. 1999;19: 5247–5256. 10409716
-
(1999)
Mol Cell Biol
, vol.19
, pp. 5247-5256
-
-
Schwartz, D.C.1
Parker, R.2
-
27
-
-
50649116818
-
Misfolded proteins partition between two distinct quality control compartments
-
Kaganovich D, Kopito R, Frydman J, Misfolded proteins partition between two distinct quality control compartments. Nature. 2008;454: 1088–1095. doi: 10.1038/nature07195 18756251
-
(2008)
Nature
, vol.454
, pp. 1088-1095
-
-
Kaganovich, D.1
Kopito, R.2
Frydman, J.3
-
28
-
-
84871596612
-
Aneuploidy causes proteotoxic stress in yeast
-
Oromendia AB, Dodgson SE, Amon A, Aneuploidy causes proteotoxic stress in yeast. Genes Dev. 2012;26: 2696–2708. doi: 10.1101/gad.207407.112 23222101
-
(2012)
Genes Dev
, vol.26
, pp. 2696-2708
-
-
Oromendia, A.B.1
Dodgson, S.E.2
Amon, A.3
-
29
-
-
77957237291
-
Identification of Aneuploidy-Tolerating Mutations
-
Torres EM, Dephoure N, Panneerselvam A, Tucker CM, Whittaker CA, Gygi SP, et al. Identification of Aneuploidy-Tolerating Mutations. Cell. 2010;143: 71–83. doi: 10.1016/j.cell.2010.08.038 20850176
-
(2010)
Cell
, vol.143
, pp. 71-83
-
-
Torres, E.M.1
Dephoure, N.2
Panneerselvam, A.3
Tucker, C.M.4
Whittaker, C.A.5
Gygi, S.P.6
-
30
-
-
79959837318
-
An Evolutionary Trade-Off between Protein Turnover Rate and Protein Aggregation Favors a Higher Aggregation Propensity in Fast Degrading Proteins
-
De Baets G, Reumers J, Delgado Blanco J, Dopazo J, Schymkowitz J, Rousseau F, An Evolutionary Trade-Off between Protein Turnover Rate and Protein Aggregation Favors a Higher Aggregation Propensity in Fast Degrading Proteins. PLoS Comput Biol. 2011;7: e1002090. doi: 10.1371/journal.pcbi.1002090 21731483
-
(2011)
PLoS Comput Biol
, vol.7
, pp. e1002090
-
-
De Baets, G.1
Reumers, J.2
Delgado Blanco, J.3
Dopazo, J.4
Schymkowitz, J.5
Rousseau, F.6
-
31
-
-
0028018268
-
The ubiquitin-proteasome proteolytic pathway
-
Ciechanover A, The ubiquitin-proteasome proteolytic pathway. Cell. 1994;79: 13–21. 7923371
-
(1994)
Cell
, vol.79
, pp. 13-21
-
-
Ciechanover, A.1
-
32
-
-
84898615077
-
Opposing roles of Ubp3-dependent deubiquitination regulate replicative life span and heat resistance
-
Öling D, Eisele F, Kvint K, Nyström T, Opposing roles of Ubp3-dependent deubiquitination regulate replicative life span and heat resistance. EMBO J. 2014;33: 747–761. doi: 10.1002/embj.201386822 24596250
-
(2014)
EMBO J
, vol.33
, pp. 747-761
-
-
Öling, D.1
Eisele, F.2
Kvint, K.3
Nyström, T.4
-
33
-
-
0344629427
-
Ubiquitin Depletion as a Key Mediator of Toxicity by Translational Inhibitors
-
Hanna J, Leggett DS, Finley D, Ubiquitin Depletion as a Key Mediator of Toxicity by Translational Inhibitors. Mol Cell Biol. 2003;23: 9251–9261. 14645527
-
(2003)
Mol Cell Biol
, vol.23
, pp. 9251-9261
-
-
Hanna, J.1
Leggett, D.S.2
Finley, D.3
-
34
-
-
0037414784
-
20 S Proteasome from Saccharomyces cerevisiae Is Responsive to Redox Modifications and IsS-Glutathionylated
-
Demasi M, Silva GM, Netto LES, 20 S Proteasome from Saccharomyces cerevisiae Is Responsive to Redox Modifications and IsS-Glutathionylated. J Biol Chem. 2003;278: 679–685. 12409293
-
(2003)
J Biol Chem
, vol.278
, pp. 679-685
-
-
Demasi, M.1
Silva, G.M.2
Netto, L.E.S.3
-
35
-
-
34548131710
-
Effects of Aneuploidy on Cellular Physiology and Cell Division in Haploid Yeast
-
Torres EM, Sokolsky T, Tucker CM, Chan LY, Boselli M, Dunham MJ, et al. Effects of Aneuploidy on Cellular Physiology and Cell Division in Haploid Yeast. Science. 2007;317: 916–924. 17702937
-
(2007)
Science
, vol.317
, pp. 916-924
-
-
Torres, E.M.1
Sokolsky, T.2
Tucker, C.M.3
Chan, L.Y.4
Boselli, M.5
Dunham, M.J.6
-
36
-
-
0031904230
-
Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment
-
Brown CJ, Todd KM, Rosenzweig RF, Multiple duplications of yeast hexose transport genes in response to selection in a glucose-limited environment. Mol Biol Evol. 1998;15: 931–942. 9718721
-
(1998)
Mol Biol Evol
, vol.15
, pp. 931-942
-
-
Brown, C.J.1
Todd, K.M.2
Rosenzweig, R.F.3
-
37
-
-
0037058930
-
Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae
-
Dunham MJ, Badrane H, Ferea T, Adams J, Brown PO, Rosenzweig F, et al. Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae. Proc Natl Acad Sci. 2002;99: 16144–16149. 12446845
-
(2002)
Proc Natl Acad Sci
, vol.99
, pp. 16144-16149
-
-
Dunham, M.J.1
Badrane, H.2
Ferea, T.3
Adams, J.4
Brown, P.O.5
Rosenzweig, F.6
-
38
-
-
77957343158
-
Genome-Wide Screen in Saccharomyces cerevisiae Identifies Vacuolar Protein Sorting, Autophagy, Biosynthetic, and tRNA Methylation Genes Involved in Life Span Regulation
-
Fabrizio P, Hoon S, Shamalnasab M, Galbani A, Wei M, Giaever G, et al. Genome-Wide Screen in Saccharomyces cerevisiae Identifies Vacuolar Protein Sorting, Autophagy, Biosynthetic, and tRNA Methylation Genes Involved in Life Span Regulation. PLoS Genet. 2010;6: e1001024. doi: 10.1371/journal.pgen.1001024 20657825
-
(2010)
PLoS Genet
, vol.6
, pp. e1001024
-
-
Fabrizio, P.1
Hoon, S.2
Shamalnasab, M.3
Galbani, A.4
Wei, M.5
Giaever, G.6
-
39
-
-
43049138051
-
Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease
-
Kraft C, Deplazes A, Sohrmann M, Peter M, Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease. Nat Cell Biol. 2008;10: 602–610. doi: 10.1038/ncb1723 18391941
-
(2008)
Nat Cell Biol
, vol.10
, pp. 602-610
-
-
Kraft, C.1
Deplazes, A.2
Sohrmann, M.3
Peter, M.4
-
40
-
-
77950487987
-
Mechanisms of cross-talk between the ubiquitin-proteasome and autophagy-lysosome systems
-
Korolchuk VI, Menzies FM, Rubinsztein DC, Mechanisms of cross-talk between the ubiquitin-proteasome and autophagy-lysosome systems. FEBS Lett. 2010;584: 1393–1398. doi: 10.1016/j.febslet.2009.12.047 20040365
-
(2010)
FEBS Lett
, vol.584
, pp. 1393-1398
-
-
Korolchuk, V.I.1
Menzies, F.M.2
Rubinsztein, D.C.3
-
41
-
-
84879727622
-
Reversion of a fungal genetic code alteration links proteome instability with genomic and phenotypic diversification
-
Bezerra AR, Simões J, Lee W, Rung J, Weil T, Gut IG, et al. Reversion of a fungal genetic code alteration links proteome instability with genomic and phenotypic diversification. Proc Natl Acad Sci. 2013;110: 11079–11084. doi: 10.1073/pnas.1302094110 23776239
-
(2013)
Proc Natl Acad Sci
, vol.110
, pp. 11079-11084
-
-
Bezerra, A.R.1
Simões, J.2
Lee, W.3
Rung, J.4
Weil, T.5
Gut, I.G.6
-
42
-
-
80054054260
-
The aneuploidy paradox: costs and benefits of an incorrect karyotype
-
Sheltzer JM, Amon A, The aneuploidy paradox: costs and benefits of an incorrect karyotype. Trends Genet. 2011;27: 446–453. doi: 10.1016/j.tig.2011.07.003 21872963
-
(2011)
Trends Genet
, vol.27
, pp. 446-453
-
-
Sheltzer, J.M.1
Amon, A.2
-
43
-
-
84866296846
-
Whole chromosome aneuploidy: Big mutations drive adaptation by phenotypic leap
-
Chen G, Rubinstein B, Li R, Whole chromosome aneuploidy: Big mutations drive adaptation by phenotypic leap. BioEssays. 2012;34: 893–900. doi: 10.1002/bies.201200069 22926916
-
(2012)
BioEssays
, vol.34
, pp. 893-900
-
-
Chen, G.1
Rubinstein, B.2
Li, R.3
-
44
-
-
84873314664
-
Gene Copy-Number Alterations: A Cost-Benefit Analysis
-
Tang Y-C, Amon A, Gene Copy-Number Alterations: A Cost-Benefit Analysis. Cell. 2013;152: 394–405. doi: 10.1016/j.cell.2012.11.043 23374337
-
(2013)
Cell
, vol.152
, pp. 394-405
-
-
Tang, Y.-C.1
Amon, A.2
-
45
-
-
73449107205
-
Acquisition of Aneuploidy Provides Increased Fitness during the Evolution of Antifungal Drug Resistance
-
Selmecki AM, Dulmage K, Cowen LE, Anderson JB, Berman J, Acquisition of Aneuploidy Provides Increased Fitness during the Evolution of Antifungal Drug Resistance. PLoS Genet. 2009;5: e1000705. doi: 10.1371/journal.pgen.1000705 19876375
-
(2009)
PLoS Genet
, vol.5
, pp. e1000705
-
-
Selmecki, A.M.1
Dulmage, K.2
Cowen, L.E.3
Anderson, J.B.4
Berman, J.5
-
46
-
-
56349088536
-
Aneuploidy Underlies Rapid Adaptive Evolution of Yeast Cells Deprived of a Conserved Cytokinesis Motor
-
Rancati G, Pavelka N, Fleharty B, Noll A, Trimble R, Walton K, et al. Aneuploidy Underlies Rapid Adaptive Evolution of Yeast Cells Deprived of a Conserved Cytokinesis Motor. Cell. 2008;135: 879–893. doi: 10.1016/j.cell.2008.09.039 19041751
-
(2008)
Cell
, vol.135
, pp. 879-893
-
-
Rancati, G.1
Pavelka, N.2
Fleharty, B.3
Noll, A.4
Trimble, R.5
Walton, K.6
-
47
-
-
84871375832
-
Chromosomal duplication is a transient evolutionary solution to stress
-
Yona AH, Manor YS, Herbst RH, Romano GH, Mitchell A, Kupiec M, et al. Chromosomal duplication is a transient evolutionary solution to stress. Proc Natl Acad Sci. 2012;109: 21010–21015. doi: 10.1073/pnas.1211150109 23197825
-
(2012)
Proc Natl Acad Sci
, vol.109
, pp. 21010-21015
-
-
Yona, A.H.1
Manor, Y.S.2
Herbst, R.H.3
Romano, G.H.4
Mitchell, A.5
Kupiec, M.6
-
48
-
-
0036141054
-
Chromatin assembly factor I and Hir proteins contribute to building functional kinetochores in S. cerevisiae
-
Sharp JA, Franco AA, Osley MA, Kaufman PD, Chromatin assembly factor I and Hir proteins contribute to building functional kinetochores in S. cerevisiae. Genes Dev. 2002;16: 85–100. 11782447
-
(2002)
Genes Dev
, vol.16
, pp. 85-100
-
-
Sharp, J.A.1
Franco, A.A.2
Osley, M.A.3
Kaufman, P.D.4
-
49
-
-
0031858054
-
Hir Proteins Are Required for Position-Dependent Gene Silencing in Saccharomyces cerevisiae in the Absence of Chromatin Assembly Factor I
-
Kaufman PD, Cohen JL, Osley MA, Hir Proteins Are Required for Position-Dependent Gene Silencing in Saccharomyces cerevisiae in the Absence of Chromatin Assembly Factor I. Mol Cell Biol. 1998;18: 4793–4806. 9671489
-
(1998)
Mol Cell Biol
, vol.18
, pp. 4793-4806
-
-
Kaufman, P.D.1
Cohen, J.L.2
Osley, M.A.3
-
50
-
-
79960652801
-
Molecular chaperones in protein folding and proteostasis
-
Hartl FU, Bracher A, Hayer-Hartl M, Molecular chaperones in protein folding and proteostasis. Nature. 2011;475: 324–332. doi: 10.1038/nature10317 21776078
-
(2011)
Nature
, vol.475
, pp. 324-332
-
-
Hartl, F.U.1
Bracher, A.2
Hayer-Hartl, M.3
-
51
-
-
84875461582
-
Diversity in the origins of proteostasis networks—a driver for protein function in evolution
-
Powers ET, Balch WE, Diversity in the origins of proteostasis networks—a driver for protein function in evolution. Nat Rev Mol Cell Biol. 2013;14: 237–248. doi: 10.1038/nrm3542 23463216
-
(2013)
Nat Rev Mol Cell Biol
, vol.14
, pp. 237-248
-
-
Powers, E.T.1
Balch, W.E.2
-
52
-
-
84906794886
-
Proteostasis impairment in protein-misfolding and -aggregation diseases
-
Hipp MS, Park S-H, Hartl FU, Proteostasis impairment in protein-misfolding and -aggregation diseases. Trends Cell Biol. 2014;24: 506–514. doi: 10.1016/j.tcb.2014.05.003 24946960
-
(2014)
Trends Cell Biol
, vol.24
, pp. 506-514
-
-
Hipp, M.S.1
Park, S.-H.2
Hartl, F.U.3
-
53
-
-
0036132470
-
Protein turnover plays a key role in aging
-
Ryazanov AG, Nefsky BS, Protein turnover plays a key role in aging. Mech Ageing Dev. 2002;123: 207–213. 11718813
-
(2002)
Mech Ageing Dev
, vol.123
, pp. 207-213
-
-
Ryazanov, A.G.1
Nefsky, B.S.2
-
54
-
-
84905014977
-
Protein mistranslation: friend or foe?
-
Ribas de Pouplana L, Santos MAS, Zhu J- H, Farabaugh PJ, Javid B, Protein mistranslation: friend or foe? Trends Biochem Sci. 2014;39: 355–362. doi: 10.1016/j.tibs.2014.06.002 25023410
-
(2014)
Trends Biochem Sci
, vol.39
, pp. 355-362
-
-
Ribas de Pouplana, L.1
Santos, M.A.S.2
Zhu J-, H.3
Farabaugh, P.J.4
Javid, B.5
-
55
-
-
1642513699
-
Driving change: the evolution of alternative genetic codes
-
Santos MAS, Moura G, Massey SE, Tuite MF, Driving change: the evolution of alternative genetic codes. Trends Genet. 2004;20: 95–102. 14746991
-
(2004)
Trends Genet
, vol.20
, pp. 95-102
-
-
Santos, M.A.S.1
Moura, G.2
Massey, S.E.3
Tuite, M.F.4
-
56
-
-
33645126396
-
Evolution of the genetic code in yeasts
-
Miranda I, Silva R, Santos MAS, Evolution of the genetic code in yeasts. Yeast. 2006;23: 203–213. 16498697
-
(2006)
Yeast
, vol.23
, pp. 203-213
-
-
Miranda, I.1
Silva, R.2
Santos, M.A.S.3
-
57
-
-
0028332057
-
Transfer RNA Mutation and the Malleability of the Genetic Code
-
Schultz DW, Yarus M, Transfer RNA Mutation and the Malleability of the Genetic Code. J Mol Biol. 1994;235: 1377–1380. 8107079
-
(1994)
J Mol Biol
, vol.235
, pp. 1377-1380
-
-
Schultz, D.W.1
Yarus, M.2
-
58
-
-
84922254329
-
-
Gietz RD, Xiao W, Yeast Transformation by the LiAc/SS Carrier DNA/PEG Method. In: Yeast Protocols. New York, NY: Springer New York; 2014. pp. 33–44. http://link.springer.com/10.1007/978-1-4939-0799-1_4
-
(2014)
Yeast Protocols
, pp. 33-44
-
-
Gietz, R.D.1
Xiao, W.2
-
59
-
-
84922862545
-
The Genomic Landscape of Compensatory Evolution
-
Szamecz B, Boross G, Kalapis D, Kovács K, Fekete G, Farkas Z, et al. The Genomic Landscape of Compensatory Evolution. PLoS Biol. 2014;12: e1001935. doi: 10.1371/journal.pbio.1001935 25157590
-
(2014)
PLoS Biol
, vol.12
, pp. e1001935
-
-
Szamecz, B.1
Boross, G.2
Kalapis, D.3
Kovács, K.4
Fekete, G.5
Farkas, Z.6
-
60
-
-
0026584278
-
Use of a dot blot hybridization method for identification of pure tRNA species on different membranes
-
Heitzler J, Maréchal-Drouard L, Dirheimer G, Keith G, Use of a dot blot hybridization method for identification of pure tRNA species on different membranes. Biochim Biophys Acta BBA—Gene Struct Expr. 1992;1129: 273–277.
-
(1992)
Biochim Biophys Acta BBA—Gene Struct Expr
, vol.1129
, pp. 273-277
-
-
Heitzler, J.1
Maréchal-Drouard, L.2
Dirheimer, G.3
Keith, G.4
-
62
-
-
0025362399
-
A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae
-
Schmitt ME, Brown TA, Trumpower BL, A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res. 1990;18: 3091–3092. 2190191
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 3091-3092
-
-
Schmitt, M.E.1
Brown, T.A.2
Trumpower, B.L.3
-
63
-
-
33747894577
-
-
Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V, Howe EA, Oliver AK, B et al. [9] TM4 Microarray Software Suite. In: Methods in Enzymology. Academic Press; 2006. pp. 134–193. http://www.sciencedirect.com/science/article/pii/S0076687906110095
-
(2006)
Methods in Enzymology
, pp. 134-193
-
-
Saeed, A.I.1
Bhagabati, N.K.2
Braisted, J.C.3
Liang, W.4
Sharov, V.5
Howe, E.A.6
Oliver, A.K.7
-
64
-
-
79958151996
-
BamTools: a C++ API and toolkit for analyzing and managing BAM files
-
Barnett DW, Garrison EK, Quinlan AR, Strömberg MP, Marth GT, BamTools: a C++ API and toolkit for analyzing and managing BAM files. Bioinformatics. 2011;27: 1691–1692. doi: 10.1093/bioinformatics/btr174 21493652
-
(2011)
Bioinformatics
, vol.27
, pp. 1691-1692
-
-
Barnett, D.W.1
Garrison, E.K.2
Quinlan, A.R.3
Strömberg, M.P.4
Marth, G.T.5
-
65
-
-
0031858914
-
SGD: Saccharomyces Genome Database
-
Cherry JM, Adler C, Ball C, Chervitz SA, Dwight SS, Hester ET, et al. SGD: Saccharomyces Genome Database. Nucleic Acids Res. 1998;26: 73–79. 9399804
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 73-79
-
-
Cherry, J.M.1
Adler, C.2
Ball, C.3
Chervitz, S.A.4
Dwight, S.S.5
Hester, E.T.6
-
66
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows–Wheeler transform
-
Li H, Durbin R, Fast and accurate long-read alignment with Burrows–Wheeler transform. Bioinformatics. 2010;26: 589–595. doi: 10.1093/bioinformatics/btp698 20080505
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
67
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009;25: 2078–2079. doi: 10.1093/bioinformatics/btp352 19505943
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
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