메뉴 건너뛰기




Volumn 5, Issue , 2015, Pages

Systematic unravelling of the biosynthesis of poly (L-diaminopropionic acid) in Streptomyces albulus PD-1

Author keywords

[No Author keywords available]

Indexed keywords

2,3-DIAMINOPROPIONIC ACID; BACTERIAL PROTEIN; BETA ALANINE; PEPTIDE SYNTHASE;

EID: 84949293503     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep17400     Document Type: Article
Times cited : (30)

References (43)
  • 1
    • 84893162705 scopus 로고    scopus 로고
    • NRPSs and amide ligases producing homopoly(amino acid)s and homooligo(amino acid)s
    • Hamano, Y., Arai, T., Ashiuchi, M. & Kino, K. NRPSs and amide ligases producing homopoly(amino acid)s and homooligo(amino acid)s. Nat. Prod. Rep. 30, 1087-1097 (2013).
    • (2013) Nat. Prod. Rep. , vol.30 , pp. 1087-1097
    • Hamano, Y.1    Arai, T.2    Ashiuchi, M.3    Kino, K.4
  • 2
    • 47849113687 scopus 로고    scopus 로고
    • Poly(L-diaminobutanoic acid), a novel poly(amino acid), coproduced with poly(e-L-lysine) by two strains of Streptomyces celluloflavus
    • Takehara, M., Saimura, M., Inaba, H. & Hirohara, H. Poly(L-diaminobutanoic acid), a novel poly(amino acid), coproduced with poly(e-L-lysine) by two strains of Streptomyces celluloflavus. FEMS Microbiol. Lett. 286, 110-117 (2008).
    • (2008) FEMS Microbiol. Lett. , vol.286 , pp. 110-117
    • Takehara, M.1    Saimura, M.2    Inaba, H.3    Hirohara, H.4
  • 3
    • 84892569154 scopus 로고    scopus 로고
    • Poly(l-diaminopropionic acid), a novel non-proteinic amino acid oligomer co-produced with poly(e-l-lysine) by Streptomyces albulus PD-1
    • Xia, J., Xu, H., Feng, X., Xu, Z. & Chi, B. Poly(l-diaminopropionic acid), a novel non-proteinic amino acid oligomer co-produced with poly(e-l-lysine) by Streptomyces albulus PD-1. Appl. Microbiol. Biot. 97, 7597-7605 (2013).
    • (2013) Appl. Microbiol. Biot. , vol.97 , pp. 7597-7605
    • Xia, J.1    Xu, H.2    Feng, X.3    Xu, Z.4    Chi, B.5
  • 4
    • 84920885390 scopus 로고    scopus 로고
    • Poly-glutamic acid: Production, properties and applications
    • Ogunleye, A. et al. Poly-glutamic acid: production, properties and applications. Microbiol. 161, 1-17 (2015).
    • (2015) Microbiol. , vol.161 , pp. 1-17
    • Ogunleye, A.1
  • 5
    • 0034946131 scopus 로고    scopus 로고
    • The production of poly-(glutamic acid) from microorganisms and its various applications
    • Shih, L. & Van, Y. T. The production of poly-(glutamic acid) from microorganisms and its various applications. Bioresour. Technol. 3, 207 225 (2001).
    • (2001) Bioresour. Technol. , vol.3 , pp. 207-225
    • Shih, L.1    Van, Y.T.2
  • 6
    • 84884721265 scopus 로고    scopus 로고
    • Panorama of poly-e-lysine
    • Bankar, S. B. & Singhal, R. S. Panorama of poly-e-lysine. RSC Adv. 23, 8586-8603 (2013).
    • (2013) RSC Adv. , vol.23 , pp. 8586-8603
    • Bankar, S.B.1    Singhal, R.S.2
  • 7
    • 84860919545 scopus 로고    scopus 로고
    • Review on production and medical applications of polylysine
    • Shukla, S. C., Singh, A., Pandey, A. K. & Mishra, A. Review on production and medical applications of polylysine. Biochem. Eng. J. 65, 70-81 (2012).
    • (2012) Biochem. Eng. J. , vol.65 , pp. 70-81
    • Shukla, S.C.1    Singh, A.2    Pandey, A.K.3    Mishra, A.4
  • 8
    • 84936936543 scopus 로고    scopus 로고
    • Economic process to co-produce poly(e-l-lysine) and poly(l-diaminopropionic acid) by a pH and dissolved oxygen control strategy
    • Xu, Z. et al. Economic process to co-produce poly(e-l-lysine) and poly(l-diaminopropionic acid) by a pH and dissolved oxygen control strategy. Bioresour. Technol. 187, 70-76 (2015).
    • (2015) Bioresour. Technol. , vol.187 , pp. 70-76
    • Xu, Z.1
  • 9
    • 0018288699 scopus 로고
    • Chemistry and biosynthesis of the poly (gamma-D-glutamyl) capsule in Bacillus licheniformis. Activation, racemization, and polymerization of glutamic acid by a membranous polyglutamyl synthetase complex
    • Gardner, J. M. & Troy, F. A. Chemistry and biosynthesis of the poly (gamma-D-glutamyl) capsule in Bacillus licheniformis. Activation, racemization, and polymerization of glutamic acid by a membranous polyglutamyl synthetase complex. J. Biol. Chem. 14, 6262-6269 (1979).
    • (1979) J. Biol. Chem. , vol.14 , pp. 6262-6269
    • Gardner, J.M.1    Troy, F.A.2
  • 10
    • 3242750776 scopus 로고    scopus 로고
    • Enzymatic synthesis of high-molecular-mass poly-Glutamate and regulation of its stereochemistry
    • Ashiuchi, M. et al. Enzymatic synthesis of high-molecular-mass poly-Glutamate and regulation of its stereochemistry. Appl. Environ. Microb. 70, 4249-4255 (2004).
    • (2004) Appl. Environ. Microb. , vol.70 , pp. 4249-4255
    • Ashiuchi, M.1
  • 11
    • 56249145109 scopus 로고    scopus 로고
    • E-Poly-L-lysine dispersity is controlled by a highly unusual nonribosomal peptide synthetase
    • Yamanaka, K., Maruyama, C., Takagi, H. & Hamano, Y. e-Poly-L-lysine dispersity is controlled by a highly unusual nonribosomal peptide synthetase. Nat. Chem. Biol. 4, 766-772 (2008).
    • (2008) Nat. Chem. Biol. , vol.4 , pp. 766-772
    • Yamanaka, K.1    Maruyama, C.2    Takagi, H.3    Hamano, Y.4
  • 13
    • 84895453461 scopus 로고    scopus 로고
    • Systems biology and biotechnology of Streptomyces species for the production of secondary metabolites
    • Hwang, K., Kim, H. U., Charusanti, P., Palsson, B. Ø. & Lee, S. Y. Systems biology and biotechnology of Streptomyces species for the production of secondary metabolites. Biotechnol. Adv. 32, 255-268 (2014).
    • (2014) Biotechnol. Adv. , vol.32 , pp. 255-268
    • Hwang, K.1    Kim, H.U.2    Charusanti, P.3    Palsson, B.Ø.4    Lee, S.Y.5
  • 14
    • 68149179629 scopus 로고    scopus 로고
    • New natural product biosynthetic chemistry discovered by genome mining
    • Corre, C. & Challis, G. L. New natural product biosynthetic chemistry discovered by genome mining. Nat. Prod. Rep. 26, 977-986 (2009).
    • (2009) Nat. Prod. Rep. , vol.26 , pp. 977-986
    • Corre, C.1    Challis, G.L.2
  • 15
    • 48449098635 scopus 로고    scopus 로고
    • Mining microbial genomes for new natural products and biosynthetic pathways
    • Challis, G. L. Mining microbial genomes for new natural products and biosynthetic pathways. Microbiol. 154 1555-1569 (2008).
    • (2008) Microbiol. , vol.154 , pp. 1555-1569
    • Challis, G.L.1
  • 16
    • 84860233135 scopus 로고    scopus 로고
    • Genomic analysis of Pseudomonas putida: Genes in a genome island are crucial for nicotine degradation
    • Tang, H. et al. Genomic analysis of Pseudomonas putida: genes in a genome island are crucial for nicotine degradation. Sci. Rep. 2, 377 (2012).
    • (2012) Sci. Rep. , vol.2 , pp. 377
    • Tang, H.1
  • 17
    • 84899542480 scopus 로고    scopus 로고
    • Genomic analysis of thermophilic Bacillus coagulans strains: Efficient producers for platform bio-chemicals
    • Su, F. & Xu, P. Genomic analysis of thermophilic Bacillus coagulans strains: efficient producers for platform bio-chemicals. Sci. Rep. 4, 3926 (2014).
    • (2014) Sci. Rep. , vol.4 , pp. 3926
    • Su, F.1    Xu, P.2
  • 18
    • 84925002966 scopus 로고    scopus 로고
    • Identification of genetic variations associated with epsilon-poly-lysine biosynthesis in Streptomyces albulus ZPM by genome sequencing
    • Wang, L., Gao, C., Tang, N., Hu, S. & Wu, Q. Identification of genetic variations associated with epsilon-poly-lysine biosynthesis in Streptomyces albulus ZPM by genome sequencing. Sci. Rep. 5, 9201 (2015).
    • (2015) Sci. Rep. , vol.5 , pp. 9201
    • Wang, L.1    Gao, C.2    Tang, N.3    Hu, S.4    Wu, Q.5
  • 19
    • 84998817201 scopus 로고    scopus 로고
    • Genome sequence of Streptomyces albulus PD-1, a Productive Strain for epsilon-Poly-L-Lysine and poly-Ldiaminopropionic acid
    • Xu, Z. et al. Genome sequence of Streptomyces albulus PD-1, a Productive Strain for epsilon-Poly-L-Lysine and poly-Ldiaminopropionic acid. Genome Announc. 2, e00297-14 (2014).
    • (2014) Genome Announc. , vol.2 , pp. e00297-e00314
    • Xu, Z.1
  • 20
    • 84893905739 scopus 로고    scopus 로고
    • Cloning of e-poly-L-lysine ( e-PL) synthetase gene from a newly isolated e-PL-producing Streptomyces albulus NK660 and its heterologous expression in Streptomyces lividans
    • Geng, W. et al. Cloning of e-poly-L-lysine ( e-PL) synthetase gene from a newly isolated e-PL-producing Streptomyces albulus NK660 and its heterologous expression in Streptomyces lividans. Microb. Biotechol. 2, 155-164 (2014).
    • (2014) Microb. Biotechol. , vol.2 , pp. 155-164
    • Geng, W.1
  • 21
    • 79957609698 scopus 로고    scopus 로고
    • Development of a recombinant e-poly-L-lysine synthetase expression system to perform mutational analysis
    • Yamanaka, K. et al. Development of a recombinant e-poly-L-lysine synthetase expression system to perform mutational analysis. J Biosci. Bioeng. 111, 646-649 (2011).
    • (2011) J Biosci. Bioeng. , vol.111 , pp. 646-649
    • Yamanaka, K.1
  • 22
    • 64249155091 scopus 로고    scopus 로고
    • Nonribosomal peptide synthetases: Mechanistic and structural aspects of essential domains
    • Marahiel, M. A. & Essen, L. O. Nonribosomal peptide synthetases: mechanistic and structural aspects of essential domains. Method Enzymol. 458, 337-351(2009).
    • (2009) Method Enzymol. , vol.458 , pp. 337-351
    • Marahiel, M.A.1    Essen, L.O.2
  • 23
    • 9244234513 scopus 로고    scopus 로고
    • Biosynthesis of nonribosomal peptides 1
    • Finking, R. & Marahiel, M. A. Biosynthesis of nonribosomal peptides 1. Annu. Rev. Microbiol. 58, 453-488 (2004).
    • (2004) Annu. Rev. Microbiol. , vol.58 , pp. 453-488
    • Finking, R.1    Marahiel, M.A.2
  • 24
    • 84871826475 scopus 로고    scopus 로고
    • Structure and noncanonical chemistry of nonribosomal peptide biosynthetic machinery
    • Condurso, H. L. & Bruner, S. D. Structure and noncanonical chemistry of nonribosomal peptide biosynthetic machinery. Nat. Prod. Rep. 29, 1099-1110 (2012).
    • (2012) Nat. Prod. Rep. , vol.29 , pp. 1099-1110
    • Condurso, H.L.1    Bruner, S.D.2
  • 25
    • 84876321660 scopus 로고    scopus 로고
    • Mutational analysis of the three tandem domains of e-poly-l-lysine synthetase catalyzing the l-lysine polymerization reaction
    • Kito, N. et al. Mutational analysis of the three tandem domains of e-poly-l-lysine synthetase catalyzing the l-lysine polymerization reaction. J Biosci. Bioeng. 115, 523-526 (2013).
    • (2013) J Biosci. Bioeng. , vol.115 , pp. 523-526
    • Kito, N.1
  • 26
    • 0033179468 scopus 로고    scopus 로고
    • The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases
    • Stachelhaus, T., Mootz, H. D. & Marahiel, M. A. The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases. Chem. Biol. 8, 493-505 (1999).
    • (1999) Chem. Biol. , vol.8 , pp. 493-505
    • Stachelhaus, T.1    Mootz, H.D.2    Marahiel, M.A.3
  • 27
    • 26944502019 scopus 로고    scopus 로고
    • Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs)
    • Rausch, C. Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs). Nucleic Acids Res. 33, 5799-5808 (2005).
    • (2005) Nucleic Acids Res. , vol.33 , pp. 5799-5808
    • Rausch, C.1
  • 28
    • 0027376154 scopus 로고
    • Biosynthesis of capreomycin.2 incorporation of L-serine, L-alanine, and L-2,3-diaminopropionic acid
    • Wang, M. & Gould, S. J. Biosynthesis of capreomycin.2
    • (1993) J. Org. Chem. , vol.19 , pp. 5176-5180
    • Wang, M.1    Gould, S.J.2
  • 29
    • 0016390557 scopus 로고
    • Biosynthesis of viomycin. I. Origin of a β-diaminopropionic acid and serine
    • Carter, J. H. et al. Biosynthesis of viomycin. I. Origin of a β-diaminopropionic acid and serine. Biochem. 6, 1221-1227 (1974).
    • (1974) Biochem. , vol.6 , pp. 1221-1227
    • Carter, J.H.1
  • 30
    • 34447527903 scopus 로고    scopus 로고
    • Identification of the biosynthetic gene cluster and an additional gene for resistance to the antituberculosis drug capreomycin
    • Felnagle, E. A., Rondon, M. R., Berti, A. D., Crosby, H. A. & Thomas, M. G. Identification of the biosynthetic gene cluster and an additional gene for resistance to the antituberculosis drug capreomycin. Appl. Environ. Microb. 73, 4162-4170 (2007).
    • (2007) Appl. Environ. Microb. , vol.73 , pp. 4162-4170
    • Felnagle, E.A.1    Rondon, M.R.2    Berti, A.D.3    Crosby, H.A.4    Thomas, M.G.5
  • 31
    • 49649095578 scopus 로고    scopus 로고
    • L-2,3-diaminopropionate: One of the building blocks for the biosynthesis of zwittermicin A in Bacillus thuringiensis subsp. Kurstaki strain YBT-1520
    • Zhao, C., Song, C., Luo, Y., Yu, Z. & Sun, M. L-2,3-diaminopropionate: one of the building blocks for the biosynthesis of zwittermicin A in Bacillus thuringiensis subsp. kurstaki strain YBT-1520. FEBS Lett. 582, 3125-3131 (2008).
    • (2008) FEBS Lett. , vol.582 , pp. 3125-3131
    • Zhao, C.1    Song, C.2    Luo, Y.3    Yu, Z.4    Sun, M.5
  • 32
    • 70350430681 scopus 로고    scopus 로고
    • Molecular characterization of staphyloferrin B biosynthesis in Staphylococcus aureus
    • Cheung, J., Beasley, F. C., Liu, S., Lajoie, G. A. & Heinrichs, D. E. Molecular characterization of staphyloferrin B biosynthesis in Staphylococcus aureus. Mol. Microbiol. 74, 594-608 (2009).
    • (2009) Mol. Microbiol. , vol.74 , pp. 594-608
    • Cheung, J.1    Beasley, F.C.2    Liu, S.3    Lajoie, G.A.4    Heinrichs, D.E.5
  • 33
    • 80052595178 scopus 로고    scopus 로고
    • Mutation of L-2,3-diaminopropionic acid synthase genes blocks staphyloferrin B synthesis in Staphylococcus aureus
    • Beasley, F. C., Cheung, J. & Heinrichs, D. E. Mutation of L-2,3-diaminopropionic acid synthase genes blocks staphyloferrin B synthesis in Staphylococcus aureus. BMC Microbiol. 11, 199 (2011).
    • (2011) BMC Microbiol. , vol.11 , pp. 199
    • Beasley, F.C.1    Cheung, J.2    Heinrichs, D.E.3
  • 34
    • 0041422181 scopus 로고    scopus 로고
    • Deciphering tuberactinomycin biosynthesis: Isolation, sequencing, and annotation of the viomycin biosynthetic gene cluster
    • Thomas, M. G., Chan, Y. A. & Ozanick, S. G. Deciphering tuberactinomycin biosynthesis: isolation, sequencing, and annotation of the viomycin biosynthetic gene cluster. Antimicrob. Agents Ch. 9, 2823-2830 (2003).
    • (2003) Antimicrob. Agents Ch. , vol.9 , pp. 2823-2830
    • Thomas, M.G.1    Chan, Y.A.2    Ozanick, S.G.3
  • 35
    • 84897097263 scopus 로고    scopus 로고
    • Synthesis of L-2,3-Diaminopropionic Acid, a Siderophore and Antibiotic Precursor
    • Kobylarz, M. J. et al. Synthesis of L-2,3-Diaminopropionic Acid, a Siderophore and Antibiotic Precursor. Chem. Boil. 21, 379-388 (2014).
    • (2014) Chem. Boil. , vol.21 , pp. 379-388
    • Kobylarz, M.J.1
  • 36
    • 84924811934 scopus 로고    scopus 로고
    • The regulatory effect of citric acid on the co-production of poly(e-lysine) and poly (L-diaminopropionic acid) in Streptomyces albulus PD-1
    • Xia, J., Xu, Z., Xu, H., Feng, X. & Bo, F. The regulatory effect of citric acid on the co-production of poly(e-lysine) and poly (L-diaminopropionic acid) in Streptomyces albulus PD-1. Bioproc. Biosyst Eng. 37, 2095-2103 (2014).
    • (2014) Bioproc. Biosyst Eng. , vol.37 , pp. 2095-2103
    • Xia, J.1    Xu, Z.2    Xu, H.3    Feng, X.4    Bo, F.5
  • 37
    • 84912016411 scopus 로고    scopus 로고
    • Effects of oxygen-vectors on the synthesis of e-poly-lysine and the metabolic characterization of Streptomyces albulus PD-1
    • Xu, Z. et al. Effects of oxygen-vectors on the synthesis of e-poly-lysine and the metabolic characterization of Streptomyces albulus PD-1. Biochem. Eng. J. 94, 58-64 (2015).
    • (2015) Biochem. Eng. J. , vol.94 , pp. 58-64
    • Xu, Z.1
  • 38
    • 84901020787 scopus 로고    scopus 로고
    • Genomic insights into high exopolysaccharide-producing dairy starter bacterium Streptococcus thermophilus ASCC 1275
    • Wu, Q., Tun, H. M., Leung, F. C. & Shah, N. P. Genomic insights into high exopolysaccharide-producing dairy starter bacterium Streptococcus thermophilus ASCC 1275. Sci. Rep. 4, 1275(2014).
    • (2014) Sci. Rep. , vol.4 , pp. 1275
    • Wu, Q.1    Tun, H.M.2    Leung, F.C.3    Shah, N.P.4
  • 39
    • 84926298894 scopus 로고    scopus 로고
    • Directed natural product biosynthesis gene cluster capture and expression in the model bacterium Bacillus subtilis
    • Li, Y. et al. Directed natural product biosynthesis gene cluster capture and expression in the model bacterium Bacillus subtilis. Sci. Rep. 5, 9383 (2015).
    • (2015) Sci. Rep. , vol.5 , pp. 9383
    • Li, Y.1
  • 40
    • 84941042486 scopus 로고    scopus 로고
    • CDD: NCBI's conserved domain database
    • Marchler-Bauer, A. et al. CDD: NCBI's conserved domain database. Nucleic Acids Res. 43, D222 (2014).
    • (2014) Nucleic Acids Res. , vol.43 , pp. D222
    • Marchler-Bauer, A.1
  • 41
    • 79959936207 scopus 로고    scopus 로고
    • NRPSpredictor2 - A web server for predicting NRPS adenylation domain specificity
    • Rottig, M. et al. NRPSpredictor2 - a web server for predicting NRPS adenylation domain specificity. Nucleic Acids Res. 39, W362 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. W362
    • Rottig, M.1
  • 42
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden markov model: Application to complete genomes
    • Krogh, A., Larsson, B., von Heijne, G. & Sonnhammer, E. L. L. Predicting transmembrane protein topology with a hidden markov model: application to complete genomes. J. Mol. Biol. 305, 567-580 (2001).
    • (2001) J. Mol. Biol. , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.