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Volumn 5, Issue , 2015, Pages

Identification of genetic variations associated with epsilon-poly-lysine biosynthesis in Streptomyces albulus ZPM by genome sequencing

Author keywords

[No Author keywords available]

Indexed keywords

POLYLYSINE; TRANSCRIPTION FACTOR;

EID: 84925002966     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep09201     Document Type: Article
Times cited : (27)

References (36)
  • 1
    • 84865683314 scopus 로고    scopus 로고
    • Thoughts and facts about antibiotics: Where we are now and where we are heading
    • Berdy, J. Thoughts and facts about antibiotics: where we are now and where we are heading. J Antibiot (Tokyo) 65, 385-395 (2012).
    • (2012) J Antibiot (Tokyo) , vol.65 , pp. 385-395
    • Berdy, J.1
  • 2
    • 84874850153 scopus 로고    scopus 로고
    • Molecular regulation of antibiotic biosynthesis in streptomyces
    • Liu, G., Chater, K. F., Chandra, G., Niu, G. & Tan, H. Molecular regulation of antibiotic biosynthesis in streptomyces. Microbiol Mol Biol Rev 77, 112-143 (2013).
    • (2013) Microbiol Mol Biol Rev , vol.77 , pp. 112-143
    • Liu, G.1    Chater, K.F.2    Chandra, G.3    Niu, G.4    Tan, H.5
  • 3
    • 0037898156 scopus 로고    scopus 로고
    • Epsilon-Poly-L-lysine: Microbial production, biodegradation and application potential
    • Yoshida, T. & Nagasawa, T. epsilon-Poly-L-lysine: microbial production, biodegradation and application potential. Appl Microbiol Biotechnol 62, 21-26 (2003).
    • (2003) Appl Microbiol Biotechnol , vol.62 , pp. 21-26
    • Yoshida, T.1    Nagasawa, T.2
  • 4
    • 0017652474 scopus 로고
    • Polylysine produced by streptomyces
    • Shima, S. & Sakai, H. Polylysine Produced by Streptomyces. Agric Biol Chem 41, 1807-1809 (1977).
    • (1977) Agric Biol Chem , vol.41 , pp. 1807-1809
    • Shima, S.1    Sakai, H.2
  • 6
    • 33747107535 scopus 로고    scopus 로고
    • Biological function of the pld gene product that degrades epsilon-poly-L-lysine in Streptomyces albulus
    • Hamano, Y. et al. Biological function of the pld gene product that degrades epsilon-poly-L-lysine in Streptomyces albulus. Appl Microbiol Biotechnol 72, 173-181 (2006).
    • (2006) Appl Microbiol Biotechnol , vol.72 , pp. 173-181
    • Hamano, Y.1
  • 7
    • 79960821879 scopus 로고    scopus 로고
    • Occurrence, biosynthesis, biodegradation, and industrial and medical applications of a naturally occurring epsilon-poly-L-lysine
    • Hamano, Y.Occurrence, biosynthesis, biodegradation, and industrial and medical applications of a naturally occurring epsilon-poly-L-lysine. Biosci Biotechnol Biochem 75, 1226-1233 (2011).
    • (2011) Biosci Biotechnol Biochem , vol.75 , pp. 1226-1233
    • Hamano, Y.1
  • 8
    • 79955981297 scopus 로고    scopus 로고
    • Isolation and characterization of a novel epsilon-poly-L-lysine producing strain: Streptomyces griseofuscus
    • Li, S. et al. Isolation and characterization of a novel epsilon-poly-L-lysine producing strain: Streptomyces griseofuscus. J Ind Microbiol Biotechnol 38, 557-563 (2011).
    • (2011) J Ind Microbiol Biotechnol , vol.38 , pp. 557-563
    • Li, S.1
  • 9
    • 78650706311 scopus 로고    scopus 로고
    • Optimization of medium for enhancement of epsilon-poly-L-lysine production by Streptomyces sp. M-Z18 with glycerol as carbon source
    • Chen, X. et al.Optimization of medium for enhancement of epsilon-poly-L-lysine production by Streptomyces sp. M-Z18 with glycerol as carbon source. Bioresour Technol 102, 1727-1732 (2011).
    • (2011) Bioresour Technol , vol.102 , pp. 1727-1732
    • Chen, X.1
  • 10
    • 79960154715 scopus 로고    scopus 로고
    • Production of epsilon-poly-L-lysine by Streptomyces sp using resin-based, in situ product removal
    • Liu, S. R.,Wu, Q. P., Zhang, J. M. &Mo, S. P. Production of epsilon-poly-L-lysine by Streptomyces sp using resin-based, in situ product removal. Biotechnol Lett 33, 1581-1585 (2011).
    • (2011) Biotechnol Lett , vol.33 , pp. 1581-1585
    • Liu, S.R.1    Wu, Q.P.2    Zhang, J.M.3    Mo, S.P.4
  • 11
    • 39049177122 scopus 로고    scopus 로고
    • Production of epsilon-poly-L-lysine by newly isolated Kitasatospora sp. PL6-3
    • Ouyang, J. et al. Production of epsilon-poly-L-lysine by newly isolated Kitasatospora sp. PL6-3. Biotechnol J 1, 1459-1463 (2006).
    • (2006) Biotechnol J , vol.1 , pp. 1459-1463
    • Ouyang, J.1
  • 12
    • 56249145109 scopus 로고    scopus 로고
    • Epsilon-Poly-L-lysine dispersity is controlled by a highly unusual nonribosomal peptide synthetase
    • Yamanaka, K., Maruyama, C., Takagi, H. & Hamano, Y. epsilon-Poly-L-lysine dispersity is controlled by a highly unusual nonribosomal peptide synthetase. Nat Chem Biol 4, 766-772 (2008).
    • (2008) Nat Chem Biol , vol.4 , pp. 766-772
    • Yamanaka, K.1    Maruyama, C.2    Takagi, H.3    Hamano, Y.4
  • 13
    • 77956570960 scopus 로고    scopus 로고
    • Mechanism of epsilon-Poly-L-Lysine Production and Accumulation Revealed by Identification and Analysis of an epsilon-Poly-LLysine-Degrading Enzyme
    • Yamanaka, K. et al. Mechanism of epsilon-Poly-L-Lysine Production and Accumulation Revealed by Identification and Analysis of an epsilon-Poly-LLysine-Degrading Enzyme. Appl Environ Microbiol 76, 5669-5675 (2010).
    • (2010) Appl Environ Microbiol , vol.76 , pp. 5669-5675
    • Yamanaka, K.1
  • 14
    • 0035108486 scopus 로고    scopus 로고
    • Enhancement of epsilonpolylysine production by Streptomyces albulus strain 410 using pH control
    • Kahar, P., Iwata, T., Hiraki, J., Park, E. Y. & Okabe, M. Enhancement of epsilonpolylysine production by Streptomyces albulus strain 410 using pH control. J Biosci Bioeng 91, 190-194 (2001).
    • (2001) J Biosci Bioeng , vol.91 , pp. 190-194
    • Kahar, P.1    Iwata, T.2    Hiraki, J.3    Park, E.Y.4    Okabe, M.5
  • 15
    • 0036300749 scopus 로고    scopus 로고
    • Distribution of microbes producing antimicrobial epsilon-poly-L-lysine polymers in soil microflora determined by a novel method
    • Nishikawa, M. & Ogawa, K. Distribution of microbes producing antimicrobial epsilon-poly-L-lysine polymers in soil microflora determined by a novel method. Appl Environ Microbiol 68, 3575-3581 (2002).
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3575-3581
    • Nishikawa, M.1    Ogawa, K.2
  • 16
    • 44349169524 scopus 로고    scopus 로고
    • Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350
    • Ohnishi, Y. et al. Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350. J Bacteriol 190, 4050-4060 (2008).
    • (2008) J Bacteriol , vol.190 , pp. 4050-4060
    • Ohnishi, Y.1
  • 17
    • 0037046560 scopus 로고    scopus 로고
    • Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)
    • Bentley, S. D. et al. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417, 141-147 (2002).
    • (2002) Nature , vol.417 , pp. 141-147
    • Bentley, S.D.1
  • 18
    • 0038561132 scopus 로고    scopus 로고
    • Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis
    • Ikeda, H. et al. Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis. Nat Biotechnol 21, 526-531 (2003).
    • (2003) Nat Biotechnol , vol.21 , pp. 526-531
    • Ikeda, H.1
  • 19
    • 59149105985 scopus 로고    scopus 로고
    • Acidic pH shock induces the expressions of a wide range of stressresponse genes
    • Kim, Y. J. et al. Acidic pH shock induces the expressions of a wide range of stressresponse genes. BMC Genomics 9, 604 (2008).
    • (2008) BMC Genomics , vol.9 , pp. 604
    • Kim, Y.J.1
  • 20
    • 84999018479 scopus 로고    scopus 로고
    • Draft Genome Sequence of Streptomyces albulus Strain CCRC 11814, an Epsilon-Poly-L-Lysine-Producing Actinomycete
    • Dodd, A., Swanevelder, D., Featherston, J.&Rumbold, K. Draft Genome Sequence of Streptomyces albulus Strain CCRC 11814, an Epsilon-Poly-L-Lysine-Producing Actinomycete. Genome Announc 1, e00696-13 (2013).
    • (2013) Genome Announc , vol.1 , pp. e00696-e00713
    • Dodd, A.1    Swanevelder, D.2    Featherston, J.3    Rumbold, K.4
  • 21
    • 84998817201 scopus 로고    scopus 로고
    • Genome Sequence of Streptomyces albulus PD-1, a Productive Strain for Epsilon-Poly-L-Lysine and Poly-L-Diaminopropionic Acid
    • Xu, Z. et al. Genome Sequence of Streptomyces albulus PD-1, a Productive Strain for Epsilon-Poly-L-Lysine and Poly-L-Diaminopropionic Acid. Genome Announc 2, e00297-14 (2014).
    • (2014) Genome Announc , vol.2 , pp. e00297-e00314
    • Xu, Z.1
  • 22
    • 33845442201 scopus 로고    scopus 로고
    • Engineering yeast transcription machinery for improved ethanol tolerance and production
    • Alper, H., Moxley, J., Nevoigt, E., Fink, G. R. & Stephanopoulos, G. Engineering yeast transcription machinery for improved ethanol tolerance and production. Science 314, 1565-1568 (2006).
    • (2006) Science , vol.314 , pp. 1565-1568
    • Alper, H.1    Moxley, J.2    Nevoigt, E.3    Fink, G.R.4    Stephanopoulos, G.5
  • 23
    • 84907510835 scopus 로고    scopus 로고
    • Improving industrial yeast strains: Exploiting natural and artificial diversity
    • Steensels, J. et al. Improving industrial yeast strains: exploiting natural and artificial diversity. FEMS Microbiol Rev 38, 947-995 (2014).
    • (2014) FEMS Microbiol Rev , vol.38 , pp. 947-995
    • Steensels, J.1
  • 24
    • 84942887758 scopus 로고    scopus 로고
    • SOAPdenovo2: An empirically improved memory-efficient shortread de novo assembler
    • Luo, R. et al. SOAPdenovo2: an empirically improved memory-efficient shortread de novo assembler. Gigascience 1, 18 (2012).
    • (2012) Gigascience , vol.1 , pp. 18
    • Luo, R.1
  • 25
    • 84862591603 scopus 로고    scopus 로고
    • Toward almost closed genomes with GapFiller
    • Boetzer, M. & Pirovano, W. Toward almost closed genomes with GapFiller. Genome Biol 13, R56 (2012).
    • (2012) Genome Biol , vol.13 , pp. R56
    • Boetzer, M.1    Pirovano, W.2
  • 26
    • 34147132825 scopus 로고    scopus 로고
    • Identifying bacterial genes and endosymbiontDNAwith Glimmer
    • Delcher, A. L., Bratke, K. A., Powers, E. C. & Salzberg, S. L. Identifying bacterial genes and endosymbiontDNAwith Glimmer. Bioinformatics 23, 673-679 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 673-679
    • Delcher, A.L.1    Bratke, K.A.2    Powers, E.C.3    Salzberg, S.L.4
  • 27
    • 77952299957 scopus 로고    scopus 로고
    • Prodigal: Prokaryotic gene recognition and translation initiation site identification
    • Hyatt, D. et al. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11, 119 (2010).
    • (2010) BMC Bioinformatics , vol.11 , pp. 119
    • Hyatt, D.1
  • 28
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa, A. et al. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21, 3674-3676 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1
  • 29
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M. & Eddy, S. R. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucl Acids Res 25, 955-964 (1997).
    • (1997) Nucl Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 30
    • 34250665888 scopus 로고    scopus 로고
    • RNAmmer: Consistent and rapid annotation of ribosomal RNA genes
    • Lagesen, K. et al. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucl Acids Res 35, 3100-3108 (2007).
    • (2007) Nucl Acids Res , vol.35 , pp. 3100-3108
    • Lagesen, K.1
  • 31
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol 10, R25 (2009).
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 32
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 33
    • 84863229597 scopus 로고    scopus 로고
    • VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • Koboldt, D. C. et al. VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res 22, 568-576 (2012).
    • (2012) Genome Res , vol.22 , pp. 568-576
    • Koboldt, D.C.1
  • 34
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
    • Wang, K., Li, M. Y. & Hakonarson, H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucl Acids Res 38, e164 (2010).
    • (2010) Nucl Acids Res , vol.38 , pp. e164
    • Wang, K.1    Li, M.Y.2    Hakonarson, H.3
  • 35
    • 84860467728 scopus 로고    scopus 로고
    • Characterization of a Novel ArsR-Like Regulator Encoded by Rv2034 in Mycobacterium tuberculosis
    • Gao, C. H., Yang, M. &He, Z. G. Characterization of a Novel ArsR-Like Regulator Encoded by Rv2034 in Mycobacterium tuberculosis. Plos One 7, e36255 (2012).
    • (2012) Plos One , vol.7
    • Gao, C.H.1    Yang, M.2    He, Z.G.3
  • 36
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford, M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254 (1976).
    • (1976) Anal Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1


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