-
1
-
-
0036682224
-
PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database
-
Ashelford KE, Weightman AJ, Fry JC. PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database. Nucleic Acids Res 2002;30: 3481-9.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3481-3489
-
-
Ashelford, K.E.1
Weightman, A.J.2
Fry, J.C.3
-
2
-
-
0028953835
-
The evolutionary relationship of biphenyl dioxygenase from Gram-positive Rhodococcus globerulus P6 to multicomponent dioxygenases from Gramnegative bacteria
-
Asturias JA, Diaz E, Timmis KN. The evolutionary relationship of biphenyl dioxygenase from Gram-positive Rhodococcus globerulus P6 to multicomponent dioxygenases from Gramnegative bacteria. Gene 1995;156:11-8.
-
(1995)
Gene
, vol.156
, pp. 11-18
-
-
Asturias, J.A.1
Diaz, E.2
Timmis, K.N.3
-
3
-
-
0037641131
-
Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR
-
Baldwin BR, Nakatsu CH, Nies L. Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR. Appl Environ Microb 2003;69:3350-8.
-
(2003)
Appl Environ Microb
, vol.69
, pp. 3350-3358
-
-
Baldwin, B.R.1
Nakatsu, C.H.2
Nies, L.3
-
4
-
-
21344459064
-
Bioremediation of polycyclic aromatic hydrocarbons: current knowledge and future directions
-
Bamforth SM, Singleton I. Bioremediation of polycyclic aromatic hydrocarbons: current knowledge and future directions. J Chem Technol Biot 2005;80:723-36.
-
(2005)
J Chem Technol Biot
, vol.80
, pp. 723-736
-
-
Bamforth, S.M.1
Singleton, I.2
-
5
-
-
0002557598
-
Phthalate dioxygenase reductase and related flavin-iron-sulfur containing electron transferases
-
Batie CJ, Ballou DP, Correll CC. Phthalate dioxygenase reductase and related flavin-iron-sulfur containing electron transferases. Chem Biochem Flavoenzymes 1991;3:543-56.
-
(1991)
Chem Biochem Flavoenzymes
, vol.3
, pp. 543-556
-
-
Batie, C.J.1
Ballou, D.P.2
Correll, C.C.3
-
6
-
-
79954550877
-
Mechanisms of chemical carcinogenicity and mutagenicity: a review with implications for predictive toxicology
-
Benigni R, Bossa C. Mechanisms of chemical carcinogenicity and mutagenicity: a review with implications for predictive toxicology. Chem Rev 2011;111:2507-36.
-
(2011)
Chem Rev
, vol.111
, pp. 2507-2536
-
-
Benigni, R.1
Bossa, C.2
-
8
-
-
0031031301
-
Metabolism of Naphthalene, 1-Naphthol, Indene, and Indole by Rhodococcus s
-
Boyd C, Larkin MJ, Reid KA, et al. Metabolism of Naphthalene, 1-Naphthol, Indene, and Indole by Rhodococcus sp. Strain NCIMB 12038. Appl Environ Microbiol 1997;63:151-5.
-
(1997)
Strain NCIMB 12038. Appl Environ Microbiol
, vol.63
, pp. 151-155
-
-
Boyd, C.1
Larkin, M.J.2
Reid, K.A.3
-
9
-
-
0038771927
-
Molecular characterization of dioxygenases from polycyclic aromatic hydrocarbondegrading Mycobacterium spp
-
Brezna B, Khan AA, Cerniglia CE. Molecular characterization of dioxygenases from polycyclic aromatic hydrocarbondegrading Mycobacterium spp. FEMS Microbiol Lett 2003;223:177-83.
-
(2003)
FEMS Microbiol Lett
, vol.223
, pp. 177-183
-
-
Brezna, B.1
Khan, A.A.2
Cerniglia, C.E.3
-
10
-
-
64149097786
-
The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments
-
Bustin SA, Benes V, Garson JA, et al. The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 2009;55:611-22.
-
(2009)
Clin Chem
, vol.55
, pp. 611-622
-
-
Bustin, S.A.1
Benes, V.2
Garson, J.A.3
-
11
-
-
70349410312
-
Influence of vegetation on the in situ bacterial community and polycyclic aromatic hydrocarbon (PAH) degraders in aged PAHcontaminated or thermal-desorption-treated soil
-
Cebron A, Beguiristain T, Faure P, et al. Influence of vegetation on the in situ bacterial community and polycyclic aromatic hydrocarbon (PAH) degraders in aged PAHcontaminated or thermal-desorption-treated soil. Appl Environ Microb 2009;75:6322-30.
-
(2009)
Appl Environ Microb
, vol.75
, pp. 6230-6322
-
-
Cebron, A.1
Beguiristain, T.2
Faure, P.3
-
12
-
-
42249095068
-
Real-Time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHD alpha) genes from Gram positive and Gram negative bacteria in soil and sediment samples
-
Cebron A, Norini MP, Beguiristain T, et al. Real-Time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHD alpha) genes from Gram positive and Gram negative bacteria in soil and sediment samples. J Microbiol Methods 2008;73:148-59.
-
(2008)
J Microbiol Methods
, vol.73
, pp. 148-159
-
-
Cebron, A.1
Norini, M.P.2
Beguiristain, T.3
-
13
-
-
33847168352
-
Biodegradation of polycyclic aromatic hydrocarbons
-
Cerniglia CE. Biodegradation of polycyclic aromatic hydrocarbons. Biodegradation 1992;3:351-68.
-
(1992)
Biodegradation
, vol.3
, pp. 351-368
-
-
Cerniglia, C.E.1
-
14
-
-
33644865858
-
Improved quantitative realtime PCR assays for enumeration of harmful algal species in field samples using an exogenous DNA reference standard
-
Coyne KJ, Handy SM, Demir E, et al. Improved quantitative realtime PCR assays for enumeration of harmful algal species in field samples using an exogenous DNA reference standard. Limnol Oceanogr-Meth 2005;3:381-91.
-
(2005)
Limnol Oceanogr-Meth
, vol.3
, pp. 381-391
-
-
Coyne, K.J.1
Handy, S.M.2
Demir, E.3
-
15
-
-
0035380609
-
Isolation and characterization of polycyclic aromatic hydrocarbon-degrading bacteria associated with the rhizosphere of salt marsh plants
-
Daane LL, Harjono I, Zylstra GJ, et al. Isolation and characterization of polycyclic aromatic hydrocarbon-degrading bacteria associated with the rhizosphere of salt marsh plants. Appl Environ Microb 2001;67:2683-91.
-
(2001)
Appl Environ Microb
, vol.67
, pp. 2683-2691
-
-
Daane, L.L.1
Harjono, I.2
Zylstra, G.J.3
-
16
-
-
84864518655
-
Improved real-time PCR estimation of gene copy number in soil extracts using an artificial reference
-
Daniell TJ, Davidson J, Alexander CJ, et al. Improved real-time PCR estimation of gene copy number in soil extracts using an artificial reference. J Microbiol Methods 2012;91:38-44.
-
(2012)
J Microbiol Methods
, vol.91
, pp. 38-44
-
-
Daniell, T.J.1
Davidson, J.2
Alexander, C.J.3
-
17
-
-
34547674725
-
Comparative quantitative prevalence of Mycobacteria and functionally abundant nidA, nahAc, and nagAc dioxygenase genes in coal tar contaminated sediments
-
DeBruyn JM, Chewning CS, Sayler GS. Comparative quantitative prevalence of Mycobacteria and functionally abundant nidA, nahAc, and nagAc dioxygenase genes in coal tar contaminated sediments. Environ Sci Technol 2007;41:5426-32.
-
(2007)
Environ Sci Technol
, vol.41
, pp. 5426-5432
-
-
DeBruyn, J.M.1
Chewning, C.S.2
Sayler, G.S.3
-
18
-
-
77954692062
-
Soil type-dependent responses to phenanthrene as revealed by determining the diversity and abundance of polycyclic aromatic hydrocarbon ringhydroxylating dioxygenase genes by using a novel PCR detection system
-
Ding GC, Heuer H, Zuhlke S, et al. Soil type-dependent responses to phenanthrene as revealed by determining the diversity and abundance of polycyclic aromatic hydrocarbon ringhydroxylating dioxygenase genes by using a novel PCR detection system. Appl Environ Microb 2010;76:4765-71.
-
(2010)
Appl Environ Microb
, vol.76
, pp. 4765-4771
-
-
Ding, G.C.1
Heuer, H.2
Zuhlke, S.3
-
19
-
-
3242764705
-
Abundance of dioxygenase genes similar to Ralstonia sp strain U2 nagAc is correlated with naphthalene concentrations in coal tar-contaminated freshwater sediments
-
Dionisi HM, Chewning CS, Morgan KH, et al. Abundance of dioxygenase genes similar to Ralstonia sp strain U2 nagAc is correlated with naphthalene concentrations in coal tar-contaminated freshwater sediments. Appl Environ Microb 2004;70:3988-95.
-
(2004)
Appl Environ Microb
, vol.70
, pp. 3988-3995
-
-
Dionisi, H.M.1
Chewning, C.S.2
Morgan, K.H.3
-
20
-
-
33750087103
-
Real-time PCR
-
New York: Taylor
-
Dorak MT. Real-time PCR. New York: Taylor, Francis Group, 2006.
-
(2006)
-
-
Dorak, M.T.1
-
22
-
-
27544477399
-
Rieske business: structurefunction of Rieske non-heme oxygenases
-
Ferraro DJ, Gakhar L, Ramaswamy S. Rieske business: structurefunction of Rieske non-heme oxygenases. Biochem Bioph Res Co 2005;338:175-90.
-
(2005)
Biochem Bioph Res Co
, vol.338
, pp. 175-190
-
-
Ferraro, D.J.1
Gakhar, L.2
Ramaswamy, S.3
-
23
-
-
0042914355
-
Novel maltotriose esters enhance biodegradation of Aroclor 1242 by Burkholderia cepacia LB400
-
Ferrer M, Golyshin P, Timmis KN. Novel maltotriose esters enhance biodegradation of Aroclor 1242 by Burkholderia cepacia LB400. World J Microbiol Biotechnol 2003;19:637-43.
-
(2003)
World J Microbiol Biotechnol
, vol.19
, pp. 637-643
-
-
Ferrer, M.1
Golyshin, P.2
Timmis, K.N.3
-
24
-
-
0037394251
-
Larger PAHs pose big risk
-
Fetzer J. Larger PAHs pose big risk. Environ Sci Technol 2003;37:121A.
-
(2003)
Environ Sci Technol
, vol.37
, pp. 121A
-
-
Fetzer, J.1
-
25
-
-
0034029015
-
Aromatic hydrocarbon dioxygenases in environmental biotechnology
-
Gibson DT, Parales RE. Aromatic hydrocarbon dioxygenases in environmental biotechnology. Curr Opin Biotech 2000;11: 236-43.
-
(2000)
Curr Opin Biotech
, vol.11
, pp. 236-243
-
-
Gibson, D.T.1
Parales, R.E.2
-
26
-
-
34547644103
-
Characterization of biphenyl dioxygenase of Pandoraea pnomenusa B-356 as a potent polychlorinated biphenyl-degrading enzyme
-
Gómez-Gil L, Kumar P, Barriault D, et al. Characterization of biphenyl dioxygenase of Pandoraea pnomenusa B-356 as a potent polychlorinated biphenyl-degrading enzyme. J Bacteriol 2007;189:5705-15.
-
(2007)
J Bacteriol
, vol.189
, pp. 5705-5715
-
-
Gómez-Gil, L.1
Kumar, P.2
Barriault, D.3
-
27
-
-
0034468557
-
Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
-
Griffiths RI, Whiteley AS, O'Donnell AG, et al. Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl Environ Microb 2000;66: 5488-91.
-
(2000)
Appl Environ Microb
, vol.66
, pp. 5488-5491
-
-
Griffiths, R.I.1
Whiteley, A.S.2
O'Donnell, A.G.3
-
28
-
-
0037506334
-
Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria
-
Habe H, Omori T. Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria. Biosci Biotech Bioch 2003;67:225-43.
-
(2003)
Biosci Biotech Bioch
, vol.67
, pp. 225-243
-
-
Habe, H.1
Omori, T.2
-
29
-
-
39649117992
-
Enrichment, isolation, and phylogenetic identification of polycyclic aromatic hydrocarbon-degrading bacteria from Elizabeth River sediments
-
Hilyard EJ, Jones-Meehan JM, Spargo BJ, et al. Enrichment, isolation, and phylogenetic identification of polycyclic aromatic hydrocarbon-degrading bacteria from Elizabeth River sediments. Appl Environ Microb 2008;74:1176-82.
-
(2008)
Appl Environ Microb
, vol.74
, pp. 1176-1182
-
-
Hilyard, E.J.1
Jones-Meehan, J.M.2
Spargo, B.J.3
-
30
-
-
79958257334
-
Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples
-
Iwai S, Johnson TA, Chai BL, et al. Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples. Appl Environ Microb 2011;77:3551-7.
-
(2011)
Appl Environ Microb
, vol.77
, pp. 3551-3557
-
-
Iwai, S.1
Johnson, T.A.2
Chai, B.L.3
-
31
-
-
34247513062
-
Characterization of two biphenyl dioxygenases for biphenyl/PCB degradation in a PCB degrader, Rhodococcus sp strain RHA1
-
Iwasaki T, Takeda H, Miyauchi K, et al. Characterization of two biphenyl dioxygenases for biphenyl/PCB degradation in a PCB degrader, Rhodococcus sp strain RHA1. Biosci Biotech Bioch 2007;71:993-1002.
-
(2007)
Biosci Biotech Bioch
, vol.71
, pp. 993-1002
-
-
Iwasaki, T.1
Takeda, H.2
Miyauchi, K.3
-
32
-
-
8744222675
-
Pore size dependence on growth temperature is a common characteristic of the major outer membrane protein OprF in psychrotrophic and mesophilic Pseudomonas species
-
Jaouen T, Dé E, Chevalier S, et al. Pore size dependence on growth temperature is a common characteristic of the major outer membrane protein OprF in psychrotrophic and mesophilic Pseudomonas species. Appl Environ Microbiol 2004;70:6665-9.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 6665-6669
-
-
Jaouen, T.1
Dé, E.2
Chevalier, S.3
-
33
-
-
0347264753
-
Crystal structure of naphthalene dioxygenase: Side-on binding of dioxygen to iron
-
Karlsson A, Parales JV, Parales RE, et al. Crystal structure of naphthalene dioxygenase: Side-on binding of dioxygen to iron. Science 2003;299:1039-42.
-
(2003)
Science
, vol.299
, pp. 1039-1042
-
-
Karlsson, A.1
Parales, J.V.2
Parales, R.E.3
-
34
-
-
0036866607
-
Classification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Mycobacterium sp
-
Khan AA, Kim SJ, Paine DD, et al. Classification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Mycobacterium sp. strain PYR-1, as Mycobacterium vanbaalenii sp. nov. Int J Syst Evol Microbiol 2002;52:1997-2002.
-
(2002)
strain PYR-1, as Mycobacterium vanbaalenii sp. nov. Int J Syst Evol Microbiol
, vol.52
, pp. 1997-2002
-
-
Khan, A.A.1
Kim, S.J.2
Paine, D.D.3
-
35
-
-
43149093388
-
A new classification system for bacterial Rieske non-heme iron aromatic ring-hydroxylating oxygenases
-
Kweon O, Kim S-J, Baek S, et al. A new classification system for bacterial Rieske non-heme iron aromatic ring-hydroxylating oxygenases. BMC Biochem 2008;9:11.
-
(2008)
BMC Biochem
, vol.9
, pp. 11
-
-
Kweon, O.1
Kim, S.-J.2
Baek, S.3
-
36
-
-
0034019871
-
Quantification of phnAc and nahAc in contaminated New Zealand soils by competitive PCR
-
Laurie AD, Lloyd-Jones G. Quantification of phnAc and nahAc in contaminated New Zealand soils by competitive PCR. Appl Environ Microb 2000;66:1814-7.
-
(2000)
Appl Environ Microb
, vol.66
, pp. 1814-1817
-
-
Laurie, A.D.1
Lloyd-Jones, G.2
-
37
-
-
33845873289
-
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
-
Letunic I, Bork P. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 2007;23:127-8.
-
(2007)
Bioinformatics
, vol.23
, pp. 127-128
-
-
Letunic, I.1
Bork, P.2
-
38
-
-
0032925832
-
Analysis of catabolic genes for naphthalene and phenanthrene degradation in contaminated New Zealand soils
-
Lloyd-Jones G, Laurie AD, Hunter DWF, et al. Analysis of catabolic genes for naphthalene and phenanthrene degradation in contaminated New Zealand soils. FEMS Microbiol Ecol 1999;29:69-79.
-
(1999)
FEMS Microbiol Ecol
, vol.29
, pp. 69-79
-
-
Lloyd-Jones, G.1
Laurie, A.D.2
Hunter, D.W.F.3
-
39
-
-
33746191929
-
The complete genome of Rhodococcus sp RHA1 provides insights into a catabolic powerhouse
-
McLeod MP, Warren RL, Hsiao WWL, et al. The complete genome of Rhodococcus sp RHA1 provides insights into a catabolic powerhouse. Proc Natl Acad Sci U S A 2006;103:15582-7.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 15582-15587
-
-
McLeod, M.P.1
Warren, R.L.2
Hsiao, W.W.L.3
-
40
-
-
84860495991
-
Effect of activated carbon amendment on bacterial community structure and functions in a PAH impacted urban soil
-
Meynet P, Hale SE, Davenport RJ, et al. Effect of activated carbon amendment on bacterial community structure and functions in a PAH impacted urban soil. Environ Sci Technol 2012;46:5057-66.
-
(2012)
Environ Sci Technol
, vol.46
, pp. 5057-5066
-
-
Meynet, P.1
Hale, S.E.2
Davenport, R.J.3
-
41
-
-
0019519171
-
Searches for ultimate chemical carcinogens and their reactions with cellular macromolecules
-
Miller EC, Miller JA. Searches for ultimate chemical carcinogens and their reactions with cellular macromolecules. Cancer 1981;47:2327-45.
-
(1981)
Cancer
, vol.47
, pp. 2327-2345
-
-
Miller, E.C.1
Miller, J.A.2
-
42
-
-
1842509857
-
Convenient determination of DNA extraction efficiency using an external DNA recovery standard and quantitative-competitive PCR
-
Mumy KL, Findlay RH. Convenient determination of DNA extraction efficiency using an external DNA recovery standard and quantitative-competitive PCR. J Microbiol Methods 2004;57:259-68.
-
(2004)
J Microbiol Methods
, vol.57
, pp. 259-268
-
-
Mumy, K.L.1
Findlay, R.H.2
-
43
-
-
33745132697
-
Microbial dioxygenase gene population shifts during polycyclic aromatic hydrocarbon biodegradation
-
Ni Chadhain SM, Norman RS, Pesce KV, et al. Microbial dioxygenase gene population shifts during polycyclic aromatic hydrocarbon biodegradation. Appl Environ Microb 2006;72: 4078-87.
-
(2006)
Appl Environ Microb
, vol.72
, pp. 4078-4087
-
-
Ni Chadhain, S.M.1
Norman, R.S.2
Pesce, K.V.3
-
45
-
-
33845383312
-
A targeted real-time PCR assay for studying naphthalene degradation in the environment
-
Nyyssonen M, Piskonen R, Itavaara M. A targeted real-time PCR assay for studying naphthalene degradation in the environment. Microbial Ecol 2006;52:533-43.
-
(2006)
Microbial Ecol
, vol.52
, pp. 533-543
-
-
Nyyssonen, M.1
Piskonen, R.2
Itavaara, M.3
-
46
-
-
74249111651
-
A study of PCR inhibition mechanisms using real time PCR
-
Opel KL, Chung D, McCord BR. A study of PCR inhibition mechanisms using real time PCR. J Forensic Sci 2010;55:25-33.
-
(2010)
J Forensic Sci
, vol.55
, pp. 25-33
-
-
Opel, K.L.1
Chung, D.2
McCord, B.R.3
-
48
-
-
0037826062
-
The role of active-site residues in naphthalene dioxygenase
-
Parales RE. The role of active-site residues in naphthalene dioxygenase. J Ind Microbiol Biot 2003;30:271-8.
-
(2003)
J Ind Microbiol Biot
, vol.30
, pp. 271-278
-
-
Parales, R.E.1
-
49
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson WR, Lipman DJ. Improved tools for biological sequence comparison. P Natl Acad Sci USA 1988;85:2444-8.
-
(1988)
P Natl Acad Sci USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
50
-
-
0032534926
-
Biodegradation of bicyclic and polycyclic aromatic hydrocarbons in anaerobic enrichments
-
Rockne KJ, Strand SE. Biodegradation of bicyclic and polycyclic aromatic hydrocarbons in anaerobic enrichments. Environ Sci Technol 1998;32:3962-7.
-
(1998)
Environ Sci Technol
, vol.32
, pp. 3962-3967
-
-
Rockne, K.J.1
Strand, S.E.2
-
51
-
-
0003903343
-
Molecular Cloning: A Laboratory Manual
-
NewYork: Cold Spring Harbor Laboratory Press
-
Sambrook J, Fritsch EF, Maniatis T. Molecular Cloning: A Laboratory Manual. NewYork: Cold Spring Harbor Laboratory Press, 2001.
-
(2001)
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
52
-
-
0029128756
-
A novel transformation of polychlorinated-biphenyl by Rhodococcus sp. strain RHA1
-
Seto M, Kimbara K, Shimura M, et al. A novel transformation of polychlorinated-biphenyl by Rhodococcus sp. strain RHA1. Appl Environ Microb 1995;61:3353-8.
-
(1995)
Appl Environ Microb
, vol.61
, pp. 3353-3358
-
-
Seto, M.1
Kimbara, K.2
Shimura, M.3
-
54
-
-
84877037742
-
Comparison of methods for the characterization and quantification of carbon forms in estuarine and marine sediments fromcoal mining regions
-
Siavalas G, Werner D, Karapanagioti HK, et al. Comparison of methods for the characterization and quantification of carbon forms in estuarine and marine sediments fromcoal mining regions. Org Geochem 2013;59:61-74.
-
(2013)
Org Geochem
, vol.59
, pp. 61-74
-
-
Siavalas, G.1
Werner, D.2
Karapanagioti, H.K.3
-
55
-
-
4143146355
-
Molecular characterization of a phenanthrene degradation pathway in Mycobacterium vanbaalenii PYR-1
-
Stingley RL, Khan AA, Cerniglia CE. Molecular characterization of a phenanthrene degradation pathway in Mycobacterium vanbaalenii PYR-1. Biochem Bioph Res Co 2004;322:133-46.
-
(2004)
Biochem Bioph Res Co
, vol.322
, pp. 133-146
-
-
Stingley, R.L.1
Khan, A.A.2
Cerniglia, C.E.3
-
56
-
-
0035379677
-
Application of the 5' fluorogenic exonuclease assay (TaqMan) for quantitative ribosomal DNA and rRNA analysis in sediments
-
Stults JR, Snoeyenbos-West O, Methe B, et al. Application of the 5' fluorogenic exonuclease assay (TaqMan) for quantitative ribosomal DNA and rRNA analysis in sediments. Appl Environ Microb 2001;67:2781-9.
-
(2001)
Appl Environ Microb
, vol.67
, pp. 2781-2789
-
-
Stults, J.R.1
Snoeyenbos-West, O.2
Methe, B.3
-
57
-
-
3342920601
-
Prospects for inferring very large phylogenies by using the neighbor-joining method
-
Tamura K, Nei M, Kumar S. Prospects for inferring very large phylogenies by using the neighbor-joining method. P Natl Acad Sci USA 2004;101:11030-5.
-
(2004)
P Natl Acad Sci USA
, vol.101
, pp. 11030-11035
-
-
Tamura, K.1
Nei, M.2
Kumar, S.3
-
58
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011;28:2731-9.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
-
59
-
-
0031574072
-
The CLUSTAL?X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, et al. The CLUSTAL?X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997;25:4876-82.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
-
60
-
-
60349117029
-
Development of real-time PCR assay for detection and quantification of Sinorhizobium meliloti in soil and plant tissue
-
Trabelsi D, Pini F, Aouani ME, et al. Development of real-time PCR assay for detection and quantification of Sinorhizobium meliloti in soil and plant tissue. Lett Appl Microbiol 2009;48:355-61.
-
(2009)
Lett Appl Microbiol
, vol.48
, pp. 355-361
-
-
Trabelsi, D.1
Pini, F.2
Aouani, M.E.3
-
61
-
-
84949270957
-
Emergency planning and community right-to-know act- Section 313
-
Washington DC: Office of Environmental Information
-
USEPA. Emergency planning and community right-to-know act- Section 313. Guidance for Reporting Toxic Chemicals: Polycyclic Aromatic Compounds Category. Washington DC: Office of Environmental Information, 2001.
-
(2001)
Guidance for Reporting Toxic Chemicals: Polycyclic Aromatic Compounds Category
-
-
-
62
-
-
79958812689
-
Development of a Relative Potency Factor (RPF) Approach for Polycyclic Aromatic Hydrocarbon (PAH) Mixtures
-
Washington, DC: U.S. Environmental Protection
-
USEPA. Development of a Relative Potency Factor (RPF) Approach for Polycyclic Aromatic Hydrocarbon (PAH) Mixtures. Washington, DC: U.S. Environmental Protection, 2010.
-
(2010)
-
-
-
63
-
-
70449358972
-
Accurate quantification of microorganisms in PCR-inhibiting environmental DNA extracts by a novel internal amplification control approach using biotrove openarrays
-
van Doorn R, Klerks MM, van Gent-Pelzer MPE, et al. Accurate quantification of microorganisms in PCR-inhibiting environmental DNA extracts by a novel internal amplification control approach using biotrove openarrays. Appl Environ Microb 2009;75:7253-60.
-
(2009)
Appl Environ Microb
, vol.75
, pp. 7253-7260
-
-
van Doorn, R.1
Klerks, M.M.2
van Gent-Pelzer, M.P.E.3
-
64
-
-
84875885665
-
Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibratedmicroarray system
-
Vilchez-Vargas R, Geffers R, Suarez-Diez M, et al. Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibratedmicroarray system. Environ Microbiol 2013;15: 1016-39.
-
(2013)
Environ Microbiol
, vol.15
, pp. 1016-1039
-
-
Vilchez-Vargas, R.1
Geffers, R.2
Suarez-Diez, M.3
-
65
-
-
0037015403
-
Mechanism and applications of Rieske non-heme iron dioxygenases
-
Wackett LP. Mechanism and applications of Rieske non-heme iron dioxygenases. Enzyme Microbial Technol 2002;31:577-87.
-
(2002)
Enzyme Microbial Technol
, vol.31
, pp. 577-587
-
-
Wackett, L.P.1
-
66
-
-
0032906465
-
In situ, real-time catabolic gene expression: extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater
-
Wilson MS, Bakermans C, Madsen EL. In situ, real-time catabolic gene expression: extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater. Appl Environ Microb 1999;65:80-7.
-
(1999)
Appl Environ Microb
, vol.65
, pp. 80-87
-
-
Wilson, M.S.1
Bakermans, C.2
Madsen, E.L.3
-
67
-
-
70349907086
-
Diversity, abundance, and consistency of microbial oxygenase expression and biodegradation in a shallow contaminated aquifer
-
Yagi JM, Madsen EL. Diversity, abundance, and consistency of microbial oxygenase expression and biodegradation in a shallow contaminated aquifer. Appl Environ Microb 2009;75:6478-87.
-
(2009)
Appl Environ Microb
, vol.75
, pp. 6478-6487
-
-
Yagi, J.M.1
Madsen, E.L.2
-
68
-
-
33746199793
-
Genomic DNA functions as a universal external standard in quantitative real-time PCR
-
Yun JJ, Heisler LE, Hwang IIL, et al. Genomic DNA functions as a universal external standard in quantitative real-time PCR. Nucleic Acids Res 2006;34:10.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 10
-
-
Yun, J.J.1
Heisler, L.E.2
Hwang, I.I.L.3
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