-
1
-
-
0033775613
-
The presence of humic substances and DNA in RNA extracts affects hybridization results
-
Alm E.W., Zheng D., Raskin L. The presence of humic substances and DNA in RNA extracts affects hybridization results. Appl. Environ. Microbiol. 66:2000;4547-4554.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 4547-4554
-
-
Alm, E.W.1
Zheng, D.2
Raskin, L.3
-
2
-
-
0030011823
-
Molecular microbial diversity of an agricultural soil in Wisconsin
-
Borneman J., Skroch P.W., O'Sullivan K.M., Palus J.A., Rumjanek N.G., Jansen J.L., Nienhuis J., Triplett E.W. Molecular microbial diversity of an agricultural soil in Wisconsin. Appl. Environ. Microbiol. 62:1996;1935-1943.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 1935-1943
-
-
Borneman, J.1
Skroch, P.W.2
O'Sullivan, K.M.3
Palus, J.A.4
Rumjanek, N.G.5
Jansen, J.L.6
Nienhuis, J.7
Triplett, E.W.8
-
3
-
-
0347927257
-
In situ exposure to low herbicide concentrations affects microbial population composition and catabolic gene frequency in an aerobic shallow aquifer
-
de Lipthay J.R., Tuxen N., Johnsen K., Hansen L.H., Albrechtsen H.-J., Bjerg P.L., Aamand J. In situ exposure to low herbicide concentrations affects microbial population composition and catabolic gene frequency in an aerobic shallow aquifer. Appl. Environ. Microbiol. 69:2003;461-467.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 461-467
-
-
De Lipthay, J.R.1
Tuxen, N.2
Johnsen, K.3
Hansen, L.H.4
Albrechtsen, H.-J.5
Bjerg, P.L.6
Aamand, J.7
-
4
-
-
0036790017
-
Microbial population genomics and ecology
-
DeLong E.F. Microbial population genomics and ecology. Curr. Opin. Microbiol. 5:2002;520-524.
-
(2002)
Curr. Opin. Microbiol.
, vol.5
, pp. 520-524
-
-
Delong, E.F.1
-
5
-
-
0001110101
-
Bacterial and fungal activities in soil: Separation of bacteria by a rapid fractionated centrifugation technique
-
Faegri A., Torsvik V.L., Goksøyr J. Bacterial and fungal activities in soil: separation of bacteria by a rapid fractionated centrifugation technique. Soil Biol. Biochem. 9:1977;105-112.
-
(1977)
Soil Biol. Biochem.
, vol.9
, pp. 105-112
-
-
Faegri, A.1
Torsvik, V.L.2
Goksøyr, J.3
-
6
-
-
0030250855
-
The use of a classic lipid extraction method for simultaneous recovery of organic pollutants and microbial lipids from sediments
-
Fang J., Findlay R.H. The use of a classic lipid extraction method for simultaneous recovery of organic pollutants and microbial lipids from sediments. J. Microbiol. Methods. 27:1996;63-71.
-
(1996)
J. Microbiol. Methods
, vol.27
, pp. 63-71
-
-
Fang, J.1
Findlay, R.H.2
-
7
-
-
0032710940
-
Quantification of bias related to the extraction of DNA directly from soils
-
Frostegard A., Courtois S., Ramisse V., Clerc S., Bernillon D., LeGall F., Jeanin P., Nesme X., Simonet P. Quantification of bias related to the extraction of DNA directly from soils. Appl. Environ. Microbiol. 65:1999;5409-5420.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 5409-5420
-
-
Frostegard, A.1
Courtois, S.2
Ramisse, V.3
Clerc, S.4
Bernillon, D.5
Legall, F.6
Jeanin, P.7
Nesme, X.8
Simonet, P.9
-
8
-
-
0034672729
-
DNA extraction from coral reef sediment bacteria for the polymerase chain reaction
-
Guthrie J.N., Moriarty D.J.W., Blackall L.L. DNA extraction from coral reef sediment bacteria for the polymerase chain reaction. J. Microbiol. Methods. 43:2000;73-80.
-
(2000)
J. Microbiol. Methods
, vol.43
, pp. 73-80
-
-
Guthrie, J.N.1
Moriarty, D.J.W.2
Blackall, L.L.3
-
9
-
-
0027502979
-
Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria
-
Herrick J.B., Madsen E.L., Batt C.A., Ghiorse W.C. Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria. Appl. Environ. Microbiol. 59:1993;687-694.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 687-694
-
-
Herrick, J.B.1
Madsen, E.L.2
Batt, C.A.3
Ghiorse, W.C.4
-
10
-
-
0002380902
-
Isolation and purification of bacterial DNA from soil
-
R.W. Weaver, S. Angle, P. Bottomley, D. Bezdicek, S. Smith, A. Tabatabai, & A. Wollum. Madison, WI: Soil Science Society of America
-
Holben W.E. Isolation and purification of bacterial DNA from soil. Weaver R.W., Angle S., Bottomley P., Bezdicek D., Smith S., Tabatabai A., Wollum A. Methods of Soil Analysis: Part 2. Microbiological and Biochemical Properties. 1994;727-751 Soil Science Society of America, Madison, WI.
-
(1994)
Methods of Soil Analysis: Part 2. Microbiological and Biochemical Properties
, pp. 727-751
-
-
Holben, W.E.1
-
11
-
-
0023866522
-
DNA probe method for the detection of specific microorganisms in the soil bacterial community
-
Holben W.E., Jansson J.K., Chelm B.K., Tiedje J.M. DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl. Environ. Microbiol. 54:1988;703-711.
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 703-711
-
-
Holben, W.E.1
Jansson, J.K.2
Chelm, B.K.3
Tiedje, J.M.4
-
12
-
-
0030782656
-
A simple, efficient method for separation of humic substances and DNA from environmental samples
-
Jackson C.R., Harper J.P., Willoughby D., Rosen E.E., Churchill P.F. A simple, efficient method for separation of humic substances and DNA from environmental samples. Appl. Environ. Microbiol. 63:1997;4993-4995.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4993-4995
-
-
Jackson, C.R.1
Harper, J.P.2
Willoughby, D.3
Rosen, E.E.4
Churchill, P.F.5
-
13
-
-
0032718452
-
Comparison of different methods for the isolation and purification of total community DNA from soil
-
Krsek M., Wellington E.M.H. Comparison of different methods for the isolation and purification of total community DNA from soil. J. Microbiol. Methods. 39:1999;1-16.
-
(1999)
J. Microbiol. Methods
, vol.39
, pp. 1-16
-
-
Krsek, M.1
Wellington, E.M.H.2
-
14
-
-
0031842281
-
Small-scale DNA sample preparation method for field PCR detection of microbial cells and spores in soil
-
Kuske C.R., Banton K.L., Adorada D.L., Stark P.C., Hill K.K., Jackson P.J. Small-scale DNA sample preparation method for field PCR detection of microbial cells and spores in soil. Appl. Environ. Microbiol. 64:1998;2463-2472.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 2463-2472
-
-
Kuske, C.R.1
Banton, K.L.2
Adorada, D.L.3
Stark, P.C.4
Hill, K.K.5
Jackson, P.J.6
-
15
-
-
0031692369
-
Genotypic and phenotypic responses of a riverine microbial community to polycyclic aromatic hydrocarbon contamination
-
Langworthy D.E., Stapleton R.D., Sayler G.S., Findlay R.H. Genotypic and phenotypic responses of a riverine microbial community to polycyclic aromatic hydrocarbon contamination. Appl. Environ. Microbiol. 64:1998;3422-3428.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3422-3428
-
-
Langworthy, D.E.1
Stapleton, R.D.2
Sayler, G.S.3
Findlay, R.H.4
-
16
-
-
0036490728
-
Lipid analysis of the response of a sedimentary microbial community to polycyclic aromatic hydrocarbons
-
Langworthy D.E., Stapleton R.D., Sayler G.S., Findlay R.H. Lipid analysis of the response of a sedimentary microbial community to polycyclic aromatic hydrocarbons. Microb. Ecol. 43:2002;189-198.
-
(2002)
Microb. Ecol.
, vol.43
, pp. 189-198
-
-
Langworthy, D.E.1
Stapleton, R.D.2
Sayler, G.S.3
Findlay, R.H.4
-
17
-
-
0034019871
-
Quantification of phnAc and nahAc in contaminated New Zealand Soils by competitive PCR
-
Laurie A.D., Lloyd-Jones G. Quantification of phnAc and nahAc in contaminated New Zealand Soils by competitive PCR. Appl. Environ. Microbiol. 66:2000;1814-1817.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 1814-1817
-
-
Laurie, A.D.1
Lloyd-Jones, G.2
-
18
-
-
0030438385
-
Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method
-
Lee S.-Y., Bollinger J., Bezdicek D., Ogram A. Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method. Appl. Environ. Microbiol. 62:1996;3787-3793.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3787-3793
-
-
Lee, S.-Y.1
Bollinger, J.2
Bezdicek, D.3
Ogram, A.4
-
20
-
-
0028111397
-
Purification of DNA from estuarine sediments
-
Lovell C., Piceno Y. Purification of DNA from estuarine sediments. J. Microbiol. Methods. 20:1994;161-174.
-
(1994)
J. Microbiol. Methods
, vol.20
, pp. 161-174
-
-
Lovell, C.1
Piceno, Y.2
-
21
-
-
0035349953
-
DNA extraction from soils: Old bias for new microbial diversity analysis methods
-
Martin-Laurent F., Philippot L., Hallet S., Chaussod R., Germon J.C., Soulas G., Catroux G. DNA extraction from soils: old bias for new microbial diversity analysis methods. Appl. Environ. Microbiol. 67:2001;2354-2359.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 2354-2359
-
-
Martin-Laurent, F.1
Philippot, L.2
Hallet, S.3
Chaussod, R.4
Germon, J.C.5
Soulas, G.6
Catroux, G.7
-
22
-
-
0033981078
-
Development of catechol 2,3-dioxygenase-specific primers for monitoring bioremediation by competitive quantitative PCR
-
Mesarch M.B., Nakatsu C.H., Nies L. Development of catechol 2,3-dioxygenase-specific primers for monitoring bioremediation by competitive quantitative PCR. Appl. Environ. Microbiol. 66:2000;678-683.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 678-683
-
-
Mesarch, M.B.1
Nakatsu, C.H.2
Nies, L.3
-
23
-
-
0032703237
-
Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples
-
Miller D.N., Bryant J.E., Madsen E.L., Ghiorse W.C. Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Appl. Environ. Microbiol. 65:1999;4715-4724.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4715-4724
-
-
Miller, D.N.1
Bryant, J.E.2
Madsen, E.L.3
Ghiorse, W.C.4
-
24
-
-
0028269319
-
Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment
-
Moré M.I., Herrick J.B., Silva M.C., Ghiorse W.C., Madsen E.L. Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment. Appl. Environ. Microbiol. 60:1994;1572-1580.
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 1572-1580
-
-
Moré, M.I.1
Herrick, J.B.2
Silva, M.C.3
Ghiorse, W.C.4
Madsen, E.L.5
-
25
-
-
0035018373
-
Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia
-
Niemi R.M., Heiskanen I., Wallenius K., Lindstrom K. Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia. J. Microbiol. Methods. 45:2001;155-165.
-
(2001)
J. Microbiol. Methods
, vol.45
, pp. 155-165
-
-
Niemi, R.M.1
Heiskanen, I.2
Wallenius, K.3
Lindstrom, K.4
-
26
-
-
0023748555
-
The use of gene probes in the rapid analysis of natural microbial communities
-
Ogram A.V., Sayler G.S. The use of gene probes in the rapid analysis of natural microbial communities. J. Ind. Microbiol. 3:1988;281-292.
-
(1988)
J. Ind. Microbiol.
, vol.3
, pp. 281-292
-
-
Ogram, A.V.1
Sayler, G.S.2
-
27
-
-
12744281935
-
The extraction and purification of microbial DNA from sediments
-
Ogram A.V., Sayler G.S., Barkay T. The extraction and purification of microbial DNA from sediments. J. Microbiol. Methods. 7:1987;57-66.
-
(1987)
J. Microbiol. Methods
, vol.7
, pp. 57-66
-
-
Ogram, A.V.1
Sayler, G.S.2
Barkay, T.3
-
28
-
-
0026745065
-
Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction
-
Picard C., Ponsonnet C., Paget E., Nesme X., Simonet P. Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction. Appl. Environ. Microbiol. 58:1992;2717-2722.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 2717-2722
-
-
Picard, C.1
Ponsonnet, C.2
Paget, E.3
Nesme, X.4
Simonet, P.5
-
29
-
-
0037208462
-
Competitive touchdown PCR for estimation of Escherichia coli DNA recovery in soil DNA extraction
-
Rose P., Harkin J.M., Hickey W.J. Competitive touchdown PCR for estimation of Escherichia coli DNA recovery in soil DNA extraction. J. Microbiol. Methods. 52:2003;29-38.
-
(2003)
J. Microbiol. Methods
, vol.52
, pp. 29-38
-
-
Rose, P.1
Harkin, J.M.2
Hickey, W.J.3
-
30
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. 1.25-1.28; 5.28-5.32.
-
Sambrook, J., Fritsch, E.F., Maniatis, T., 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. 1.25-1.28; 5.28-5.32.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
32
-
-
0032977102
-
Methods for DNA extraction from various soils: A comparison
-
Tien C.C., Chao C.C., Chao W.L. Methods for DNA extraction from various soils: a comparison. J. Appl. Microbiol. 86:1999;937-943.
-
(1999)
J. Appl. Microbiol.
, vol.86
, pp. 937-943
-
-
Tien, C.C.1
Chao, C.C.2
Chao, W.L.3
-
33
-
-
0001894963
-
Isolation of bacterial DNA from soil
-
Torsvik V.L. Isolation of bacterial DNA from soil. Soil Biol. Biochem. 12:1980;15-21.
-
(1980)
Soil Biol. Biochem.
, vol.12
, pp. 15-21
-
-
Torsvik, V.L.1
-
34
-
-
0025903592
-
Rapid method for direct extraction of DNA from soil and sediment
-
Tsai Y.-L., Olson B.H. Rapid method for direct extraction of DNA from soil and sediment. Appl. Environ. Microbiol. 57:1991;1070-1074.
-
(1991)
Appl. Environ. Microbiol.
, vol.57
, pp. 1070-1074
-
-
Tsai, Y.-L.1
Olson, B.H.2
-
36
-
-
0031854206
-
Rapid purification of DNA from soil for molecular biodiversity analysis
-
Yeates C., Gillings M.R. Rapid purification of DNA from soil for molecular biodiversity analysis. Lett. Appl. Microbiol. 27:1998;49-53.
-
(1998)
Lett. Appl. Microbiol.
, vol.27
, pp. 49-53
-
-
Yeates, C.1
Gillings, M.R.2
-
37
-
-
0030821740
-
Amplification of crude microbial DNA extracted from soil
-
Yeates C., Gillings M.R., Davison A.D., Altavilla N., Veal D.A. Amplification of crude microbial DNA extracted from soil. Lett. Appl. Microbiol. 25:1997;303-307.
-
(1997)
Lett. Appl. Microbiol.
, vol.25
, pp. 303-307
-
-
Yeates, C.1
Gillings, M.R.2
Davison, A.D.3
Altavilla, N.4
Veal, D.A.5
-
38
-
-
0027195585
-
Absolute quantification of target DNA: A simple competitive PCR for efficient analysis of multiple samples
-
Zachar V., Thomas R.A., Goustin A.S. Absolute quantification of target DNA: a simple competitive PCR for efficient analysis of multiple samples. Nucleic Acids Res. 21:1993;2017-2018.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 2017-2018
-
-
Zachar, V.1
Thomas, R.A.2
Goustin, A.S.3
|