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Volumn 75, Issue 20, 2009, Pages 6478-6487

Diversity, abundance, and consistency of microbial oxygenase expression and biodegradation in a shallow contaminated aquifer

Author keywords

[No Author keywords available]

Indexed keywords

AMBIENT CONCENTRATIONS; BIODEGRADATION POTENTIALS; CDNA SEQUENCE; COMMUNITY STABILITY; CONTAMINATED AQUIFER; DIOXYGENASE GENES; DIOXYGENASES; GENE SEQUENCES; GROUNDWATER MONITORING WELLS; IN-FIELD; IN-SITU; MICROBIAL COMMUNITIES; OXYGENASES; QUANTITATIVE-COMPETITIVE PCR; RHODOCOCCUS; SHORT-TERM VARIATIONS; SPHINGOMONAS; STRUCTURAL GENE; SUBSURFACE STUDY; TEMPORAL VARIABILITY; TIME FRAME;

EID: 70349907086     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01091-09     Document Type: Article
Times cited : (25)

References (73)
  • 1
    • 34547098835 scopus 로고    scopus 로고
    • Bioremediation and monitoring of aromatic-polluted habitats
    • Andreoni, V., and A. Gianfreda. 2007. Bioremediation and monitoring of aromatic-polluted habitats. Appl. Microbiol. Biotechnol. 76:287-308.
    • (2007) Appl. Microbiol. Biotechnol. , vol.76 , pp. 287-308
    • Andreoni, V.1    Gianfreda, A.2
  • 2
    • 0036690823 scopus 로고    scopus 로고
    • Geochemical and physiological evidence for mixed aerobic and anaerobic field biodegradation of coal tar waste by subsurface microbial communities
    • Bakermans, C., A. M. Hohnstock-Ashe, S. Padmanabhan, P. Padmanabhan, and E. L. Madsen. 2002. Geochemical and physiological evidence for mixed aerobic and anaerobic field biodegradation of coal tar waste by subsurface microbial communities. Microb. Ecol. 44:107-117.
    • (2002) Microb. Ecol. , vol.44 , pp. 107-117
    • Bakermans, C.1    Hohnstock-Ashe, A.M.2    Padmanabhan, S.3    Padmanabhan, P.4    Madsen, E.L.5
  • 3
    • 0036692251 scopus 로고    scopus 로고
    • Diversity of 16S rDNA and naphthalene dioxygenase genes from coal-tar-waste-contaminated aquifer waters
    • Bakermans, C., and E. L. Madsen. 2002. Diversity of 16S rDNA and naphthalene dioxygenase genes from coal-tar-waste-contaminated aquifer waters. Microb. Ecol. 44:95-106.
    • (2002) Microb. Ecol. , vol.44 , pp. 95-106
    • Bakermans, C.1    Madsen, E.L.2
  • 4
    • 0036220879 scopus 로고    scopus 로고
    • Detection in coal tar waste-contaminated groundwater of mRNA transcripts related to naphthalene dioxygenase by fluorescent in situ hybridization with tyramide signal amplification
    • DOI 10.1016/S0167-7012(02)00015-5, PII S0167701202000155
    • Bakermans, C., and E. L. Madsen. 2002. Detection in coal tar waste-contaminated groundwater of mRNA transcripts related to naphthalene dioxygenase by fluorescent in situ hybridization with tyramide signal amplification. J. Microbiol. Methods 50:75-84. (Pubitemid 34270791)
    • (2002) Journal of Microbiological Methods , vol.50 , Issue.1 , pp. 75-84
    • Bakermans, C.1    Madsen, E.L.2
  • 5
    • 43049126230 scopus 로고    scopus 로고
    • Enumeration of aromatic oxygenase genes to evaluate monitored natural attenuation at gasolinecontaminated sites
    • Baldwin, B. R., C. H. Nakatsu, and L. Nies. 2008. Enumeration of aromatic oxygenase genes to evaluate monitored natural attenuation at gasolinecontaminated sites. Water Res. 42:723-731.
    • (2008) Water Res. , vol.42 , pp. 723-731
    • Baldwin, B.R.1    Nakatsu, C.H.2    Nies, L.3
  • 6
    • 55849091789 scopus 로고    scopus 로고
    • Diversity of ring-hydroxylating dioxygenases in pristine and oil contaminated microbial mats at genomic and transcriptomic levels
    • Bordenave, S., M. Goñi-Urriza, C. Vilette, S. Blanchard, P. Caumette, and R. Duran. 2008. Diversity of ring-hydroxylating dioxygenases in pristine and oil contaminated microbial mats at genomic and transcriptomic levels. Environ. Microbiol. 10:3201-3211.
    • (2008) Environ. Microbiol. , vol.10 , pp. 3201-3211
    • Bordenave, S.1    Goñi-Urriza, M.2    Vilette, C.3    Blanchard, S.4    Caumette, P.5    Duran, R.6
  • 7
    • 67349163245 scopus 로고    scopus 로고
    • Benzene degradation by Ralstonia pickettii PKO1 in the presence of the alternative substrate succinate
    • Bucheli-Witschel, M., T. Hafner, I. Rüegg, and T. Egli. 2009. Benzene degradation by Ralstonia pickettii PKO1 in the presence of the alternative substrate succinate. Biodegradation 20:419-431.
    • (2009) Biodegradation , vol.20 , pp. 419-431
    • Bucheli-Witschel, M.1    Hafner, T.2    Rüegg, I.3    Egli, T.4
  • 8
    • 45749109478 scopus 로고    scopus 로고
    • Microbial communities in contaminated sediments after bioremediation to submicromolar levels
    • Cardenas, E., W. M. Wu, M. B. Leigh, J. Carley, S. Carroll, T. Gentry, et al. 2008. Microbial communities in contaminated sediments after bioremediation to submicromolar levels. Appl. Environ. Microbiol. 74:3718-3729.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 3718-3729
    • Cardenas, E.1    Wu, W.M.2    Leigh, M.B.3    Carley, J.4    Carroll, S.5    Gentry, T.6
  • 9
    • 42249095068 scopus 로고    scopus 로고
    • Real-time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHD) genes from gram-positive and gram-negative bacteria in soil and sediment samples
    • Cébron, A., M. P. Norini, T. Beguiristain, and C. Leyval. 2008. Real-time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHD) genes from gram-positive and gram-negative bacteria in soil and sediment samples. J. Microbiol. Methods 73:148-159.
    • (2008) J. Microbiol. Methods , vol.73 , pp. 148-159
    • Cébron, A.1    Norini, M.P.2    Beguiristain, T.3    Leyval, C.4
  • 11
    • 0036089919 scopus 로고    scopus 로고
    • Utilization of mixtures of polycyclic aromatic hydrocarbons by bacteria isolated from contaminated sediment
    • Dean-Ross, D., J. Moody, and C. E. Cerniglia. 2002. Utilization of mixtures of polycyclic aromatic hydrocarbons by bacteria isolated from contaminated sediment. FEMS Microbiol. Ecol. 41:1-7.
    • (2002) FEMS Microbiol. Ecol. , vol.41 , pp. 1-7
    • Dean-Ross, D.1    Moody, J.2    Cerniglia, C.E.3
  • 12
    • 34547674725 scopus 로고    scopus 로고
    • Comparative quantitative prevalence of mycobacteria and functionally abundant nida, nahAc, and nagAc dioxygenase genes in coal tar contaminated sediments
    • DeBruyn, J. M., C. S. Chewning, and G. S. Sayler. 2007. Comparative quantitative prevalence of mycobacteria and functionally abundant nida, nahAc, and nagAc dioxygenase genes in coal tar contaminated sediments. Environ. Sci. Technol. 41:5426-5432.
    • (2007) Environ. Sci. Technol. , vol.41 , pp. 5426-5432
    • Debruyn, J.M.1    Chewning, C.S.2    Sayler, G.S.3
  • 13
    • 34548548565 scopus 로고    scopus 로고
    • Simultaneous catabolite repression between glucose and toluene metabolism in Pseudomonas putida is channeled through different signaling pathways
    • del Castillo, T., and J. L. Ramos. 2007. Simultaneous catabolite repression between glucose and toluene metabolism in Pseudomonas putida is channeled through different signaling pathways. J. Bacteriol. 189:6602-6610.
    • (2007) J. Bacteriol. , vol.189 , pp. 6602-6610
    • Del Castillo, T.1    Ramos, J.L.2
  • 14
    • 3242764705 scopus 로고    scopus 로고
    • Abundance of dioxygenase genes similar to Ralstonia sp. strain U2 nagAc is correlated with naphthalene concentrations in coal tar-contaminated freshwater sediments
    • Dionisi, H. M., C. S. Chewning, K. H. Morgan, F. M. Menn, J. P. Easter, and G. S. Sayler. 2004. Abundance of dioxygenase genes similar to Ralstonia sp. strain U2 nagAc is correlated with naphthalene concentrations in coal tar-contaminated freshwater sediments. Appl. Environ. Microbiol. 70:3988-3995.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 3988-3995
    • Dionisi, H.M.1    Chewning, C.S.2    Morgan, K.H.3    Menn, F.M.4    Easter, J.P.5    Sayler, G.S.6
  • 16
    • 33748353399 scopus 로고    scopus 로고
    • Annually reoccurring bacterial communities are predictable from ocean conditions
    • Fuhrman, J. A., I. Hewson, M. S. Schwalbach, J. A. Steele, et al. 2006. Annually reoccurring bacterial communities are predictable from ocean conditions. Proc. Natl. Acad. Sci. USA 103:13104-13109.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 13104-13109
    • Fuhrman, J.A.1    Hewson, I.2    Schwalbach, M.S.3    Steele, J.A.4
  • 19
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good, I. L. 1953. The population frequencies of species and the estimation of population parameters. Biometrika 40:237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.L.1
  • 20
    • 70349937597 scopus 로고    scopus 로고
    • Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comamonas testosteroni GZ39
    • Goyal, A. K., and G. J. Zylstra. 1996. Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comamonas testosteroni GZ39. Appl. Environ. Microbiol. 3:481-489.
    • (1996) Appl. Environ. Microbiol. , vol.3 , pp. 481-489
    • Goyal, A.K.1    Zylstra, G.J.2
  • 21
    • 0028805170 scopus 로고
    • Maintenance and induction of naphthalene degradation activity in Pseudomonas putida and an Alcaligenes sp. under different culture conditions
    • Guerin, W. F., and S. A. Boyd. 1995. Maintenance and induction of naphthalene degradation activity in Pseudomonas putida and an Alcaligenes sp. under different culture conditions. Appl. Environ. Microbiol. 61:4061-4068.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 4061-4068
    • Guerin, W.F.1    Boyd, S.A.2
  • 22
    • 0037506334 scopus 로고    scopus 로고
    • Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria
    • Habe, H., and T. Omori. 2003. Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria. Biosci. Biotechnol. Biochem. 67:225-243.
    • (2003) Biosci. Biotechnol. Biochem. , vol.67 , pp. 225-243
    • Habe, H.1    Omori, T.2
  • 23
    • 0026762358 scopus 로고
    • Specific and quantitative assessment of naphthalene and salicylate bioavailability by using a bioluminescent catabolic reporter bacterium
    • Heitzer, A., O. F. Webb, J. E. Thonnard, and G. S. Sayler. 1992. Specific and quantitative assessment of naphthalene and salicylate bioavailability by using a bioluminescent catabolic reporter bacterium. Appl. Environ. Microbiol. 58:1839-1846.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 1839-1846
    • Heitzer, A.1    Webb, O.F.2    Thonnard, J.E.3    Sayler, G.S.4
  • 25
    • 10444268971 scopus 로고    scopus 로고
    • In situ expression of nifD in Geobacteraceae in subsurface sediments
    • Holmes, D. E., K. P. Nevin, and D. R. Lovley. 2004. In situ expression of nifD in Geobacteraceae in subsurface sediments. Appl. Environ. Microbiol. 70:7251-7259.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 7251-7259
    • Holmes, D.E.1    Nevin, K.P.2    Lovley, D.R.3
  • 26
    • 58149354855 scopus 로고    scopus 로고
    • Resolving genetic functions within microbial populations: In situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell raman-fluorescence in situ hybridization
    • Huang, W. E., A. Ferguson, A. C. Singer, K. Lawson, I. P. Thompson, R. M. Kalin, et al. 2009. Resolving genetic functions within microbial populations: in situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell raman-fluorescence in situ hybridization. Appl. Environ. Microbiol. 75:234-241.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 234-241
    • Huang, W.E.1    Ferguson, A.2    Singer, A.C.3    Lawson, K.4    Thompson, I.P.5    Kalin, R.M.6
  • 27
    • 25144518340 scopus 로고    scopus 로고
    • Global physiological analysis of carbon- And energy-limited growing Escherichia coli confirms a high degree of catabolic flexibility and preparedness for mixed substrate utilization
    • Ihssen, J., and T. Egli. 2005. Global physiological analysis of carbon- and energy-limited growing Escherichia coli confirms a high degree of catabolic flexibility and preparedness for mixed substrate utilization. Environ. Microbiol. 7:1568-1581.
    • (2005) Environ. Microbiol. , vol.7 , pp. 1568-1581
    • Ihssen, J.1    Egli, T.2
  • 28
    • 0345686678 scopus 로고    scopus 로고
    • Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment
    • Jeon, C. O., P. Padmanabhan, C. Derito, J. R. Snape, and E. L. Madsen. 2003. Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment. Proc. Natl. Acad. Sci. USA 100:13591-13596.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 13591-13596
    • Jeon, C.O.1    Padmanabhan, P.2    Derito, C.3    Snape, J.R.4    Madsen, E.L.5
  • 29
    • 0842345383 scopus 로고    scopus 로고
    • Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene- Contaminated sediment
    • Jeon, C. O., W. Park, W. C. Ghiorse, and E. L. Madsen. 2004. Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene- contaminated sediment. Int. J. Syst. Evol. Microbiol. 54:93-97.
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 93-97
    • Jeon, C.O.1    Park, W.2    Ghiorse, W.C.3    Madsen, E.L.4
  • 30
    • 0028120636 scopus 로고
    • Rapid construction of deleted DNA fragments for use as internal standards in competitive PCR
    • Jin, C. F., M. Mata, and D. J. Fink. 1994. Rapid construction of deleted DNA fragments for use as internal standards in competitive PCR. Genome Res. 3:252-255. (Pubitemid 2049444)
    • (1994) Genome Research , vol.3 , Issue.4 , pp. 252-255
    • Jin Chuan, F.1    Mata, M.2    Fink, D.J.3
  • 31
    • 16644396090 scopus 로고    scopus 로고
    • Principles of microbial PAH-degradation in soil
    • Johnsen, A. R., L. Y. Wick, and. H. Harms. 2005. Principles of microbial PAH-degradation in soil. Environ. Pollut. 133:71-84.
    • (2005) Environ. Pollut. , vol.133 , pp. 71-84
    • Johnsen, A.R.1    Wick, L.Y.2    Harms, H.3
  • 32
    • 0025241859 scopus 로고
    • Groundwater transport of hydrophobic organic compounds in the presence of dissolved organic matter
    • Kan, A. T., and M. B. Tomson. 1990. Groundwater transport of hydrophobic organic compounds in the presence of dissolved organic matter. Environ. Toxicol. Chem. 9:253-263.
    • (1990) Environ. Toxicol. Chem. , vol.9 , pp. 253-263
    • Kan, A.T.1    Tomson, M.B.2
  • 33
    • 0842324405 scopus 로고    scopus 로고
    • Bacterial diversity in aquatic and other environments: What 16S rDNA libraries can tell us
    • Kemp, P. F., and J. Y. Aller. 2004. Bacterial diversity in aquatic and other environments: what 16S rDNA libraries can tell us. FEMS Microbiol. Ecol. 47:161-177.
    • (2004) FEMS Microbiol. Ecol. , vol.47 , pp. 161-177
    • Kemp, P.F.1    Aller, J.Y.2
  • 34
    • 0028117074 scopus 로고
    • Use of fluorochromes for direct enumeration of total bacteria in environmental samples
    • Kepner, R. L., and J. R. Pratt. 1994. Use of fluorochromes for direct enumeration of total bacteria in environmental samples. Microbiol. Rev. 58:603-615.
    • (1994) Microbiol. Rev. , vol.58 , pp. 603-615
    • Kepner, R.L.1    Pratt, J.R.2
  • 35
    • 85054255383 scopus 로고    scopus 로고
    • Life in the slow lane: Activities of microorganisms in the subsurface
    • P. S. Amy and D. L. Haldeman (ed.) CRC Press, Inc., Boca Raton, FL
    • Kieft, T. L., and T. J. Phelps. 1997. Life in the slow lane: activities of microorganisms in the subsurface, p. 137-163. In P. S. Amy and D. L. Haldeman (ed.), Microbiology of the terrestrial subsurface. CRC Press, Inc., Boca Raton, FL.
    • (1997) Microbiology of the Terrestrial Subsurface , pp. 137-163
    • Kieft, T.L.1    Phelps, T.J.2
  • 36
    • 0031719199 scopus 로고    scopus 로고
    • Growth kinetics of suspended microbial cells: From single-substrate- controlled growth to mixed-substrate kinetics
    • Kovarova-Kovar, K., and T. Egli. 1998. Growth kinetics of suspended microbial cells: from single-substrate-controlled growth to mixed-substrate kinetics. Microbiol. Mol. Biol. Rev. 62:646-666.
    • (1998) Microbiol. Mol. Biol. Rev. , vol.62 , pp. 646-666
    • Kovarova-Kovar, K.1    Egli, T.2
  • 38
    • 0034019871 scopus 로고    scopus 로고
    • Quantification of phnAc and nahAc in contaminated New Zealand soils by competitive PCR
    • Laurie, A. D., and G. Lloyd-Jones. 2000. Quantification of phnAc and nahAc in contaminated New Zealand soils by competitive PCR. Appl. Environ. Microbiol. 66:1814-1817.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1814-1817
    • Laurie, A.D.1    Lloyd-Jones, G.2
  • 39
    • 0030009792 scopus 로고    scopus 로고
    • Kinetics of the simultaneous utilization of sugar mixtures by Escherichia coli in continuous culture
    • Lendenmann, U., M. Snozzi, and T. Egli. 1996. Kinetics of the simultaneous utilization of sugar mixtures by Escherichia coli in continuous culture. Appl. Environ. Microbiol. 62:1493-1499.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1493-1499
    • Lendenmann, U.1    Snozzi, M.2    Egli, T.3
  • 40
    • 6944247410 scopus 로고    scopus 로고
    • Occurrence and phylogenetic diversity of Sphingomonas strains in soils contaminated with polycyclic aromatic hydrocarbons
    • Leys, N. M. E. J., A. Ryngaert, L. Bastiaens, E. Verstraete, E. M. Top, and D. Springael. 2004. Occurrence and phylogenetic diversity of Sphingomonas strains in soils contaminated with polycyclic aromatic hydrocarbons. Appl. Environ. Microbiol. 70:1944-1955.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 1944-1955
    • Leys, N.M.E.J.1    Ryngaert, A.2    Bastiaens, L.3    Verstraete, E.4    Top, E.M.5    Springael, D.6
  • 41
    • 38349106816 scopus 로고    scopus 로고
    • Simultaneous biodegradation of creosote-polycyclic aromatic hydrocarbons by a pyrenedegrading Mycobacterium
    • Lopez, Z., J. Vila, J. J. Ortega-Calvo, and M. Grifoll. 2008. Simultaneous biodegradation of creosote-polycyclic aromatic hydrocarbons by a pyrenedegrading Mycobacterium. Appl. Microbiol. Biotechnol. 78:165-172.
    • (2008) Appl. Microbiol. Biotechnol. , vol.78 , pp. 165-172
    • Lopez, Z.1    Vila, J.2    Ortega-Calvo, J.J.3    Grifoll, M.4
  • 42
    • 43149111846 scopus 로고    scopus 로고
    • Novel aromatic ring-hydroxylating dioxygenase genes from coastal marine sediments of Patagonia
    • DOI 10.1186/1471-2180-8-50
    • Lozada, M., J. Mercadal, L. Guerrero, W. Di Marzio, M. Ferrero, and H. Dionisi. 2008. Novel aromatic ring-hydroxylating dioxygenase genes from coastal marine sediments of Patagonia. BMC Microbiol. 8:50. doi:10.1186/1471-2180-8-50. (Pubitemid 351641902)
    • (2008) BMC Microbiology , vol.8 , pp. 50
    • Lozada, M.1    Riva Mercadal, J.P.2    Guerrero, L.D.3    Di Marzio, W.D.4    Ferrero, M.A.5    Dionisi, H.M.6
  • 43
    • 0025918927 scopus 로고
    • In situ biodegradation: Microbiological patterns in a contaminated aquifer
    • Madsen, E. L., J. L. Sinclair, and W. C. Ghiorse. 1991. In situ biodegradation: microbiological patterns in a contaminated aquifer. Science 252:830-833.
    • (1991) Science , vol.252 , pp. 830-833
    • Madsen, E.L.1    Sinclair, J.L.2    Ghiorse, W.C.3
  • 44
    • 0035000850 scopus 로고    scopus 로고
    • Insights into the genetic diversity of initial dioxygenases from PAH-degrading bacteria
    • Moser, R., and U. Stahl. 2001. Insights into the genetic diversity of initial dioxygenases from PAH-degrading bacteria. Appl. Microbiol. Biotechnol. 55:609-618.
    • (2001) Appl. Microbiol. Biotechnol. , vol.55 , pp. 609-618
    • Moser, R.1    Stahl, U.2
  • 46
    • 0003773972 scopus 로고    scopus 로고
    • National Research Council. National Academy Press, Washington, DC
    • National Research Council. 2000. Natural attenuation for groundwater remediation. National Academy Press, Washington, DC.
    • (2000) Natural Attenuation for Groundwater Remediation
  • 47
    • 0003597396 scopus 로고
    • National Research Council National Academy Press, Washington, DC
    • National Research Council. 1993. In situ bioremediation: when does it work? National Academy Press, Washington, DC.
    • (1993) In Situ Bioremediation: When Does It Work?
  • 48
    • 68949146118 scopus 로고    scopus 로고
    • Monitored natural attenuation of manufactured gas plant tar mono- And polycyclic aromatic hydrocarbons in ground water: A 14-year field study
    • Neuhauser, E. F., J. A. Ripp, N. A. Azzolina, E. L. Madsen, D. M. Mauro, and T. Taylor. 2009. Monitored natural attenuation of manufactured gas plant tar mono- and polycyclic aromatic hydrocarbons in ground water: a 14-year field study. Groundwater Monit. Remed. 29:66-76.
    • (2009) Groundwater Monit. Remed. , vol.29 , pp. 66-76
    • Neuhauser, E.F.1    Ripp, J.A.2    Azzolina, N.A.3    Madsen, E.L.4    Mauro, D.M.5    Taylor, T.6
  • 49
    • 33745132697 scopus 로고    scopus 로고
    • Microbial dioxygenase gene population shifts during polycyclic aromatic hydrocarbon biodegradation
    • Ní Chadhain, S. M., R. S. Norman, K. V. Pesce, J. J. Kukor, and G. J. Zylstra. 2006. Microbial dioxygenase gene population shifts during polycyclic aromatic hydrocarbon biodegradation. Appl. Environ. Microbiol. 72:4078-4087.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 4078-4087
    • Ní Chadhain, S.M.1    Norman, R.S.2    Pesce, K.V.3    Kukor, J.J.4    Zylstra, G.J.5
  • 50
    • 4143121402 scopus 로고    scopus 로고
    • Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate
    • North, N. N., S. L. Dollhopf, L. Petrie, J. D. Istok, D. L. Balkwill, and J. E. Kostka. 2004. Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate. Appl. Environ. Microbiol. 70:4911-4920.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 4911-4920
    • North, N.N.1    Dollhopf, S.L.2    Petrie, L.3    Istok, J.D.4    Balkwill, D.L.5    Kostka, J.E.6
  • 51
    • 33845383312 scopus 로고    scopus 로고
    • A targeted real-time PCR assay for studying naphthalene degradation in the environment
    • Nyyssönen, M., R. Piskonen, and M. Itävaara. 2006. A targeted real-time PCR assay for studying naphthalene degradation in the environment. Microb. Ecol. 52:533-543.
    • (2006) Microb. Ecol. , vol.52 , pp. 533-543
    • Nyyssönen, M.1    Piskonen, R.2    Itävaara, M.3
  • 53
    • 66649089244 scopus 로고    scopus 로고
    • Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
    • in press
    • Poretsky, R. S., I. Hewson, S. Sun, A. E. Allen, J. P. Zehr, and M. A. Moran. Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre. Environ. Microbiol., in press.
    • Environ. Microbiol.
    • Poretsky, R.S.1    Hewson, I.2    Sun, S.3    Allen, A.E.4    Zehr, J.P.5    Moran, M.A.6
  • 55
    • 3242773890 scopus 로고    scopus 로고
    • Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays
    • Rhee, S. K., X. Liu, L. Wu, S. C. Chong, X. Wan, and J. Zhou. 2004. Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays. Appl. Environ. Microbiol. 70:4303-4317.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 4303-4317
    • Rhee, S.K.1    Liu, X.2    Wu, L.3    Chong, S.C.4    Wan, X.5    Zhou, J.6
  • 56
    • 35348883865 scopus 로고    scopus 로고
    • Mineralization of PAHs in coal-tar impacted aquifer sediments and associated microbial community structure investigated with FISH
    • Rogers, S. W., S. K. Ong, and T. B. Moorman. 2007. Mineralization of PAHs in coal-tar impacted aquifer sediments and associated microbial community structure investigated with FISH. Chemosphere 69:1563-1573.
    • (2007) Chemosphere , vol.69 , pp. 1563-1573
    • Rogers, S.W.1    Ong, S.K.2    Moorman, T.B.3
  • 57
    • 58149189305 scopus 로고    scopus 로고
    • Functional gene abundances (nahAc, alkB, xylE) in the assessment of the efficacy of bioremediation
    • Salminen, J., P. Tuomi, and K. Jorgensen. 2008. Functional gene abundances (nahAc, alkB, xylE) in the assessment of the efficacy of bioremediation. Appl. Biochem. Biotechnol. 151:638-652.
    • (2008) Appl. Biochem. Biotechnol. , vol.151 , pp. 638-652
    • Salminen, J.1    Tuomi, P.2    Jorgensen, K.3
  • 58
    • 0036605098 scopus 로고    scopus 로고
    • Polycyclic aromatic hydrocarbons: Environmental pollution and bioremediation
    • DOI 10.1016/S0167-7799(02)01943-1, PII S0167779902019431
    • Samanta, S. K., O. V. Singh, and R. K. Jain. 2002. Polycyclic aromatic hydrocarbons: environmental pollution and bioremediation. Trends Biotechnol. 20:243-248. (Pubitemid 34451059)
    • (2002) Trends in Biotechnology , vol.20 , Issue.6 , pp. 243-248
    • Samanta, S.K.1    Singh, O.V.2    Jain, R.K.3
  • 59
    • 0027133938 scopus 로고
    • Molecular diagnostics of polycyclic aromatic hydrocarbon biodegradation in manufactured gas plant soils
    • Sanseverino, J., C. Werner, J. Fleming, B. Applegate, J. M. King, and G. S. Sayler. 1993. Molecular diagnostics of polycyclic aromatic hydrocarbon biodegradation in manufactured gas plant soils. Biodegradation 4:303-321. (Pubitemid 2083993)
    • (1993) Biodegradation , vol.4 , Issue.4 , pp. 303-321
    • Sanseverino, J.1    Werner, C.2    Fleming, J.3    Applegate, B.4    King, J.M.H.5    Sayler, G.S.6
  • 61
    • 0020660931 scopus 로고
    • Adaptation of natural microbial communities to degradation of xenobiotic compounds: Effects of concentration, exposure time, inoculum, and chemical structure
    • Spain, J. C., and P. A. Van Veld. 1983. Adaptation of natural microbial communities to degradation of xenobiotic compounds: effects of concentration, exposure time, inoculum, and chemical structure. Appl. Environ. Microbiol. 45:42-435.
    • (1983) Appl. Environ. Microbiol. , vol.45 , pp. 42-435
    • Spain, J.C.1    Van Veld, P.A.2
  • 62
    • 34547748431 scopus 로고    scopus 로고
    • Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds
    • Suenaga, H., T. Ohnuki, and K. Miyazaki. 2007. Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds. Environ. Microbiol. 9:2289-2297.
    • (2007) Environ. Microbiol. , vol.9 , pp. 2289-2297
    • Suenaga, H.1    Ohnuki, T.2    Miyazaki, K.3
  • 63
    • 12544257286 scopus 로고    scopus 로고
    • Variations in the abundance and identity of class II aromatic ring-hydroxylating dioxygenase genes in groundwater at an aromatic hydrocarbon-contaminated site
    • Taylor, P. M., and P. H. Janssen. 2005. Variations in the abundance and identity of class II aromatic ring-hydroxylating dioxygenase genes in groundwater at an aromatic hydrocarbon-contaminated site. Environ. Microbiol. 7:140-146.
    • (2005) Environ. Microbiol. , vol.7 , pp. 140-146
    • Taylor, P.M.1    Janssen, P.H.2
  • 64
    • 4544275675 scopus 로고    scopus 로고
    • Bacterial transcriptional regulators for degradation pathways of aromatic compounds
    • Tropel, D., and J. R. van der Meer. 2004. Bacterial transcriptional regulators for degradation pathways of aromatic compounds. Microbiol. Mol. Biol. Rev. 68:474-500.
    • (2004) Microbiol. Mol. Biol. Rev. , vol.68 , pp. 474-500
    • Tropel, D.1    Van Der Meer, J.R.2
  • 65
    • 10644270981 scopus 로고    scopus 로고
    • The abundance of nahAc genes correlates with the C-14-naphthalene mineralization potential in petroleum hydrocarbon-contaminated oxic soil layers
    • Tuomi, P. M., J. M. Salminen, and K. S. Jørgensen. 2004. The abundance of nahAc genes correlates with the C-14-naphthalene mineralization potential in petroleum hydrocarbon-contaminated oxic soil layers. FEMS Microbiol. Ecol. 51:99-107.
    • (2004) FEMS Microbiol. Ecol. , vol.51 , pp. 99-107
    • Tuomi, P.M.1    Salminen, J.M.2    Jørgensen, K.S.3
  • 66
    • 33644837639 scopus 로고    scopus 로고
    • The m-xylene biodegradation capacity of Pseudomonas putida mt-2 is submitted to adaptation to abiotic stresses: Evidence from expression profiling of xyl genes
    • DOI 10.1111/j.1462-2920.2005.00936.x
    • Velázquez, F., V. de Lorenzo, and M. Valls. 2006. The m-xylene biodegradation capacity of Pseudomonas putida mt-2 is submitted to adaptation to abiotic stresses: evidence from expression profiling of xyl genes. Environ. Microbiol. 8:591-602. (Pubitemid 43363316)
    • (2006) Environmental Microbiology , vol.8 , Issue.4 , pp. 591-602
    • Velazquez, F.1    De Lorenzo, V.2    Valls, M.3
  • 67
    • 0142136126 scopus 로고    scopus 로고
    • Characterization of multiple-substrate utilization by anthracene-degrading Mycobacterium frederiksbergense LB501T
    • Wick, L. Y., N. Pasche, S. M. Bernasconi, O. Pelz, and H. Harms. 2003. Characterization of multiple-substrate utilization by anthracene-degrading Mycobacterium frederiksbergense LB501T. Appl. Environ. Microbiol. 69:6133-6142.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 6133-6142
    • Wick, L.Y.1    Pasche, N.2    Bernasconi, S.M.3    Pelz, O.4    Harms, H.5
  • 68
    • 0032906465 scopus 로고    scopus 로고
    • In situ, real-time catabolic gene expression: Extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater
    • Wilson, M. S., C. Bakermans, and E. L. Madsen. 1999. In situ, real-time catabolic gene expression: extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater. Appl. Environ. Microbiol. 65:80-87.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 80-87
    • Wilson, M.S.1    Bakermans, C.2    Madsen, E.L.3
  • 69
    • 0037391355 scopus 로고    scopus 로고
    • Horizontal transfer of phnAc dioxygenase genes within one of two phenotypically and genotypically distinctive naphthalene-degrading guilds from adjacent soil environments
    • Wilson, M. S., J. B. Herrick, C. O. Jeon, D. E. Hinman, and E. L. Madsen. 2003. Horizontal transfer of phnAc dioxygenase genes within one of two phenotypically and genotypically distinctive naphthalene-degrading guilds from adjacent soil environments. Appl. Environ. Microbiol. 69:2172-2181.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 2172-2181
    • Wilson, M.S.1    Herrick, J.B.2    Jeon, C.O.3    Hinman, D.E.4    Madsen, E.L.5
  • 70
    • 73449142777 scopus 로고    scopus 로고
    • Subsurface ecosystem resilience: Long-term attenuation of subsurface contaminants supports a dynamic microbial community
    • in press
    • Yagi, J. M., E. F. Neuhauser, J. A. Ripp, D. M. Mauro, and E. L. Madsen. Subsurface ecosystem resilience: long-term attenuation of subsurface contaminants supports a dynamic microbial community. ISME J., in press.
    • ISME J.
    • Yagi, J.M.1    Neuhauser, E.F.2    Ripp, J.A.3    Mauro, D.M.4    Madsen, E.L.5
  • 71
    • 0034554794 scopus 로고    scopus 로고
    • Novel forms of ring-hydroxylating dioxygenases are widespread in pristine and contaminated soils
    • Yeates, C., A. Holmes, and M. Gillings. 2000. Novel forms of ring-hydroxylating dioxygenases are widespread in pristine and contaminated soils. Environ. Microbiol. 2:644-653.
    • (2000) Environ. Microbiol. , vol.2 , pp. 644-653
    • Yeates, C.1    Holmes, A.2    Gillings, M.3
  • 72
    • 0023705037 scopus 로고
    • Genetics of naphthalene catabolism in pseudomonads
    • Yen, K. M., and C. M. Serdar. 1988. Genetics of naphthalene catabolism in pseudomonads. Crit. Rev. Microbiol. 15:247-268.
    • (1988) Crit. Rev. Microbiol. , vol.15 , pp. 247-268
    • Yen, K.M.1    Serdar, C.M.2
  • 73
    • 0035167509 scopus 로고    scopus 로고
    • Nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism
    • Zhou, N. Y., S. L. Fuenmayor, and P. A. Williams. 2001. nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism. J. Bacteriol. 183:700-708.
    • (2001) J. Bacteriol. , vol.183 , pp. 700-708
    • Zhou, N.Y.1    Fuenmayor, S.L.2    Williams, P.A.3


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