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Volumn 5, Issue , 2004, Pages

TETRA: A web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL PROCESS; CENTRAL PROBLEMS; CORRELATION COEFFICIENT; DISCRIMINATORY POWER; FREQUENCY ANALYSIS; GENETIC POTENTIAL; GENOMIC FRAGMENTS; MICROBIAL COMMUNITIES;

EID: 13244253777     PISSN: 14712105     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2105-5-163     Document Type: Article
Times cited : (295)

References (24)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann RI, Ludwig W, Schleifer KH: Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 1995, 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 10
    • 0029060923 scopus 로고
    • Dinucleotide relative abundance extremes: A genomic signature
    • Karlin S, Burge C: Dinucleotide relative abundance extremes: a genomic signature. Trends Genet 1995, 11: 83-290.
    • (1995) Trends Genet. , vol.11 , pp. 283-290
    • Karlin, S.1    Burge, C.2
  • 11
    • 0032173634 scopus 로고    scopus 로고
    • Global dinucleotide signatures and analysis of genomic heterogeneity
    • Karlin S: Global dinucleotide signatures and analysis of genomic heterogeneity. Curr Opin Microbiol 1998, 1: 98-610.
    • (1998) Curr. Opin. Microbiol. , vol.1 , pp. 598-610
    • Karlin, S.1
  • 12
  • 13
    • 0032582395 scopus 로고    scopus 로고
    • Genes from nine genomes are separated into their organisms in the dinucleotide composition space
    • Nakashima H, Ota M, Nishikawa K, Ooi T: Genes from nine genomes are separated into their organisms in the dinucleotide composition space. DNA Res 1998, 5:251-259.
    • (1998) DNA Res. , vol.5 , pp. 251-259
    • Nakashima, H.1    Ota, M.2    Nishikawa, K.3    Ooi, T.4
  • 14
    • 0035049521 scopus 로고    scopus 로고
    • Genome-scale compositional comparisons in eukaryotes
    • Gentles AJ, Karlin S: Genome-scale compositional comparisons in eukaryotes. Genome Res 2001, 11:540-546.
    • (2001) Genome Res. , vol.11 , pp. 540-546
    • Gentles, A.J.1    Karlin, S.2
  • 16
    • 0032823783 scopus 로고    scopus 로고
    • Genomic signature: Characterization and classification of species assessed by chaos game representation of sequences
    • Deschavanne PJ, Giron A, Vilain J, Fagot G, Fertil B: Genomic signature: characterization and classification of species assessed by chaos game representation of sequences. Mol Biol Evol 1999, 16:1391-1399.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1391-1399
    • Deschavanne, P.J.1    Giron, A.2    Vilain, J.3    Fagot, G.4    Fertil, B.5
  • 17
    • 0027300694 scopus 로고
    • Nucleotide, dinucleotide and trinucleotide frequencies explain patterns observed in chaos game representations of DNA sequences
    • Goldman N: Nucleotide, dinucleotide and trinucleotide frequencies explain patterns observed in chaos game representations of DNA sequences. Nucleic Acids Res 1993, 21:2487-2491.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 2487-2491
    • Goldman, N.1
  • 18
    • 0034887748 scopus 로고    scopus 로고
    • Capturing whole-genome characteristics in short sequences using a naive Bayesian classifier
    • Sandberg R, Winberg G, Branden CI, Kaske A, Ernberg I, Coster J: Capturing whole-genome characteristics in short sequences using a naive Bayesian classifier. Genome Res 2001, 11:1404-1409.
    • (2001) Genome Res. , vol.11 , pp. 1404-1409
    • Sandberg, R.1    Winberg, G.2    Branden, C.I.3    Kaske, A.4    Ernberg, I.5    Coster, J.6
  • 19
    • 0037315735 scopus 로고    scopus 로고
    • Evolutionary implications of microbial genome tetranucleotide frequency biases
    • Pride DT, Meinersmann RJ, Wassenaar TM, Blaser MJ: Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Res 2003, 13:145-158.
    • (2003) Genome Res. , vol.13 , pp. 145-158
    • Pride, D.T.1    Meinersmann, R.J.2    Wassenaar, T.M.3    Blaser, M.J.4
  • 20
    • 0029365207 scopus 로고
    • Exceptional motifs in different Markov chain models for a statistical analysis of DNA sequences
    • Schbath S, Prum B, de Turckheim E: Exceptional motifs in different Markov chain models for a statistical analysis of DNA sequences. J Comput Biol 1995, 2:417-437.
    • (1995) J. Comput. Biol. , vol.2 , pp. 417-437
    • Schbath, S.1    Prum, B.2    de Turckheim, E.3
  • 21
    • 0030839806 scopus 로고    scopus 로고
    • An efficient statistic to detect over- and under-represented words in DNA sequences
    • Schbath S: An efficient statistic to detect over- and under-represented words in DNA sequences. J Comput Biol 1997, 4:189-192.
    • (1997) J. Comput. Biol. , vol.4 , pp. 189-192
    • Schbath, S.1
  • 22
    • 84874646051 scopus 로고    scopus 로고
    • TETRA web-service
    • TETRA web-service [http://www.megx.net/tetra/]
  • 23
    • 84874663083 scopus 로고    scopus 로고
    • TETRA standalone program
    • TETRA standalone program [http://www.megx.net/tetra/solo/TETRA.zip]
  • 24
    • 84874666416 scopus 로고    scopus 로고
    • PHYLIP homepage
    • PHYLIP homepage [http://evolution.genetics.washington.edu/phylip.html]


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.