메뉴 건너뛰기




Volumn 236, Issue 2, 2004, Pages 249-256

Global distribution of nearly identical phage-encoded DNA sequences

Author keywords

Distribution; DNA polymerase; Environment; Phage; T7 like Podophage; Ubiquitous sequence

Indexed keywords

DNA POLYMERASE;

EID: 3142570537     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2004.05.042     Document Type: Article
Times cited : (173)

References (33)
  • 1
    • 0035007418 scopus 로고    scopus 로고
    • Frequency of morphological phage descriptions in the year 2000
    • Ackermann H.W. Frequency of morphological phage descriptions in the year 2000. Arch. Virol. 146:2001;843-857
    • (2001) Arch. Virol. , vol.146 , pp. 843-857
    • Ackermann, H.W.1
  • 2
    • 0034053843 scopus 로고    scopus 로고
    • Virioplankton: Viruses in aquatic ecosystems
    • Wommack K., Colwell R. Virioplankton: viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64:2000;69-114
    • (2000) Microbiol. Mol. Biol. Rev. , vol.64 , pp. 69-114
    • Wommack, K.1    Colwell, R.2
  • 3
    • 0027338848 scopus 로고
    • Native marine bacteriophage
    • Borsheim K.Y. Native marine bacteriophage. FEMS Microbial. Ecol. 102:1993;141-159
    • (1993) FEMS Microbial. Ecol. , vol.102 , pp. 141-159
    • Borsheim, K.Y.1
  • 5
    • 0032959665 scopus 로고    scopus 로고
    • Population dynamics of Chesapeake Bay virioplankton: Total community analysis by pulsed-field gel electrophoresis
    • Wommack K.E., Ravel J., Hill R.T., Chun J.S., Colwell R.R. Population dynamics of Chesapeake Bay virioplankton: total community analysis by pulsed-field gel electrophoresis. Appl. Environ. Microbiol. 65:1999;231-240
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 231-240
    • Wommack, K.E.1    Ravel, J.2    Hill, R.T.3    Chun, J.S.4    Colwell, R.R.5
  • 6
    • 0034517760 scopus 로고    scopus 로고
    • Genome size distributions indicate variability and similarities among marine viral assemblages from diverse environments
    • Steward G., Montiel J., Azam F. Genome size distributions indicate variability and similarities among marine viral assemblages from diverse environments. Limnol. Oceanogr. 45:2000;1697-1706
    • (2000) Limnol. Oceanogr. , vol.45 , pp. 1697-1706
    • Steward, G.1    Montiel, J.2    Azam, F.3
  • 7
    • 0003761043 scopus 로고
    • F.A. Murphy, C.M. Fauquet, D.H.L. Bishop, S.A. Ghabrial, A.W. Jarvis, G.P. Martelli, M.A. Mayo, Summers M.D. New York: Springer
    • Murphy F.A., Fauquet C.M., Bishop D.H.L., Ghabrial S.A., Jarvis A.W., Martelli G.P., Mayo M.A., Summers M.D. Virus Taxonomy: Sixth Report of the International Committee on Taxonomy of Viruses. Vol. Suppl. 10:1995;Springer, New York
    • (1995) Virus Taxonomy: Sixth Report of the International Committee on Taxonomy of Viruses , vol.10
  • 8
    • 0036330981 scopus 로고    scopus 로고
    • The phage proteomic tree: A genome based taxonomy for phage
    • Rohwer F., Edwards R. The phage proteomic tree: a genome based taxonomy for phage. J. Bacteriol. 184:2002;4529-4535
    • (2002) J. Bacteriol. , vol.184 , pp. 4529-4535
    • Rohwer, F.1    Edwards, R.2
  • 9
    • 0001679973 scopus 로고    scopus 로고
    • Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria
    • Noble R.T., Fuhrman J.A. Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria. Aquat. Microb. Ecol. 14:1998;113-118
    • (1998) Aquat. Microb. Ecol. , vol.14 , pp. 113-118
    • Noble, R.T.1    Fuhrman, J.A.2
  • 10
    • 0011140369 scopus 로고
    • Molecular Cloning: A Laboratory Manual
    • Cold Spring Harbor Laboratory Press
    • Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning: A Laboratory Manual. 2nd Edn. 1989;Cold Spring Harbor Laboratory Press
    • (1989) 2nd Edn.
    • Sambrook, J.1    Fritsch, E.F.2    Maniatis, T.3
  • 11
    • 0034890481 scopus 로고    scopus 로고
    • Diversity of bacteria associated with the Caribbean coral Montastraea franksi
    • Rohwer F., Breitbart M., Jara J., Azam F., Knowlton N. Diversity of bacteria associated with the Caribbean coral Montastraea franksi. Coral. Reefs. 20:2001;85-95
    • (2001) Coral. Reefs , vol.20 , pp. 85-95
    • Rohwer, F.1    Breitbart, M.2    Jara, J.3    Azam, F.4    Knowlton, N.5
  • 14
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The Clustal X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:1997;4876-4882
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 15
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 17
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:2003;3406-3415
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 19
    • 0030613188 scopus 로고    scopus 로고
    • A simple method for enumerating bacteriophages in soil
    • Yin X., Zeph L., Stotzky G. A simple method for enumerating bacteriophages in soil. Can. J. Microbiol. 43:1997;461-466
    • (1997) Can. J. Microbiol. , vol.43 , pp. 461-466
    • Yin, X.1    Zeph, L.2    Stotzky, G.3
  • 20
    • 0024475207 scopus 로고
    • High abundance of viruses found in aquatic environments
    • Bergh O., Borsheim K.Y., Bratbak G., Heldal M. High abundance of viruses found in aquatic environments. Nature. 340:1989;467-468
    • (1989) Nature , vol.340 , pp. 467-468
    • Bergh, O.1    Borsheim, K.Y.2    Bratbak, G.3    Heldal, M.4
  • 22
    • 0035175333 scopus 로고    scopus 로고
    • Virus-like particle distribution and abundance in sediments and overlying waters along eutrophication gradients in two subtropical estuaries
    • Hewson I., O'Neil J.M., Fuhrman J.A., Dennison W.C. Virus-like particle distribution and abundance in sediments and overlying waters along eutrophication gradients in two subtropical estuaries. Limnol. Oceanogr. 46:2001;1734-1746
    • (2001) Limnol. Oceanogr. , vol.46 , pp. 1734-1746
    • Hewson, I.1    O'Neil, J.M.2    Fuhrman, J.A.3    Dennison, W.C.4
  • 23
    • 0035949626 scopus 로고    scopus 로고
    • A conserved genetic module that encodes the major virion components in both the coliphage T4 and the marine cyanophage S-PM2
    • Hambly E., Tetart F., Desplats C., Wilson W.H., Krisch H.M., Mann N.H. A conserved genetic module that encodes the major virion components in both the coliphage T4 and the marine cyanophage S-PM2. Proc. Natl. Acad. Sci. USA. 98:2001;11411-11416
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 11411-11416
    • Hambly, E.1    Tetart, F.2    Desplats, C.3    Wilson, W.H.4    Krisch, H.M.5    Mann, N.H.6
  • 24
    • 0029762609 scopus 로고    scopus 로고
    • Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes
    • Chen F., Suttle C.A., Short S.M. Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes. Appl. Environ. Microbiol. 62:1996;2869-2874
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2869-2874
    • Chen, F.1    Suttle, C.A.2    Short, S.M.3
  • 25
    • 0030014666 scopus 로고    scopus 로고
    • Evolutionary relationships among large double-stranded DNA viruses that infect microalgae and other organisms as inferred from DNA polymerase genes
    • Chen F., Suttle C.A. Evolutionary relationships among large double-stranded DNA viruses that infect microalgae and other organisms as inferred from DNA polymerase genes. Virology. 219:1996;170-178
    • (1996) Virology , vol.219 , pp. 170-178
    • Chen, F.1    Suttle, C.A.2
  • 26
    • 0036324056 scopus 로고    scopus 로고
    • High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates
    • Connon S., Giovannoni S. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68:2002;3878-3885
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3878-3885
    • Connon, S.1    Giovannoni, S.2
  • 27
    • 0037043731 scopus 로고    scopus 로고
    • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
    • Rappe M., Connon S., Vergin K., Giovannoni S. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature. 418:2002;630-633
    • (2002) Nature , vol.418 , pp. 630-633
    • Rappe, M.1    Connon, S.2    Vergin, K.3    Giovannoni, S.4
  • 28
    • 0036197501 scopus 로고    scopus 로고
    • Sequence analysis of marine virus communities reveals that groups of related algal viruses are widely distributed in nature
    • Short S.M., Suttle C.A. Sequence analysis of marine virus communities reveals that groups of related algal viruses are widely distributed in nature. Appl. Environ. Microbiol. 68:2002;1290-1296
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1290-1296
    • Short, S.M.1    Suttle, C.A.2
  • 29
    • 0033514996 scopus 로고    scopus 로고
    • Evolutionary relationships among diverse bacteriophages and prophages: All the world's a phage
    • Hendrix R., Smith M., Burns R., Ford M., Hatfull G. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc. Natl. Acad. Sci. USA. 96:1999;2192-2197
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 2192-2197
    • Hendrix, R.1    Smith, M.2    Burns, R.3    Ford, M.4    Hatfull, G.5
  • 30
    • 0028029992 scopus 로고
    • Gene transfer among bacteria under conditions of nutrient depletion in simulated and natural aquatic environments
    • Goodman A.E., Marshall K.C., Hermansson M. Gene transfer among bacteria under conditions of nutrient depletion in simulated and natural aquatic environments. FEMS Microbiol. Ecol. 15:1994;55-60
    • (1994) FEMS Microbiol. Ecol. , vol.15 , pp. 55-60
    • Goodman, A.E.1    Marshall, K.C.2    Hermansson, M.3
  • 31
    • 0031902076 scopus 로고    scopus 로고
    • Gene transfer by transduction in the marine environment
    • Jiang S., Paul J.H. Gene transfer by transduction in the marine environment. Appl. Environ. Microbiol. 64:1998;2780
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2780
    • Jiang, S.1    Paul, J.H.2
  • 33
    • 0033170542 scopus 로고    scopus 로고
    • Microbial gene transfer: An ecological perspective
    • Paul J.H. Microbial gene transfer: an ecological perspective. J. Mol. Microbiol. Biotechnol. 1:1999;45-50
    • (1999) J. Mol. Microbiol. Biotechnol. , vol.1 , pp. 45-50
    • Paul, J.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.