A composite bacteriophage alters colonization by an intestinal commensal bacterium

Proceedings of the National Academy of Sciences of the United States of America

Volumn 109, Issue 43, 2012, Pages 17621-17626

  Duerkop, Breck A ^a   Clements, Charmaine V ^a   Rollins, Darcy ^a   Rodrigues, Jorge L M ^b   Hooper, Lora V ^a  

^a UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^b UNIVERSITY OF TEXAS AT ARLINGTON   (United States)

Author keywords

Commensal bacteria; Enterococci; Microbiota; Phage predation

Indexed keywords

AMINO ACID;

ANIMAL EXPERIMENT; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIAL VIRULENCE; BACTERIOPHAGE; BACTERIUM CULTURE; CHROMOSOME; COMMENSAL; ECOLOGICAL NICHE; ENTEROCOCCUS FAECALIS; HOST PATHOGEN INTERACTION; IN VITRO STUDY; IN VIVO STUDY; INTESTINE FLORA; INTRASPECIFIC COMPETITION; MOUSE; NONHUMAN; NUTRIENT AVAILABILITY; PRIORITY JOURNAL; PROPHAGE; STRUCTURAL GENE;

AMINO ACIDS; ANIMALS; BACTERIOPHAGES; GERM-FREE LIFE; HUMANS; INTESTINES; MICE; MICE, INBRED C57BL; POLYMERASE CHAIN REACTION;

EID: 84867903844     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1206136109     Document Type: Article

References (31)

1. Duerkop BA, Vaishnava S, Hooper LV (2009) Immune responses to the microbiota at the intestinal mucosal surface. Immunity 31:368-376.
2. Reyes A, et al. (2010) Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature 466:334-338.
3. Fischetti VA (2007) In vivo acquisition of prophage in Streptococcus pyogenes. Trends Microbiol 15:297-300.
4. Hambly E, Suttle CA (2005) The viriosphere, diversity, and genetic exchange within phage communities. Curr Opin Microbiol 8:444-450. (Pubitemid 41021906)
5. Rodriguez-Valera F, et al. (2009) Explaining microbial population genomics through phage predation. Nat Rev Microbiol 7:828-836.
6. Tannock GW, Cook G (2002) Enterococci as members of the intestinal microflora of humans. Enterococci: Pathogenesis, Molecular Biology, and Antibiotic Resistance, ed Gilmore MS (ASM Press, Washington, DC), pp 101-132.
7. Klare I, Werner G, Witte W (2001) Enterococci. Habitats, infections, virulence factors, resistances to antibiotics, transfer of resistance determinants. Contrib Microbiol 8:108-122.
8. Palmer KL, et al. (2012) Comparative genomics of enterococci: Variation in Enterococcus faecalis, clade structure in E. faecium, and defining characteristics of E. gallinarum and E. casseliflavus. MBio 3:e00318-11.
9. Paulsen IT, et al. (2003) Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. Science 299:2071-2074. (Pubitemid 36383734)
10. Casjens S (2003) Prophages and bacterial genomics: What have we learned so far? Mol Microbiol 49:277-300.
11. Yasmin A, et al. (2010) Comparative genomics and transduction potential of Enterococcus faecalis temperate bacteriophages. J Bacteriol 192:1122-1130.
12. Ackermann HW (2007) 5500 Phages examined in the electron microscope. Arch Virol 152:227-243.
13. Hamdan SM, van Oijen AM (2010) Timing, coordination, and rhythm: Acrobatics at the DNA replication fork. J Biol Chem 285:18979-18983.
14. Rao VB, FeissM (2008) The bacteriophage DNA packaging motor. Annu Rev Genet 42:647-681.
15. Allen HK, et al. (2011) Antibiotics in feed induce prophages in swine fecal microbiomes. MBio 2:e00260-11.
16. McDaniel L, Paul JH (2005) Effect of nutrient addition and environmental factors on prophage induction in natural populations of marine synechococcus species. Appl Environ Microbiol 71:842-850. (Pubitemid 40223571)
17. DeMarini DM, Lawrence BK (1992) Prophage induction by DNA topoisomerase II poisons and reactive-oxygen species: Role of DNA breaks. Mutat Res 267:1-17.
18. Barthel M, et al. (2003) Pretreatment of mice with streptomycin provides a Salmonella enterica serovar Typhimurium colitis model that allows analysis of both pathogen and host. Infect Immun 71:2839-2858. (Pubitemid 36519898)
19. Mazaheri Nezhad Fard R, Barton MD, Heuzenroeder MW (2010) Novel Bacteriophages in Enterococcus spp. Curr Microbiol 60:400-406.
20. Novick RP, Christie GE, Penadés JR (2010) The phage-related chromosomal islands of Gram-positive bacteria. Nat Rev Microbiol 8:541-551.
21. Faruque SM, et al. (2002) RS1 element of Vibrio cholerae can propagate horizontally as a filamentous phage exploiting the morphogenesis genes of CTXphi. Infect Immun 70:163-170. (Pubitemid 34028613)
22. Hassan F, Kamruzzaman M, Mekalanos JJ, Faruque SM (2010) Satellite phage TLCφ enables toxigenic conversion by CTX phage through dif site alteration. Nature 467:982-985.
23. Cohen LW (1969) Delayed lysis with salmonella bacteriophage p22: Induction of lysis by addition of cysteine or histidine to the growth medium. J Virol 4:214-218.
24. LundeM, Aastveit AH, Blatny JM, Nes IF (2005) Effects of diverse environmental conditions on φLC3 prophage stability in Lactococcus lactis. Appl Environ Microbiol 71:721-727. (Pubitemid 40223554)
25. Smit E, Wolters AC, Lee H, Trevors JT, vanElsas JD (1996) Interactions between a genetically marked Pseudomonas fluorescens strain and bacteriophage φR2f in soil: Effects of nutrients, alginate encapsulation, and the wheat rhizosphere. Microb Ecol 31:125 - 140.
26. Schott K, Huether G, Neuhoff V (1983) Free amino acid concentrations in the gut lumen of developing rats. Biochem Med 29:285-292. (Pubitemid 13063720)
27. Gill SR, et al. (2006) Metagenomic analysis of the human distal gut microbiome. Science 312:1355-1359. (Pubitemid 43839542)
28. Turnbaugh PJ, et al. (2009) A core gut microbiome in obese and lean twins. Nature 457:480-484.
29. Chang JC, LaSarre B, Jimenez JC, Aggarwal C, Federle MJ (2011) Two group A streptococcal peptide pheromones act through opposing Rgg regulators to control biofilm development. PLoS Pathog 7:e1002190.
30. Cash HL, Whitham CV, Behrendt CL, Hooper LV (2006) Symbiotic bacteria direct expression of an intestinal bactericidal lectin. Science 313:1126-1130. (Pubitemid 44300239)
31. Sambrook J, Fritsch EF, Maniatis T, eds (1989) Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Lab Press, Plainview, NY), 2nd Ed.