-
1
-
-
4744368323
-
Carbohydrate-binding modules: fine-tuning polysaccharide recognition
-
1133952 1:CAS:528:DC%2BD2cXntlOrsL8%3D 15214846
-
Boraston AB, Bolam DN, Gilbert HJ, Davies GJ. Carbohydrate-binding modules: fine-tuning polysaccharide recognition. Biochem J. 2004;382(Pt 3):769-81.
-
(2004)
Biochem J
, vol.382
, pp. 769-781
-
-
Boraston, A.B.1
Bolam, D.N.2
Gilbert, H.J.3
Davies, G.J.4
-
2
-
-
76649087970
-
Carbohydrate-binding domains: multiplicity of biological roles
-
19908036
-
Guillén D, Sánchez S, Rodríguez-Sanoja R. Carbohydrate-binding domains: multiplicity of biological roles. Appl Microbiol Biotechnol. 2010;85(5):1241-9.
-
(2010)
Appl Microbiol Biotechnol
, vol.85
, Issue.5
, pp. 1241-1249
-
-
Guillén, D.1
Sánchez, S.2
Rodríguez-Sanoja, R.3
-
3
-
-
33745161547
-
Carbohydrate binding modules: biochemical properties and novel applications
-
1489539 1:CAS:528:DC%2BD28XmvFGrtLk%3D 16760304
-
Shoseyov O, Shani Z, Levy I. Carbohydrate binding modules: biochemical properties and novel applications. Microbiol Mol Biol Rev. 2006;70(2):283-95.
-
(2006)
Microbiol Mol Biol Rev
, vol.70
, Issue.2
, pp. 283-295
-
-
Shoseyov, O.1
Shani, Z.2
Levy, I.3
-
4
-
-
12644258001
-
The raw starch binding domain of cyclodextrin glycosyltransferase from Bacillus circulans strain 251
-
1:CAS:528:DyaK2sXntVWj 8955113
-
Penninga D, van der Veen BA, Knegtel RM, van Hijum SA, Rozeboom HJ, Kalk KH, Dijkstra BW, Dijkhuizen L. The raw starch binding domain of cyclodextrin glycosyltransferase from Bacillus circulans strain 251. J Biol Chem. 1996;271(51):32777-84.
-
(1996)
J Biol Chem
, vol.271
, Issue.51
, pp. 32777-32784
-
-
Penninga, D.1
Van Der Veen, B.A.2
Knegtel, R.M.3
Van Hijum, S.A.4
Rozeboom, H.J.5
Kalk, K.H.6
Dijkstra, B.W.7
Dijkhuizen, L.8
-
5
-
-
0030909794
-
Function of conserved tryptophans in the Aspergillus niger glucoamylase 1 starch binding domain
-
1:CAS:528:DyaK2sXjsVansL4%3D 9200704
-
Williamson MP, Le Gal-Coeffet MF, Sorimachi K, Furniss CS, Archer DB, Williamson G. Function of conserved tryptophans in the Aspergillus niger glucoamylase 1 starch binding domain. Biochemistry. 1997;36(24):7535-9.
-
(1997)
Biochemistry
, vol.36
, Issue.24
, pp. 7535-7539
-
-
Williamson, M.P.1
Le Gal-Coeffet, M.F.2
Sorimachi, K.3
Furniss, C.S.4
Archer, D.B.5
Williamson, G.6
-
6
-
-
0035834494
-
Both binding sites of the starch-binding domain of Aspergillus niger glucoamylase are essential for inducing a conformational change in amylose
-
1:CAS:528:DC%2BD3MXotFWgtbw%3D 11700070
-
Giardina T, Gunning AP, Juge N, Faulds CB, Furniss CS, Svensson B, Morris VJ, Williamson G. Both binding sites of the starch-binding domain of Aspergillus niger glucoamylase are essential for inducing a conformational change in amylose. J Mol Biol. 2001;313(5):1149-59.
-
(2001)
J Mol Biol
, vol.313
, Issue.5
, pp. 1149-1159
-
-
Giardina, T.1
Gunning, A.P.2
Juge, N.3
Faulds, C.B.4
Furniss, C.S.5
Svensson, B.6
Morris, V.J.7
Williamson, G.8
-
7
-
-
69449083006
-
The carbohydrate-binding module family 20-diversity, structure, and function
-
1:CAS:528:DC%2BD1MXhtFChtrjN 19682075
-
Christiansen C, Abou Hachem M, Janecek S, Vikso-Nielsen A, Blennow A, Svensson B. The carbohydrate-binding module family 20-diversity, structure, and function. FEBS J. 2009;276(18):5006-29.
-
(2009)
FEBS J
, vol.276
, Issue.18
, pp. 5006-5029
-
-
Christiansen, C.1
Abou Hachem, M.2
Janecek, S.3
Vikso-Nielsen, A.4
Blennow, A.5
Svensson, B.6
-
8
-
-
84908409041
-
Multifunctional nutrient-binding proteins adapt human symbiotic bacteria for glycan competition in the gut by separately promoting enhanced sensing and catalysis
-
Cameron EA, Kwiatkowski KJ, Lee BH, Hamaker BR, Koropatkin NM, Martens EC. Multifunctional nutrient-binding proteins adapt human symbiotic bacteria for glycan competition in the gut by separately promoting enhanced sensing and catalysis. mBio. 2014;5(5):e01414-41.
-
(2014)
mBio
, vol.5
, Issue.5
, pp. e01414-e01441
-
-
Cameron, E.A.1
Kwiatkowski, K.J.2
Lee, B.H.3
Hamaker, B.R.4
Koropatkin, N.M.5
Martens, E.C.6
-
9
-
-
84907562690
-
Two structurally related starch-binding domain families CBM25 and CBM26
-
1:CAS:528:DC%2BC2cXhs1ChsLnL
-
Majzlova K, Janecek S. Two structurally related starch-binding domain families CBM25 and CBM26. Biologia. 2014;69(9):1087-96.
-
(2014)
Biologia
, vol.69
, Issue.9
, pp. 1087-1096
-
-
Majzlova, K.1
Janecek, S.2
-
10
-
-
84897060453
-
A starch-binding domain identified in alpha-amylase (AmyP) represents a new family of carbohydrate-binding modules that contribute to enzymatic hydrolysis of soluble starch
-
1:CAS:528:DC%2BC2cXktlWjtL0%3D 24613924
-
Peng H, Zheng Y, Chen M, Wang Y, Xiao Y, Gao Y. A starch-binding domain identified in alpha-amylase (AmyP) represents a new family of carbohydrate-binding modules that contribute to enzymatic hydrolysis of soluble starch. FEBS Lett. 2014;588(7):1161-7.
-
(2014)
FEBS Lett
, vol.588
, Issue.7
, pp. 1161-1167
-
-
Peng, H.1
Zheng, Y.2
Chen, M.3
Wang, Y.4
Xiao, Y.5
Gao, Y.6
-
11
-
-
58149200943
-
The carbohydrate-active enzymes database (CAZy): an expert resource for glycogenomics
-
2686590 1:CAS:528:DC%2BD1cXhsFejtL7K 18838391 (Database issue)
-
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B. The carbohydrate-active enzymes database (CAZy): an expert resource for glycogenomics. Nucleic Acids Res. 2009;37(Database issue):D233-8.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D233-D238
-
-
Cantarel, B.L.1
Coutinho, P.M.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
Henrissat, B.6
-
12
-
-
27644529698
-
A new clan of CBM families based on bioinformatics of starch-binding domains from families CBM20 and CBM21
-
1:CAS:528:DC%2BD2MXht1SltLrF 16262690
-
Machovic M, Svensson B, MacGregor EA, Janecek S. A new clan of CBM families based on bioinformatics of starch-binding domains from families CBM20 and CBM21. FEBS J. 2005;272(21):5497-513.
-
(2005)
FEBS J
, vol.272
, Issue.21
, pp. 5497-5513
-
-
Machovic, M.1
Svensson, B.2
MacGregor, E.A.3
Janecek, S.4
-
14
-
-
33750979827
-
The evolution of putative starch-binding domains
-
1:CAS:528:DC%2BD28Xht1els77E 17084392
-
Machovic M, Janecek S. The evolution of putative starch-binding domains. FEBS Lett. 2006;580(27):6349-56.
-
(2006)
FEBS Lett
, vol.580
, Issue.27
, pp. 6349-6356
-
-
Machovic, M.1
Janecek, S.2
-
15
-
-
0028266197
-
Nucleotide sequence and X-ray structure of cyclodextrin glycosyltransferase from Bacillus circulans strain 251 in a maltose-dependent crystal form
-
1:CAS:528:DyaK2cXivFamtLY%3D 8107143
-
Lawson CL, van Montfort R, Strokopytov B, Rozeboom HJ, Kalk KH, de Vries GE, Penninga D, Dijkhuizen L, Dijkstra BW. Nucleotide sequence and X-ray structure of cyclodextrin glycosyltransferase from Bacillus circulans strain 251 in a maltose-dependent crystal form. J Mol Biol. 1994;236(2):590-600.
-
(1994)
J Mol Biol
, vol.236
, Issue.2
, pp. 590-600
-
-
Lawson, C.L.1
Van Montfort, R.2
Strokopytov, B.3
Rozeboom, H.J.4
Kalk, K.H.5
De Vries, G.E.6
Penninga, D.7
Dijkhuizen, L.8
Dijkstra, B.W.9
-
16
-
-
0031570348
-
Solution structure of the granular starch binding domain of Aspergillus niger glucoamylase bound to beta-cyclodextrin
-
1:CAS:528:DyaK2sXjvFamt7Y%3D 9195884
-
Sorimachi K, Le Gal-Coeffet MF, Williamson G, Archer DB, Williamson MP. Solution structure of the granular starch binding domain of Aspergillus niger glucoamylase bound to beta-cyclodextrin. Structure. 1997;5(5):647-61.
-
(1997)
Structure
, vol.5
, Issue.5
, pp. 647-661
-
-
Sorimachi, K.1
Le Gal-Coeffet, M.F.2
Williamson, G.3
Archer, D.B.4
Williamson, M.P.5
-
17
-
-
33748273525
-
Starch-synthase III family encodes a tandem of three starch-binding domains
-
1:CAS:528:DC%2BD28Xpt1Cmurs%3D 16862594
-
Palopoli N, Busi MV, Fornasari MS, Gomez-Casati D, Ugalde R, Parisi G. Starch-synthase III family encodes a tandem of three starch-binding domains. Proteins. 2006;65(1):27-31.
-
(2006)
Proteins
, vol.65
, Issue.1
, pp. 27-31
-
-
Palopoli, N.1
Busi, M.V.2
Fornasari, M.S.3
Gomez-Casati, D.4
Ugalde, R.5
Parisi, G.6
-
18
-
-
40149108056
-
Role of the N-terminal starch-binding domains in the kinetic properties of starch synthase III from Arabidopsis thaliana
-
1:CAS:528:DC%2BD1cXhslChtb4%3D 18260645
-
Valdez HA, Busi MV, Wayllace NZ, Parisi G, Ugalde RA, Gomez-Casati DF. Role of the N-terminal starch-binding domains in the kinetic properties of starch synthase III from Arabidopsis thaliana. Biochemistry. 2008;47(9):3026-32.
-
(2008)
Biochemistry
, vol.47
, Issue.9
, pp. 3026-3032
-
-
Valdez, H.A.1
Busi, M.V.2
Wayllace, N.Z.3
Parisi, G.4
Ugalde, R.A.5
Gomez-Casati, D.F.6
-
19
-
-
74549189480
-
The starch-binding capacity of the noncatalytic SBD2 region and the interaction between the N- and C-terminal domains are involved in the modulation of the activity of starch synthase III from Arabidopsis thaliana
-
1:CAS:528:DC%2BC3cXptVWhsw%3D%3D 19968859
-
Wayllace NZ, Valdez HA, Ugalde RA, Busi MV, Gomez-Casati DF. The starch-binding capacity of the noncatalytic SBD2 region and the interaction between the N- and C-terminal domains are involved in the modulation of the activity of starch synthase III from Arabidopsis thaliana. FEBS J. 2010;277(2):428-40.
-
(2010)
FEBS J
, vol.277
, Issue.2
, pp. 428-440
-
-
Wayllace, N.Z.1
Valdez, H.A.2
Ugalde, R.A.3
Busi, M.V.4
Gomez-Casati, D.F.5
-
20
-
-
80051514068
-
Preferential binding of SBD from Arabidopsis thaliana SSIII to polysaccharides: study of amino acid residues involved
-
1:CAS:528:DC%2BC3MXpvVWls7s%3D
-
Valdez HA, Peralta DA, Wayllace NZ, Grisolía MJ, Gomez-Casati DF, Busi MV. Preferential binding of SBD from Arabidopsis thaliana SSIII to polysaccharides: study of amino acid residues involved. Starch Stärke. 2011;63(8):451-60.
-
(2011)
Starch Stärke
, vol.63
, Issue.8
, pp. 451-460
-
-
Valdez, H.A.1
Peralta, D.A.2
Wayllace, N.Z.3
Grisolía, M.J.4
Gomez-Casati, D.F.5
Busi, M.V.6
-
21
-
-
33746830079
-
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features
-
1544224 1:CAS:528:DC%2BD28XotFegu7s%3D 16868079
-
Derelle E, Ferraz C, Rombauts S, Rouze P, Worden AZ, Robbens S, Partensky F, Degroeve S, Echeynie S, Cooke R, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc Natl Acad Sci USA. 2006;103(31):11647-52.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.31
, pp. 11647-11652
-
-
Derelle, E.1
Ferraz, C.2
Rombauts, S.3
Rouze, P.4
Worden, A.Z.5
Robbens, S.6
Partensky, F.7
Degroeve, S.8
Echeynie, S.9
Cooke, R.10
-
22
-
-
84925823425
-
An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
-
Blanc-Mathieu R, Verhelst B, Derelle E, Rombauts S, Bouget FY, Carre I, Chateau A, Eyre-Walker A, Grimsley N, Moreau H, et al. An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. BMC Genom. 2014;15:1103.
-
(2014)
BMC Genom
, vol.15
, pp. 1103
-
-
Blanc-Mathieu, R.1
Verhelst, B.2
Derelle, E.3
Rombauts, S.4
Bouget, F.Y.5
Carre, I.6
Chateau, A.7
Eyre-Walker, A.8
Grimsley, N.9
Moreau, H.10
-
23
-
-
34250689932
-
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
-
1863510 1:CAS:528:DC%2BD2sXlslahtr8%3D 17460045
-
Palenik B, Grimwood J, Aerts A, Rouze P, Salamov A, Putnam N, Dupont C, Jorgensen R, Derelle E, Rombauts S, et al. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci USA. 2007;104(18):7705-10.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.18
, pp. 7705-7710
-
-
Palenik, B.1
Grimwood, J.2
Aerts, A.3
Rouze, P.4
Salamov, A.5
Putnam, N.6
Dupont, C.7
Jorgensen, R.8
Derelle, E.9
Rombauts, S.10
-
24
-
-
35348896591
-
The Chlamydomonas genome reveals the evolution of key animal and plant functions
-
2875087 1:CAS:528:DC%2BD2sXhtFCjt7vJ 17932292
-
Merchant SS, Prochnik SE, Vallon O, Harris EH, Karpowicz SJ, Witman GB, Terry A, Salamov A, Fritz-Laylin LK, Marechal-Drouard L, et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science. 2007;318(5848):245-50.
-
(2007)
Science
, vol.318
, Issue.5848
, pp. 245-250
-
-
Merchant, S.S.1
Prochnik, S.E.2
Vallon, O.3
Harris, E.H.4
Karpowicz, S.J.5
Witman, G.B.6
Terry, A.7
Salamov, A.8
Fritz-Laylin, L.K.9
Marechal-Drouard, L.10
-
25
-
-
64849088316
-
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
-
1:CAS:528:DC%2BD1MXktFals7Y%3D 19359590
-
Worden AZ, Lee JH, Mock T, Rouze P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E, Everett MV, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science. 2009;324(5924):268-72.
-
(2009)
Science
, vol.324
, Issue.5924
, pp. 268-272
-
-
Worden, A.Z.1
Lee, J.H.2
Mock, T.3
Rouze, P.4
Simmons, M.P.5
Aerts, A.L.6
Allen, A.E.7
Cuvelier, M.L.8
Derelle, E.9
Everett, M.V.10
-
26
-
-
78049477633
-
The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex
-
2965543 1:CAS:528:DC%2BC3cXhsVKjs7rI 20852019
-
Blanc G, Duncan G, Agarkova I, Borodovsky M, Gurnon J, Kuo A, Lindquist E, Lucas S, Pangilinan J, Polle J, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell. 2010;22(9):2943-55.
-
(2010)
Plant Cell
, vol.22
, Issue.9
, pp. 2943-2955
-
-
Blanc, G.1
Duncan, G.2
Agarkova, I.3
Borodovsky, M.4
Gurnon, J.5
Kuo, A.6
Lindquist, E.7
Lucas, S.8
Pangilinan, J.9
Polle, J.10
-
27
-
-
77954606278
-
Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri
-
2993248 1:CAS:528:DC%2BC3cXosVWgu78%3D 20616280
-
Prochnik SE, Umen J, Nedelcu AM, Hallmann A, Miller SM, Nishii I, Ferris P, Kuo A, Mitros T, Fritz-Laylin LK, et al. Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri. Science. 2010;329(5988):223-6.
-
(2010)
Science
, vol.329
, Issue.5988
, pp. 223-226
-
-
Prochnik, S.E.1
Umen, J.2
Nedelcu, A.M.3
Hallmann, A.4
Miller, S.M.5
Nishii, I.6
Ferris, P.7
Kuo, A.8
Mitros, T.9
Fritz-Laylin, L.K.10
-
28
-
-
0035780978
-
Chlamydomonas as a model organism
-
1:CAS:528:DC%2BD3MXkslWgsb8%3D 11337403
-
Harris EH. Chlamydomonas as a model organism. Annu Rev Plant Physiol Plant Mol Biol. 2001;52:363-406.
-
(2001)
Annu Rev Plant Physiol Plant Mol Biol
, vol.52
, pp. 363-406
-
-
Harris, E.H.1
-
29
-
-
84946066949
-
Smallest eukaryotic organism
-
Courties CVA, Troussellier M, Lautier J, Chretiennot-Dinet MJ, Neveux J, Machado C, Claustre H. Smallest eukaryotic organism. Nature. 1994;370:1.
-
(1994)
Nature
, vol.370
, pp. 1
-
-
Courties, C.V.A.1
Troussellier, M.2
Lautier, J.3
Chretiennot-Dinet, M.J.4
Neveux, J.5
Machado, C.6
Claustre, H.7
-
30
-
-
45849090408
-
Early gene duplication within chloroplastida and its correspondence with relocation of starch metabolism to chloroplasts
-
2323822 1:CAS:528:DC%2BD1cXmt1eksrw%3D 18245855
-
Deschamps P, Moreau H, Worden AZ, Dauvillee D, Ball SG. Early gene duplication within chloroplastida and its correspondence with relocation of starch metabolism to chloroplasts. Genetics. 2008;178(4):2373-87.
-
(2008)
Genetics
, vol.178
, Issue.4
, pp. 2373-2387
-
-
Deschamps, P.1
Moreau, H.2
Worden, A.Z.3
Dauvillee, D.4
Ball, S.G.5
-
31
-
-
14744271604
-
Starch division and partitioning. A mechanism for granule propagation and maintenance in the picophytoplanktonic green alga Ostreococcus tauri
-
523392 1:CAS:528:DC%2BD2cXovVymsLc%3D 15448195
-
Ral JP, Derelle E, Ferraz C, Wattebled F, Farinas B, Corellou F, Buleon A, Slomianny MC, Delvalle D, d'Hulst C, et al. Starch division and partitioning. A mechanism for granule propagation and maintenance in the picophytoplanktonic green alga Ostreococcus tauri. Plant Physiol. 2004;136(2):3333-40.
-
(2004)
Plant Physiol
, vol.136
, Issue.2
, pp. 3333-3340
-
-
Ral, J.P.1
Derelle, E.2
Ferraz, C.3
Wattebled, F.4
Farinas, B.5
Corellou, F.6
Buleon, A.7
Slomianny, M.C.8
Delvalle, D.9
D'Hulst, C.10
-
32
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
146917 1:CAS:528:DyaK2sXlvFyhu7w%3D 9254694
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25(17):3389-402.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
33
-
-
0035147535
-
Desulfosporosinus meridiei sp. nov., a spore-forming sulfate-reducing bacterium isolated from gasolene-contaminated groundwater
-
1:CAS:528:DC%2BD3MXhtlaks74%3D 11211250
-
Robertson WJ, Bowman JP, Franzmann PD, Mee BJ. Desulfosporosinus meridiei sp. nov., a spore-forming sulfate-reducing bacterium isolated from gasolene-contaminated groundwater. Int J Syst Evol Microbiol. 2001;51(Pt 1):133-40.
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, pp. 133-140
-
-
Robertson, W.J.1
Bowman, J.P.2
Franzmann, P.D.3
Mee, B.J.4
-
34
-
-
84858602406
-
InterPro in 2011: new developments in the family and domain prediction database
-
3245097 1:CAS:528:DC%2BC3MXhs12hurfO 22096229 (Database issue)
-
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, et al. InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. 2012;40(Database issue):D306-12.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D306-D312
-
-
Hunter, S.1
Jones, P.2
Mitchell, A.3
Apweiler, R.4
Attwood, T.K.5
Bateman, A.6
Bernard, T.7
Binns, D.8
Bork, P.9
Burge, S.10
-
35
-
-
3242887157
-
CD-Search: protein domain annotations on the fly
-
441592 1:CAS:528:DC%2BD2cXlvFKntb4%3D 15215404 (Web server issue)
-
Marchler-Bauer A, Bryant SH. CD-Search: protein domain annotations on the fly. Nucleic Acids Res. 2004;32(Web server issue):W327-31.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. W327-W331
-
-
Marchler-Bauer, A.1
Bryant, S.H.2
-
36
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
1:CAS:528:DC%2BD2sXhtlaqsL%2FM 17846036
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, et al. Clustal W and Clustal X version 2.0. Bioinformatics. 2007;23(21):2947-8.
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
-
37
-
-
33644855732
-
Lammerts van Bueren A, Law V: a structural and functional analysis of alpha-glucan recognition by family 25 and 26 carbohydrate-binding modules reveals a conserved mode of starch recognition
-
1:CAS:528:DC%2BD28Xht1Chsw%3D%3D 16230347
-
Boraston AB, Healey M, Klassen J, Ficko-Blean E. Lammerts van Bueren A, Law V: a structural and functional analysis of alpha-glucan recognition by family 25 and 26 carbohydrate-binding modules reveals a conserved mode of starch recognition. J Biol Chem. 2006;281(1):587-98.
-
(2006)
J Biol Chem
, vol.281
, Issue.1
, pp. 587-598
-
-
Boraston, A.B.1
Healey, M.2
Klassen, J.3
Ficko-Blean, E.4
-
38
-
-
0023234645
-
Cloning and nucleotide sequence of the gene coding for enzymatically active fragments of the Bacillus polymyxa beta-amylase
-
211983 1:CAS:528:DyaL2sXhvV2qu7g%3D 2435707
-
Kawazu T, Nakanishi Y, Uozumi N, Sasaki T, Yamagata H, Tsukagoshi N, Udaka S. Cloning and nucleotide sequence of the gene coding for enzymatically active fragments of the Bacillus polymyxa beta-amylase. J Bacteriol. 1987;169(4):1564-70.
-
(1987)
J Bacteriol
, vol.169
, Issue.4
, pp. 1564-1570
-
-
Kawazu, T.1
Nakanishi, Y.2
Uozumi, N.3
Sasaki, T.4
Yamagata, H.5
Tsukagoshi, N.6
Udaka, S.7
-
39
-
-
26444602554
-
Crystallization of the glycogen-binding domain of the AMP-activated protein kinase beta subunit and preliminary X-ray analysis
-
1952378 1:CAS:528:DC%2BD2MXhvVGhsQ%3D%3D 16508085
-
Polekhina G, Feil SC, Gupta A, O'Donnell P, Stapleton D, Parker MW. Crystallization of the glycogen-binding domain of the AMP-activated protein kinase beta subunit and preliminary X-ray analysis. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005;61(Pt 1):39-42.
-
(2005)
Acta Crystallogr Sect F Struct Biol Cryst Commun
, vol.61
, pp. 39-42
-
-
Polekhina, G.1
Feil, S.C.2
Gupta, A.3
O'Donnell, P.4
Stapleton, D.5
Parker, M.W.6
-
40
-
-
0033537993
-
GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences
-
1:CAS:528:DyaK1MXitFOmsLY%3D 10191147
-
Jones DT. GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences. J Mol Biol. 1999;287(4):797-815.
-
(1999)
J Mol Biol
, vol.287
, Issue.4
, pp. 797-815
-
-
Jones, D.T.1
-
41
-
-
67649887151
-
pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination
-
1:CAS:528:DC%2BD1MXot1Cjtbc%3D 19429599
-
Lobley A, Sadowski MI, Jones DT. pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination. Bioinformatics. 2009;25(14):1761-7.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1761-1767
-
-
Lobley, A.1
Sadowski, M.I.2
Jones, D.T.3
-
42
-
-
67849103756
-
@TOME-2: a new pipeline for comparative modeling of protein-ligand complexes
-
2703933 1:CAS:528:DC%2BD1MXosFSkur4%3D 19443448 (Web Server issue)
-
Pons JL, Labesse G. @TOME-2: a new pipeline for comparative modeling of protein-ligand complexes. Nucleic Acids Res. 2009;37(Web Server issue):W485-91.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. W485-W491
-
-
Pons, J.L.1
Labesse, G.2
-
43
-
-
57849090443
-
The glycogen-binding domain on the AMPK beta subunit allows the kinase to act as a glycogen sensor
-
2642990 1:CAS:528:DC%2BD1MXptFWqug%3D%3D 19117544
-
McBride A, Ghilagaber S, Nikolaev A, Hardie DG. The glycogen-binding domain on the AMPK beta subunit allows the kinase to act as a glycogen sensor. Cell Metab. 2009;9(1):23-34.
-
(2009)
Cell Metab
, vol.9
, Issue.1
, pp. 23-34
-
-
McBride, A.1
Ghilagaber, S.2
Nikolaev, A.3
Hardie, D.G.4
-
44
-
-
84862907765
-
AMP-activated protein kinase beta-subunit requires internal motion for optimal carbohydrate binding
-
3265976 1:CAS:528:DC%2BC38XhtFajs7Y%3D 22339867
-
Bieri M, Mobbs JI, Koay A, Louey G, Mok YF, Hatters DM, Park JT, Park KH, Neumann D, Stapleton D, et al. AMP-activated protein kinase beta-subunit requires internal motion for optimal carbohydrate binding. Biophys J. 2012;102(2):305-14.
-
(2012)
Biophys J
, vol.102
, Issue.2
, pp. 305-314
-
-
Bieri, M.1
Mobbs, J.I.2
Koay, A.3
Louey, G.4
Mok, Y.F.5
Hatters, D.M.6
Park, J.T.7
Park, K.H.8
Neumann, D.9
Stapleton, D.10
-
45
-
-
57349180133
-
Domain evolution in the GH13 pullulanase subfamily with focus on the carbohydrate-binding module family 48
-
Machovič M, Janeček Š. Domain evolution in the GH13 pullulanase subfamily with focus on the carbohydrate-binding module family 48. Biologia. 2008;63(6):1057-68.
-
(2008)
Biologia
, vol.63
, Issue.6
, pp. 1057-1068
-
-
Machovič, M.1
Janeček, Š.2
-
46
-
-
84891763855
-
The carbohydrate-active enzymes database (CAZy) in 2013
-
3965031 1:CAS:528:DC%2BC2cXoslWn 24270786 (Database issue)
-
Lombard V, Golaconda Ramulu H, Drula E, Coutinho PM, Henrissat B. The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res. 2014;42(Database issue):D490-5.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D490-D495
-
-
Lombard, V.1
Golaconda Ramulu, H.2
Drula, E.3
Coutinho, P.M.4
Henrissat, B.5
-
47
-
-
0037799908
-
AMPK beta subunit targets metabolic stress sensing to glycogen
-
1:CAS:528:DC%2BD3sXjvFamtro%3D 12747837
-
Polekhina G, Gupta A, Michell BJ, van Denderen B, Murthy S, Feil SC, Jennings IG, Campbell DJ, Witters LA, Parker MW, et al. AMPK beta subunit targets metabolic stress sensing to glycogen. Curr Biol. 2003;13(10):867-71.
-
(2003)
Curr Biol
, vol.13
, Issue.10
, pp. 867-871
-
-
Polekhina, G.1
Gupta, A.2
Michell, B.J.3
Van Denderen, B.4
Murthy, S.5
Feil, S.C.6
Jennings, I.G.7
Campbell, D.J.8
Witters, L.A.9
Parker, M.W.10
-
48
-
-
0030513264
-
X-ray structure of cyclodextrin glucanotransferase from alkalophilic Bacillus sp. 1011. Comparison of two independent molecules at 1.8 A resolution
-
1:STN:280:DC%2BD2czpsFaksQ%3D%3D
-
Harata K, Haga K, Nakamura A, Aoyagi M, Yamane K. X-ray structure of cyclodextrin glucanotransferase from alkalophilic Bacillus sp. 1011. Comparison of two independent molecules at 1.8 A resolution. Acta Crystallogr Sect D Biol Crystallogr. 1996;52(Pt 6):1136-45.
-
(1996)
Acta Crystallogr Sect D Biol Crystallogr
, vol.52
, pp. 1136-1145
-
-
Harata, K.1
Haga, K.2
Nakamura, A.3
Aoyagi, M.4
Yamane, K.5
-
49
-
-
0033614827
-
X-ray structure of Novamyl, the five-domain "maltogenic" alpha-amylase from Bacillus stearothermophilus: maltose and acarbose complexes at 1.7A resolution
-
1:CAS:528:DyaK1MXjsVKnu7g%3D 10387084
-
Dauter Z, Dauter M, Brzozowski AM, Christensen S, Borchert TV, Beier L, Wilson KS, Davies GJ. X-ray structure of Novamyl, the five-domain "maltogenic" alpha-amylase from Bacillus stearothermophilus: maltose and acarbose complexes at 1.7A resolution. Biochemistry. 1999;38(26):8385-92.
-
(1999)
Biochemistry
, vol.38
, Issue.26
, pp. 8385-8392
-
-
Dauter, Z.1
Dauter, M.2
Brzozowski, A.M.3
Christensen, S.4
Borchert, T.V.5
Beier, L.6
Wilson, K.S.7
Davies, G.J.8
-
50
-
-
84923013262
-
Surface binding sites in amylase have distinct roles in recognition of starch structure motifs and degradation
-
1:CAS:528:DC%2BC2MXisVShtr4%3D 25661878
-
Cockburn D, Nielsen MM, Christiansen C, Andersen JM, Rannes JB, Blennow A, Svensson B. Surface binding sites in amylase have distinct roles in recognition of starch structure motifs and degradation. Int J Biol Macromol. 2015;75:338-45.
-
(2015)
Int J Biol Macromol
, vol.75
, pp. 338-345
-
-
Cockburn, D.1
Nielsen, M.M.2
Christiansen, C.3
Andersen, J.M.4
Rannes, J.B.5
Blennow, A.6
Svensson, B.7
-
51
-
-
37449001474
-
Functional and structural characterization of the catalytic domain of the starch synthase III from Arabidopsis thaliana
-
1:CAS:528:DC%2BD1cXisVamsQ%3D%3D 17623838
-
Busi MV, Palopoli N, Valdez HA, Fornasari MS, Wayllace NZ, Gomez-Casati DF, Parisi G, Ugalde RA. Functional and structural characterization of the catalytic domain of the starch synthase III from Arabidopsis thaliana. Proteins. 2008;70(1):31-40.
-
(2008)
Proteins
, vol.70
, Issue.1
, pp. 31-40
-
-
Busi, M.V.1
Palopoli, N.2
Valdez, H.A.3
Fornasari, M.S.4
Wayllace, N.Z.5
Gomez-Casati, D.F.6
Parisi, G.7
Ugalde, R.A.8
-
52
-
-
84883222952
-
Improving the glycosyltransferase activity of Agrobacterium tumefaciens glycogen synthase by fusion of N-terminal starch binding domains (SBDs)
-
1:CAS:528:DC%2BC3sXhtVKmsbvF 23796574
-
Martin M, Wayllace NZ, Valdez HA, Gomez-Casati DF, Busi MV. Improving the glycosyltransferase activity of Agrobacterium tumefaciens glycogen synthase by fusion of N-terminal starch binding domains (SBDs). Biochimie. 2013;95(10):1865-70.
-
(2013)
Biochimie
, vol.95
, Issue.10
, pp. 1865-1870
-
-
Martin, M.1
Wayllace, N.Z.2
Valdez, H.A.3
Gomez-Casati, D.F.4
Busi, M.V.5
-
53
-
-
0346500587
-
Engineering a bifunctional starch-cellulose cross-bridge protein
-
1:CAS:528:DC%2BD2cXktlWmtg%3D%3D 14738848
-
Levy I, Paldi T, Shoseyov O. Engineering a bifunctional starch-cellulose cross-bridge protein. Biomaterials. 2004;25(10):1841-9.
-
(2004)
Biomaterials
, vol.25
, Issue.10
, pp. 1841-1849
-
-
Levy, I.1
Paldi, T.2
Shoseyov, O.3
-
54
-
-
33845498615
-
Starch-binding domains in the post-genome era
-
1:CAS:528:DC%2BD2sXhtFSrt78%3D 17013558
-
Machovic M, Janecek S. Starch-binding domains in the post-genome era. Cell Mol Life Sci. 2006;63(23):2710-24.
-
(2006)
Cell Mol Life Sci
, vol.63
, Issue.23
, pp. 2710-2724
-
-
Machovic, M.1
Janecek, S.2
-
55
-
-
84863119289
-
Circular permutation of the starch-binding domain: inversion of ligand selectivity with increased affinity
-
1:CAS:528:DC%2BC38XitVGgtbs%3D
-
Stephen P, Tseng KL, Liu YN, Lyu PC. Circular permutation of the starch-binding domain: inversion of ligand selectivity with increased affinity. Chem Commun (Camb). 2012;48(20):2612-4.
-
(2012)
Chem Commun (Camb)
, vol.48
, Issue.20
, pp. 2612-2614
-
-
Stephen, P.1
Tseng, K.L.2
Liu, Y.N.3
Lyu, P.C.4
-
56
-
-
84859742466
-
Unipro UGENE: a unified bioinformatics toolkit
-
1:CAS:528:DC%2BC38Xlt1Gnu7g%3D 22368248
-
Okonechnikov K, Golosova O, Fursov M. Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics. 2012;28(8):1166-7.
-
(2012)
Bioinformatics
, vol.28
, Issue.8
, pp. 1166-1167
-
-
Okonechnikov, K.1
Golosova, O.2
Fursov, M.3
-
57
-
-
84890330527
-
MEGA6: molecular evolutionary genetics analysis version 6.0
-
3840312 1:CAS:528:DC%2BC3sXhvVKhurzP 24132122
-
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 2013;30(12):2725-9.
-
(2013)
Mol Biol Evol
, vol.30
, Issue.12
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
58
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
1:CAS:528:DC%2BD3cXhtVyjs7Y%3D
-
Hall TA. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 1999;41:95-8.
-
(1999)
Nucleic Acids Symp Ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
59
-
-
0029361476
-
Comparative protein modeling by satisfaction of spatial restraints
-
1:CAS:528:DyaK2MXptV2rtL8%3D
-
Sali A. Comparative protein modeling by satisfaction of spatial restraints. Mole Med Today. 1995;1(6):270-7.
-
(1995)
Mole Med Today
, vol.1
, Issue.6
, pp. 270-277
-
-
Sali, A.1
-
60
-
-
0037441653
-
Structure validation by Calpha geometry: phi, psi and Cbeta deviation
-
1:CAS:528:DC%2BD3sXpvVKlsA%3D%3D 12557186
-
Lovell SC, Davis IW, Arendall WB 3rd, de Bakker PI, Word JM, Prisant MG, Richardson JS, Richardson DC. Structure validation by Calpha geometry: phi, psi and Cbeta deviation. Proteins. 2003;50(3):437-50.
-
(2003)
Proteins
, vol.50
, Issue.3
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall, W.B.3
De Bakker, P.I.4
Word, J.M.5
Prisant, M.G.6
Richardson, J.S.7
Richardson, D.C.8
-
61
-
-
0026610767
-
Assessment of protein models with three-dimensional profiles
-
1:STN:280:DyaK387mvVWluw%3D%3D 1538787
-
Luthy R, Bowie JU, Eisenberg D. Assessment of protein models with three-dimensional profiles. Nature. 1992;356(6364):83-5.
-
(1992)
Nature
, vol.356
, Issue.6364
, pp. 83-85
-
-
Luthy, R.1
Bowie, J.U.2
Eisenberg, D.3
-
62
-
-
2442456104
-
A method for simultaneous alignment of multiple protein structures
-
1:CAS:528:DC%2BD2cXkslyltLw%3D 15162494
-
Shatsky M, Nussinov R, Wolfson HJ. A method for simultaneous alignment of multiple protein structures. Proteins. 2004;56(1):143-56.
-
(2004)
Proteins
, vol.56
, Issue.1
, pp. 143-156
-
-
Shatsky, M.1
Nussinov, R.2
Wolfson, H.J.3
-
63
-
-
33645669336
-
A chloroplast-localized dual-specificity protein phosphatase in Arabidopsis contains a phylogenetically dispersed and ancient carbohydrate-binding domain, which binds the polysaccharide starch
-
1:CAS:528:DC%2BD28XltF2gur0%3D 16623901
-
Kerk D, Conley TR, Rodriguez FA, Tran HT, Nimick M, Muench DG, Moorhead GB. A chloroplast-localized dual-specificity protein phosphatase in Arabidopsis contains a phylogenetically dispersed and ancient carbohydrate-binding domain, which binds the polysaccharide starch. Plant J. 2006;46(3):400-13.
-
(2006)
Plant J
, vol.46
, Issue.3
, pp. 400-413
-
-
Kerk, D.1
Conley, T.R.2
Rodriguez, F.A.3
Tran, H.T.4
Nimick, M.5
Muench, D.G.6
Moorhead, G.B.7
-
64
-
-
33751517908
-
Expression and one-step purification of recombinant Arabidopsis thaliana frataxin homolog (AtFH)
-
1:CAS:528:DC%2BD28Xht1Klt7jP 16879981
-
Maliandi MV, Busi MV, Clemente M, Zabaleta EJ, Araya A, Gomez-Casati DF. Expression and one-step purification of recombinant Arabidopsis thaliana frataxin homolog (AtFH). Protein Expr Purif. 2007;51(2):157-61.
-
(2007)
Protein Expr Purif
, vol.51
, Issue.2
, pp. 157-161
-
-
Maliandi, M.V.1
Busi, M.V.2
Clemente, M.3
Zabaleta, E.J.4
Araya, A.5
Gomez-Casati, D.F.6
|