메뉴 건너뛰기




Volumn 588, Issue 7, 2014, Pages 1161-1167

A starch-binding domain identified in α-amylase (AmyP) represents a new family of carbohydrate-binding modules that contribute to enzymatic hydrolysis of soluble starch

Author keywords

Binding preference; Carbohydrate binding module; Soluble starch hydrolysis; Starch binding domain; Amylase

Indexed keywords

AMYLASE; STARCH;

EID: 84897060453     PISSN: 00145793     EISSN: 18733468     Source Type: Journal    
DOI: 10.1016/j.febslet.2014.02.050     Document Type: Article
Times cited : (45)

References (31)
  • 1
    • 0037293103 scopus 로고    scopus 로고
    • Relation between domain evolution, specificity, and taxonomy of the α-amylase family members containing a C-terminal starch-binding domain
    • Š. Janeček, B. Svensson, and E.A. MacGregor Relation between domain evolution, specificity, and taxonomy of the α-amylase family members containing a C-terminal starch-binding domain Eur. J. Biochem. 270 2003 635 645
    • (2003) Eur. J. Biochem. , vol.270 , pp. 635-645
    • Janeček, Š.1    Svensson, B.2    Macgregor, E.A.3
  • 2
    • 80054683038 scopus 로고    scopus 로고
    • Structural and evolutionary aspects of two families of non-catalytic domains present in starch and glycogen binding proteins from microbes, plants and animals
    • Š. Janeček, B. Svensson, and E.A. MacGregor Structural and evolutionary aspects of two families of non-catalytic domains present in starch and glycogen binding proteins from microbes, plants and animals Enzyme Microb. Technol. 49 2011 429 440
    • (2011) Enzyme Microb. Technol. , vol.49 , pp. 429-440
    • Janeček, Š.1    Svensson, B.2    Macgregor, E.A.3
  • 8
    • 84859423171 scopus 로고    scopus 로고
    • Identification and phylogenetic characterization of a new subfamily of α-amylase enzymes from marine microorganisms
    • Y. Liu, Y. Lei, X.C. Zhang, Y. Gao, Y.Z. Xiao, and H. Peng Identification and phylogenetic characterization of a new subfamily of α-amylase enzymes from marine microorganisms Mar. Biotechnol. 14 2012 253 260
    • (2012) Mar. Biotechnol. , vol.14 , pp. 253-260
    • Liu, Y.1    Lei, Y.2    Zhang, X.C.3    Gao, Y.4    Xiao, Y.Z.5    Peng, H.6
  • 9
    • 84867315419 scopus 로고    scopus 로고
    • Preferential and rapid degradation of raw rice starch by an α-amylase of glycoside hydrolase subfamily GH13-37
    • Y. Lei, H. Peng, Y. Wang, Y.T. Liu, F. Han, Y.Z. Xiao, and Y. Gao Preferential and rapid degradation of raw rice starch by an α-amylase of glycoside hydrolase subfamily GH13-37 Appl. Microbiol. Biotechnol. 94 2012 1577 1584
    • (2012) Appl. Microbiol. Biotechnol. , vol.94 , pp. 1577-1584
    • Lei, Y.1    Peng, H.2    Wang, Y.3    Liu, Y.T.4    Han, F.5    Xiao, Y.Z.6    Gao, Y.7
  • 11
    • 57349180133 scopus 로고    scopus 로고
    • Domain evolution in the GH13 pullulanase subfamily with focus on the carbohydrate-binding module family 48
    • M. Machovič, and Š. Janeček Domain evolution in the GH13 pullulanase subfamily with focus on the carbohydrate-binding module family 48 Biologia 63 2008 1053 1064
    • (2008) Biologia , vol.63 , pp. 1053-1064
    • Machovič, M.1    Janeček, Š.2
  • 12
    • 1542495429 scopus 로고    scopus 로고
    • Complex structures of Thermoactinomyces vulgaris R-47 α-amylase 1 with malto-oligosaccharides demonstrate the role of domain N acting as a starch-binding domain
    • A. Abe, T. Tonozuka, Y. Sakano, and S. Kamitori Complex structures of Thermoactinomyces vulgaris R-47 α-amylase 1 with malto-oligosaccharides demonstrate the role of domain N acting as a starch-binding domain J. Mol. Biol. 335 2004 811 822
    • (2004) J. Mol. Biol. , vol.335 , pp. 811-822
    • Abe, A.1    Tonozuka, T.2    Sakano, Y.3    Kamitori, S.4
  • 13
    • 33750979827 scopus 로고    scopus 로고
    • The evolution of putative starch-binding domains
    • M. Machovič, and Š. Janeček The evolution of putative starch-binding domains FEBS Lett. 580 2006 6349 6356
    • (2006) FEBS Lett. , vol.580 , pp. 6349-6356
    • Machovič, M.1    Janeček, Š.2
  • 14
    • 33845498615 scopus 로고    scopus 로고
    • Starch-binding domains in the post-genome era
    • M. Machovič, and Š. Janeček Starch-binding domains in the post-genome era Cell. Mol. Life Sci. 63 2006 2710 2724
    • (2006) Cell. Mol. Life Sci. , vol.63 , pp. 2710-2724
    • Machovič, M.1    Janeček, Š.2
  • 15
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 25 1997 4876 4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 16
    • 27644529698 scopus 로고    scopus 로고
    • A new clan of CBM families based on bioinformatics of starch-binding domains from families CBM20 and CBM21
    • M. Machovič, B. Svensson, E.A. MacGregor, and Š. Janeček A new clan of CBM families based on bioinformatics of starch-binding domains from families CBM20 and CBM21 FEBS J. 272 2005 5497 5513
    • (2005) FEBS J. , vol.272 , pp. 5497-5513
    • Machovič, M.1    Svensson, B.2    Macgregor, E.A.3    Janeček, Š.4
  • 17
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • N. Saitou, and M. Nei The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 18
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • R.D.M. Page TreeView: an application to display phylogenetic trees on personal computers Comput. Appl. Biosci. 12 1996 357 358
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 19
    • 75849119359 scopus 로고    scopus 로고
    • SusG: A unique cell-membrane-associated α-amylase from a prominent human gut symbiont targets complex starch molecules
    • N.M. Koropatkin, and T.J. Smith SusG: a unique cell-membrane-associated α-amylase from a prominent human gut symbiont targets complex starch molecules Structure 18 2010 200 215
    • (2010) Structure , vol.18 , pp. 200-215
    • Koropatkin, N.M.1    Smith, T.J.2
  • 20
    • 33747333106 scopus 로고
    • Use of dinitrosalicylic acid reagent for determination of reducing sugar
    • G.L. Miller Use of dinitrosalicylic acid reagent for determination of reducing sugar Anal. Chem. 32 1959 426 428
    • (1959) Anal. Chem. , vol.32 , pp. 426-428
    • Miller, G.L.1
  • 21
    • 0032424629 scopus 로고    scopus 로고
    • Raw starch degradation by the non-raw starch-adsorbing bacterial alpha amylase of Bacillus sp. IMD 434
    • L.M. Hamilton, C.T. Kelly, and W.M. Fogarty Raw starch degradation by the non-raw starch-adsorbing bacterial alpha amylase of Bacillus sp. IMD 434 Carbohydr. Res. 314 1998 251 257
    • (1998) Carbohydr. Res. , vol.314 , pp. 251-257
    • Hamilton, L.M.1    Kelly, C.T.2    Fogarty, W.M.3
  • 22
    • 22044455419 scopus 로고    scopus 로고
    • Comparative characterization of raw starch hydrolyzing α-amylases from various Bacillus strains
    • S. Mitsuiki, K. Mukae, M. Sakai, M. Goto, S. Hayashida, and K. Furukawa Comparative characterization of raw starch hydrolyzing α-amylases from various Bacillus strains Enzyme Microb. Technol. 37 2005 410 416
    • (2005) Enzyme Microb. Technol. , vol.37 , pp. 410-416
    • Mitsuiki, S.1    Mukae, K.2    Sakai, M.3    Goto, M.4    Hayashida, S.5    Furukawa, K.6
  • 24
    • 0032931848 scopus 로고    scopus 로고
    • Characterization of a facultatively psychrophilic bacterium, Vibrio rumoiensis Sp. Nov., That exhibits high catalase activity
    • I. Yumoto, H. Iwata, T. Sawabe, K. Ueno, N. Ichise, H. Matsuyama, H. Okuyama, and K. Kawasaki Characterization of a facultatively psychrophilic bacterium, Vibrio rumoiensis sp. nov., that exhibits high catalase activity Appl. Environ. Microbiol. 65 1999 67 72
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 67-72
    • Yumoto, I.1    Iwata, H.2    Sawabe, T.3    Ueno, K.4    Ichise, N.5    Matsuyama, H.6    Okuyama, H.7    Kawasaki, K.8
  • 26
    • 0012275278 scopus 로고    scopus 로고
    • The starch binding domain of glucoamylase from Aspergillus niger: Overview of its structure, function, and role in raw-starch hydrolysis
    • N. Juge, M.F.L.E. Gal-Coëffet, C.S.M. Furniss, A.P. Gunning, B. Kramhøft, V.J. Morris, G. Williamson, and B. Svensson The starch binding domain of glucoamylase from Aspergillus niger: overview of its structure, function, and role in raw-starch hydrolysis Biologia 57 Suppl. 11 2002 239 245
    • (2002) Biologia , vol.57 , Issue.SUPPL. 11 , pp. 239-245
    • Juge, N.1    Gal-Coëffet, M.F.L.E.2    Furniss, C.S.M.3    Gunning, A.P.4    Kramhøft, B.5    Morris, V.J.6    Williamson, G.7    Svensson, B.8
  • 27
    • 0034283404 scopus 로고    scopus 로고
    • New type of starch binding domain: The direct repeat motif in the C-terminal region of Bacillus Sp. No. 195 α-amylase contributes to starch binding and raw starch degrading
    • J. Sumitani, T. Tottori, T. Kawaguchi, and M. Arai New type of starch binding domain: the direct repeat motif in the C-terminal region of Bacillus sp. no. 195 α-amylase contributes to starch binding and raw starch degrading Biochem. J. 350 2000 477 484
    • (2000) Biochem. J. , vol.350 , pp. 477-484
    • Sumitani, J.1    Tottori, T.2    Kawaguchi, T.3    Arai, M.4
  • 28
    • 0033856840 scopus 로고    scopus 로고
    • Comparative characterization of complete and truncated forms of Lactobacillus amylovorus α-amylase and role of the C-terminal direct repeats in raw-starch binding
    • R.R. Sanoja, J. Morlon-Guyot, J. Jore, J. Pintado, N. Juge, and J.P. Guyot Comparative characterization of complete and truncated forms of Lactobacillus amylovorus α-amylase and role of the C-terminal direct repeats in raw-starch binding Appl. Environ. Microb. 66 2000 3350 3356
    • (2000) Appl. Environ. Microb. , vol.66 , pp. 3350-3356
    • Sanoja, R.R.1    Morlon-Guyot, J.2    Jore, J.3    Pintado, J.4    Juge, N.5    Guyot, J.P.6
  • 29
    • 33645670615 scopus 로고    scopus 로고
    • A novel type carbohydrate-binding module identified in α-glucan, water dikinases is specific for regulated plastidial starch metabolism
    • R. Mikkelsen, K. Suszkiewicz, and A. Blennow A novel type carbohydrate-binding module identified in α-glucan, water dikinases is specific for regulated plastidial starch metabolism Biochemistry 45 2006 4674 4682
    • (2006) Biochemistry , vol.45 , pp. 4674-4682
    • Mikkelsen, R.1    Suszkiewicz, K.2    Blennow, A.3
  • 30
    • 0036315808 scopus 로고    scopus 로고
    • Deletion analysis of the C-terminal region of the α-amylase of Bacillus Sp. Strain TS-23
    • H.F. Lo, L.L. Lin, W.Y. Chiang, M.C. Chie, W.H. Hsu, and C.T. Chang Deletion analysis of the C-terminal region of the α-amylase of Bacillus sp. strain TS-23 Arch. Microbiol. 178 2002 115 123
    • (2002) Arch. Microbiol. , vol.178 , pp. 115-123
    • Lo, H.F.1    Lin, L.L.2    Chiang, W.Y.3    Chie, M.C.4    Hsu, W.H.5    Chang, C.T.6
  • 31
    • 50649108593 scopus 로고    scopus 로고
    • Biochemical characterization of engineered amylopullulanase from Thermoanaerobacter ethanolicus 39E implicating the non-necessity of its 100 C-terminal amino acid residues
    • H.Y. Lin, H.H. Chuang, and F.P. Lin Biochemical characterization of engineered amylopullulanase from Thermoanaerobacter ethanolicus 39E implicating the non-necessity of its 100 C-terminal amino acid residues Extremophiles 12 2008 641 650
    • (2008) Extremophiles , vol.12 , pp. 641-650
    • Lin, H.Y.1    Chuang, H.H.2    Lin, F.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.