Unipro UGENE: A unified bioinformatics toolkit

Bioinformatics

Volumn 28, Issue 8, 2012, Pages 1166-1167

  Okonechnikov, Konstantin ^a   Golosova, Olga ^a   Fursov, Mikhail ^a   Varlamov, Alexey ^b   Vaskin, Yuri ^b   Efremov, Ivan ^b   German Grehov, O G ^b   Kandrov, Denis ^b   Rasputin, Kirill ^b   Syabro, Maxim ^b   Tleukenov, Timur ^b  

^a Unipro Center for Information Technologies   (Russian Federation)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIOLOGY; COMPUTER ANALYSIS; COMPUTER PROGRAM; HIGH THROUGHPUT SEQUENCING; INSTRUMENTATION; METHODOLOGY; MOLECULAR GENETICS; PHYLOGENY; SEQUENCE ALIGNMENT; WORKFLOW;

ALGORITHMS; COMPUTATIONAL BIOLOGY; COMPUTING METHODOLOGIES; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MOLECULAR SEQUENCE ANNOTATION; PHYLOGENY; SEQUENCE ALIGNMENT; SOFTWARE; WORKFLOW;

EID: 84859742466     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts091     Document Type: Note

References (11)

1. Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
2. Goecks, J. et al. (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible and transparent research in the life sciences. Genome Biol., 11, R86.
3. Hull, D. et al. (2006) Taverna: a tool for building and running workflows of services. Nucleic Acids Res., 34, W729-W732.
4. Langmead, B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
5. Mangalam, H.J. (2002) The Bio* Toolkits-a brief overview. Brief. Bioinform., 3, 296-302.
6. Milne, I. et al. (2010) Tablet-next generation sequence assembly visualization. Bioinformatics, 26, 401-402.
7. Möller, S. et al. (2010) Community-driven computational biology with Debian Linux. BMC Bioinformatics, 11 (Suppl. 12), S5.
8. Robinson, J.T. et al. (2011) Integrative genomics viewer. Nat. Biotechnol., 29, 24-26.
9. Rutherford, K et al. (2000) Artemis: sequence visualization and annotation. Bioinformatics, 16, 944-945.
10. Stockinger, H. et al. (2008) Experience using web services for biological sequence analysis. Brief. Bioinform., 9, 493-505.
11. Waterhouse, A.M. et al. (2009) Jalview Version 2-amultiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 1189-1191.