The Chlamydomonas genome reveals the evolution of key animal and plant functions

Science

Volumn 318, Issue 5848, 2007, Pages 245-251

  Merchant, Sabeeha S ^a   Prochnik, Simon E ^b   Vallon, Olivier ^c   Harris, Elizabeth H ^d   Karpowicz, Steven J ^a   Witman, George B ^e   Terry, Astrid ^b   Salamov, Asaf ^b   Fritz Laylin, Lillian K ^f   Maréchal Drouard, Laurence ^d   Marshall, Wallace F ^h   Qu, Liang Hu ⁱ   Nelson, David R ^j   Sanderfoot, Anton A ^k   Spalding, Martin H ^l   Kapitonov, Vladimir V ^m   Ren, Qinghu ⁿ   Ferris, Patrick ^o   Lindquist, Erika ^b   Shapiro, Harris ^b   Lucas, Susan M ^b   Grimwood, Jane ^p   Schmutz, Jeremy ^p   Grigoriev, Igor V ^b   Rokhsar, Daniel S ^b,f   Grossman, Arthur R ^q   Cardol, Pierre ^c,r   Cerutti, Heriberto ^s   Chanfreau, Guillaume ^a   Chen, Chun Long ⁱ   Cognat, Valérie ^g   Croft, Martin T ^t   Dent, Rachel ^f   Dutcher, Susan ^u   Fernández, Emilio ^v   Fukuzawa, Hideya ^w   González Ballester, David ^q   González Halphen, Diego ^x   Hallmann, Armin ^y   Hanikenne, Marc ^r   Hippler, Michael ^z   Inwood, William ^f   Jabbari, Kamel ^aa   Kalanon, Ming ^ab   Kuras, Richard ^c   Lefebvre, Paul A ^k   Lemaire, Stéphane D ^ac   Lobanov, Alexey V ^ad   Lohr, Martin ^ae   Manuell, Andrea ^af   Meier, Iris ^ag   Mets, Laurens ^ah   Mittag, Maria ^ai   Mittelmeier, Telsa ^aj   Moroney, James V ^ak   Moseley, Jeffrey ^q   Napoli, Carolyn ^al   Nedelcu, Aurora M ^am   Niyogi, Krishna ^f   Novoselov, Sergey V ^ad   Paulsen, Ian T ⁿ   Pazour, Greg ^e   Purton, Saul ^an   Ral, Jean Philippe ^ao   Riaño Pachón, Diego Mauricio ^ap   Riekhof, Wayne ^aq   Rymarquis, Linda ^ar   Schroda, Michael ^as   Stern, David ^at   Umen, James ^o   Willows, Robert ^au   Wilson, Nedra ^av   Zimmer, Sara Lana ^at   Allmer, Jens ^aw   Balk, Janneke ^t   Bisova, Katerina ^ax   Chen, Chong Jian ⁱ   Elias, Marek ^ay   Gendler, Karla ^al   Hauser, Charles ^az   Lamb, Mary Rose ^ba   Ledford, Heidi ^f   Long, Joanne C ^a   Minagawa, Jun ^bb   Page, M Dudley ^a   Pan, Junmin ^bc   Pootakham, Wirulda ^q   Roje, Sanja ^bd   Rose, Annkatrin ^be   Stahlberg, Eric ^ag   Terauchi, Aimee M ^a   Yang, Pinfen ^bf   Ball, Steven ^ao   Bowler, Chris ^aa,bg   Dieckmann, Carol L ^aj   Gladyshev, Vadim N ^ad   Green, Pamela ^ar   Jorgensen, Richard ^al   Mayfield, Stephen ^af   Mueller Roeber, Bernd ^ap   Rajamani, Sathish ^ag   Sayre, Richard T ^ag   Brokstein, Peter ^b   Dubchak, Inna ^b   Goodstein, David ^b   Hornick, Leila ^b   Huang, Y Wayne ^b   Jhaveri, Jinal ^b   Luo, Yigong ^b   Martínez, Diego ^b   Ngau, Wing Chi Abby ^b   Otillar, Bobby ^b   Poliakov, Alexander ^b   Porter, Aaron ^b   Szajkowski, Lukasz ^b   Werner, Gregory ^b   Zhou, Kemin ^b   more..

^a UNIVERSITY OF CALIFORNIA   (United States)

^b U S DEPARTMENT OF ENERGY   (United States)

^c INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

^d DUKE UNIVERSITY   (United States)

^e UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

^f UNIVERSITY OF CALIFORNIA   (United States)

^g CNRS   (France)

^h UNIVERSITY OF CALIFORNIA   (United States)

ⁱ SUN YAT SEN UNIVERSITY   (China)

^j UNIVERSITY OF TENNESSEE HEALTH SCIENCE CENTER   (United States)

^k UNIVERSITY OF MINNESOTA   (United States)

^l IOWA STATE UNIVERSITY   (United States)

^m Genetic Information Research Institute   (United States)

ⁿ J CRAIG VENTER INSTITUTE   (United States)

^o SALK INSTITUTE FOR BIOLOGICAL STUDIES   (United States)

^p STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^q GEOPHYSICAL LABORATORY   (United States)

^r UNIVERSITY OF LIÈGE   (Belgium)

^s UNIVERSITY OF NEBRASKA   (United States)

^t UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^u WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^v UNIVERSITY OF CÓRDOBA   (Spain)

^w KYOTO UNIVERSITY   (Japan)

^x INSTITUTO DE FISIOLOGÍA CELULAR   (Mexico)

^y BIELEFELD UNIVERSITY   (Germany)

^z UNIVERSITY OF MÜNSTER   (Germany)

^aa ECOLE NORMALE SUPÉRIEURE   (France)

^ab UNIVERSITY OF MELBOURNE   (Australia)

^ac INSTITUTE OF PLANT SCIENCES PARIS SACLAY IPS2   (France)

^ad UNIVERSITY OF NEBRASKA LINCOLN   (United States)

^ae JOHANNES GUTENBERG UNIVERSITY   (Germany)

^af SCRIPPS RESEARCH INSTITUTE   (United States)

^ag OHIO STATE UNIVERSITY   (United States)

^ah UNIVERSITY OF CHICAGO   (United States)

^ai FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

^aj University of Arizona   (United States)

^ak LOUISIANA STATE UNIVERSITY   (United States)

^al UNIVERSITY OF ARIZONA   (United States)

^am UNIVERSITY OF NEW BRUNSWICK   (Canada)

^an UNIVERSITY COLLEGE LONDON   (United Kingdom)

^ao UNIVERSITÉ DES SCIENCES ET TECHNOLOGIES DE LILLE   (France)

^ap UNIVERSITY OF POTSDAM   (Germany)

^aq NATIONAL JEWISH MEDICAL AND RESEARCH CENTER   (United States)

^ar UNIVERSITY OF DELAWARE   (United States)

^as UNIVERSITY OF FREIBURG   (Germany)

^at United States Department of Agriculture Agricultural Research Service and Boyce Thompson Institute for Plant Research   (United States)

^au MACQUARIE UNIVERSITY   (Australia)

^av OKLAHOMA STATE UNIVERSITY   (United States)

^aw IZMIR UNIVERSITY OF ECONOMICS   (Turkey)

^ax INSTITUTE OF MICROBIOLOGY   (Czech Republic)

^ay CHARLES UNIVERSITY   (Czech Republic)

^az ST EDWARD'S UNIVERSITY   (United States)

^ba UNIVERSITY OF PUGET SOUND   (United States)

^bb HOKKAIDO UNIVERSITY   (Japan)

^bc TSINGHUA UNIVERSITY   (China)

^bd WASHINGTON STATE UNIVERSITY   (United States)

^be APPALACHIAN STATE UNIVERSITY   (United States)

^bf MARQUETTE UNIVERSITY   (United States)

^bg STAZIONE ZOOLOGICA ANTON DOHRN   (Italy)

more..

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ANIMAL COMMUNITY; CHLOROPLAST; CILIATE; EVOLUTION; GENETIC STRUCTURE; GENOME; GREEN ALGA; PHYLOGENETICS; PLANT COMMUNITY; PROTEIN;

ARTICLE; BIOGENESIS; CELL FUNCTION; CHLAMYDOMONAS REINHARDTII; CHLOROPLAST; CONTROLLED STUDY; EUKARYOTIC CELL; FLAGELLUM; GENE FUNCTION; GENE IDENTIFICATION; GENE SEQUENCE; NONHUMAN; PHOTOSYNTHESIS; PLANT EVOLUTION; PLANT GENETICS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE;

ALGAL PROTEINS; ANIMALS; CHLAMYDOMONAS REINHARDTII; CHLOROPLASTS; COMPUTATIONAL BIOLOGY; DNA, ALGAL; EVOLUTION; FLAGELLA; GENES; GENOME; GENOMICS; MEMBRANE TRANSPORT PROTEINS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PHOTOSYNTHESIS; PHYLOGENY; PLANTS; PROTEOME; SEQUENCE ANALYSIS, DNA;

ANIMALIA; CHLAMYDOMONAS; CHLAMYDOMONAS REINHARDTII; CHLOROPHYTA; EMBRYOPHYTA; EUKARYOTA;

EID: 35348896591     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1143609     Document Type: Article

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57. We thank R. Howson for help with drawing figures, E. Begovic and S. Nicholls for comments on the manuscript. SM is supported by the grants NIH GM42143, DOE DE-FG02-04ER15529 USDA 2004-35318-1495. SP and DSR are funded by USDA and DOE, Joint Genome Institute. ARG is supported by USDA 2003-35100-13235, DOE DE-AC36-99GO10337 and the NSFfunded Chlamydomonas Genome Project, MCB 0235878. SJK was supported in part by a Ruth L. Kirschstein National Research Service Award GM07185. The authors declare they have no conflicts of interest. Genome assembly together with predicted gene models and and annotations were deposited at DDBJ/EMBL/GenBank under the project accession ABCN00000000. Since manual curation continues, some models or anotations are changing and the latest set of gene models and annotations is available from www.jgi.doe.gov/chlamy. The most recent set, which includes a number of changes compared with the frozen set used for this analysis, was submitted as the first version, ABCN01000000.