메뉴 건너뛰기




Volumn 217, Issue , 2016, Pages 59-67

Microbial community dynamics in thermophilic undefined milk starter cultures

Author keywords

Diversity; Lactobacillus delbrueckii; Natural milk cultures; Next generation sequencing; Streptococcus thermophilus

Indexed keywords

ACID; GALACTOSE; LACTIC ACID; LACTOSE; PHOSPHATASE; PHOSPHOSERINE PHOSPHATASE; RNA 16S;

EID: 84944810852     PISSN: 01681605     EISSN: 18793460     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2015.10.014     Document Type: Article
Times cited : (34)

References (48)
  • 1
    • 0036965056 scopus 로고    scopus 로고
    • 16S-23S rDNA intergenic spacer region polymorphism of Lactococcus garvieae, Lactococcus raffinolactis and Lactococcus lactis as revealed by PCR and nucleotide sequence analysis
    • Blaiotta G., Pepe O., Mauriello G., Villani F., Andolfi R., Moschetti G. 16S-23S rDNA intergenic spacer region polymorphism of Lactococcus garvieae, Lactococcus raffinolactis and Lactococcus lactis as revealed by PCR and nucleotide sequence analysis. Syst. Appl. Microbiol. 2002, 25:520-527.
    • (2002) Syst. Appl. Microbiol. , vol.25 , pp. 520-527
    • Blaiotta, G.1    Pepe, O.2    Mauriello, G.3    Villani, F.4    Andolfi, R.5    Moschetti, G.6
  • 4
    • 16344389891 scopus 로고    scopus 로고
    • PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order
    • Caraux G., Pinloche S. PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order. Bioinformatics 2005, 21:1280-1281.
    • (2005) Bioinformatics , vol.21 , pp. 1280-1281
    • Caraux, G.1    Pinloche, S.2
  • 5
    • 84926313781 scopus 로고    scopus 로고
    • Ecological aspects of phage contamination in natural whey and milk starters
    • Nova Science Publishers, Hauppage, NY, USA, A. Quiberoni, J.A. Reinheimer (Eds.)
    • Carminati D., Zago M., Giraffa G. Ecological aspects of phage contamination in natural whey and milk starters. Bacteriophages in Dairy Processing 2012, 79-97. Nova Science Publishers, Hauppage, NY, USA. A. Quiberoni, J.A. Reinheimer (Eds.).
    • (2012) Bacteriophages in Dairy Processing , pp. 79-97
    • Carminati, D.1    Zago, M.2    Giraffa, G.3
  • 6
    • 84944715624 scopus 로고    scopus 로고
    • Comparison of culture-dependent and -independent methods for bacterial community monitoring during Montasio cheese manufacturing
    • Carraro L., Maifreni M., Bartolomeoli I., Martino M.E., Novelli E., Frigo F., Marino M., Cardazzo B. Comparison of culture-dependent and -independent methods for bacterial community monitoring during Montasio cheese manufacturing. Res. Microbiol. 2011, 106:1234-1238.
    • (2011) Res. Microbiol. , vol.106 , pp. 1234-1238
    • Carraro, L.1    Maifreni, M.2    Bartolomeoli, I.3    Martino, M.E.4    Novelli, E.5    Frigo, F.6    Marino, M.7    Cardazzo, B.8
  • 7
    • 0028808530 scopus 로고
    • Development of RAPD protocol for typing of strains of lactic acid bacteria and enterococci
    • Cocconcelli P.S., Porro D., Galandini S., Senini L. Development of RAPD protocol for typing of strains of lactic acid bacteria and enterococci. Lett. Appl. Microbiol. 1995, 21:376-379.
    • (1995) Lett. Appl. Microbiol. , vol.21 , pp. 376-379
    • Cocconcelli, P.S.1    Porro, D.2    Galandini, S.3    Senini, L.4
  • 8
    • 0030746791 scopus 로고    scopus 로고
    • Use of RAPD and 16S rDNA sequencing for the study of Lactobacillus population dynamics in natural whey culture
    • Cocconcelli P., Parisi M., Senini L., Bottazzi V. Use of RAPD and 16S rDNA sequencing for the study of Lactobacillus population dynamics in natural whey culture. Lett. Appl. Microbiol. 1997, 25:8-12.
    • (1997) Lett. Appl. Microbiol. , vol.25 , pp. 8-12
    • Cocconcelli, P.1    Parisi, M.2    Senini, L.3    Bottazzi, V.4
  • 9
    • 84857566372 scopus 로고    scopus 로고
    • High-throughput sequencing of PCR products tagged with universal primers using 454 life sciences systems
    • (Chapter 7, Unit 7.5)
    • Daigle D., Simen B.B., Pochart P. High-throughput sequencing of PCR products tagged with universal primers using 454 life sciences systems. Current Protocols in Molecular Biology 2011, (Chapter 7, Unit 7.5).
    • (2011) Current Protocols in Molecular Biology
    • Daigle, D.1    Simen, B.B.2    Pochart, P.3
  • 11
    • 84896098847 scopus 로고    scopus 로고
    • A selected core microbiome drives the early stages of three popular Italian cheese manufactures
    • De Filippis F., La Storia A., Stellato G., Gatti M., Ercolini D. A selected core microbiome drives the early stages of three popular Italian cheese manufactures. PLoS One 2014, 9:e89680. 10.1371/journal.pone.0089680.
    • (2014) PLoS One , vol.9 , pp. e89680
    • De Filippis, F.1    La Storia, A.2    Stellato, G.3    Gatti, M.4    Ercolini, D.5
  • 13
    • 49449096246 scopus 로고    scopus 로고
    • Multiplex fast real-time PCR for quantitative detection and identification of cos- and pac-type Streptococcus thermophilus bacteriophages
    • Del Rio B., Martin M.C., Martinez N., Magadan A.H., Alvarez M.A. Multiplex fast real-time PCR for quantitative detection and identification of cos- and pac-type Streptococcus thermophilus bacteriophages. Appl. Environ. Microbiol. 2008, 74:4779-4781.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 4779-4781
    • Del Rio, B.1    Martin, M.C.2    Martinez, N.3    Magadan, A.H.4    Alvarez, M.A.5
  • 14
    • 84878925458 scopus 로고    scopus 로고
    • Diversity of thermophilic bacteria in raw, pasteurized and selectively-cultured milk, as assessed by culturing, PCR-DGGE and pyrosequencing
    • Delgado S., Rachid C.T.C.C., Fernández E., Rychlik T., Alegría A., Peixoto R.S., Mayo B. Diversity of thermophilic bacteria in raw, pasteurized and selectively-cultured milk, as assessed by culturing, PCR-DGGE and pyrosequencing. Food Microbiol. 2013, 36:103-111.
    • (2013) Food Microbiol. , vol.36 , pp. 103-111
    • Delgado, S.1    Rachid, C.T.C.C.2    Fernández, E.3    Rychlik, T.4    Alegría, A.5    Peixoto, R.S.6    Mayo, B.7
  • 15
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar R.C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010, 26:2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 16
    • 84855909508 scopus 로고    scopus 로고
    • Genotyping of Streptococcus thermophilus strains isolated from traditional Egyptian dairy products by sequence analysis of the phosphoserine phosphatase (serB) gene with phenotypic characterizations of the strains
    • El-Sharoud W.M., Delorme C., Darwish M.S., Renault P. Genotyping of Streptococcus thermophilus strains isolated from traditional Egyptian dairy products by sequence analysis of the phosphoserine phosphatase (serB) gene with phenotypic characterizations of the strains. J. Appl. Microbiol. 2012, 112:329-337.
    • (2012) J. Appl. Microbiol. , vol.112 , pp. 329-337
    • El-Sharoud, W.M.1    Delorme, C.2    Darwish, M.S.3    Renault, P.4
  • 17
    • 1242329162 scopus 로고    scopus 로고
    • PCR-DGGE fingerprints of microbial succession during a manufacture of traditional water buffalo mozzarella cheese
    • Ercolini D., Mauriello G., Blaiotta G., Moschetti G., Coppola S. PCR-DGGE fingerprints of microbial succession during a manufacture of traditional water buffalo mozzarella cheese. J. Appl. Microbiol. 2004, 96:263-270.
    • (2004) J. Appl. Microbiol. , vol.96 , pp. 263-270
    • Ercolini, D.1    Mauriello, G.2    Blaiotta, G.3    Moschetti, G.4    Coppola, S.5
  • 18
    • 14644417859 scopus 로고    scopus 로고
    • Sequence heterogeneity in the lacSZ operon of Streptococcus thermophilus and its use in PCR systems for strain differentiation
    • Ercolini D., Fusco V., Blaiotta G., Coppola S. Sequence heterogeneity in the lacSZ operon of Streptococcus thermophilus and its use in PCR systems for strain differentiation. Res. Microbiol. 2005, 156:161-172.
    • (2005) Res. Microbiol. , vol.156 , pp. 161-172
    • Ercolini, D.1    Fusco, V.2    Blaiotta, G.3    Coppola, S.4
  • 19
    • 43549104205 scopus 로고    scopus 로고
    • Microbial diversity in natural whey cultures used for the production of Caciocavallo Silano PDO cheese
    • Ercolini D., Frisso G., Mauriello G., Salvatore F., Coppola S. Microbial diversity in natural whey cultures used for the production of Caciocavallo Silano PDO cheese. Int. J. Food Microbiol. 2008, 124:164-170.
    • (2008) Int. J. Food Microbiol. , vol.124 , pp. 164-170
    • Ercolini, D.1    Frisso, G.2    Mauriello, G.3    Salvatore, F.4    Coppola, S.5
  • 20
    • 84868610117 scopus 로고    scopus 로고
    • Remake by high-throughput sequencing of the microbiota involved in the production of water buffalo mozzarella cheese
    • Ercolini D., De Filippis F., La Storia A., Iacono M. Remake by high-throughput sequencing of the microbiota involved in the production of water buffalo mozzarella cheese. Appl. Environ. Microbiol. 2012, 78:8142-8145.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 8142-8145
    • Ercolini, D.1    De Filippis, F.2    La Storia, A.3    Iacono, M.4
  • 22
    • 0042381494 scopus 로고    scopus 로고
    • Biodiversity in Lactobacillus helveticus strains present in natural whey starter used for Parmigiano Reggiano cheese
    • Gatti M., Lazzi C., Rossetti L., Mucchetti G., Neviani E. Biodiversity in Lactobacillus helveticus strains present in natural whey starter used for Parmigiano Reggiano cheese. J. Appl. Microbiol. 2003, 95:463-470.
    • (2003) J. Appl. Microbiol. , vol.95 , pp. 463-470
    • Gatti, M.1    Lazzi, C.2    Rossetti, L.3    Mucchetti, G.4    Neviani, E.5
  • 23
    • 84892675100 scopus 로고    scopus 로고
    • Invited review: microbial evolution in raw-milk, long-ripened cheeses produced using undefined natural whey starters
    • Gatti M., Bottari B., Lazzi C., Neviani E., Mucchetti G. Invited review: microbial evolution in raw-milk, long-ripened cheeses produced using undefined natural whey starters. J. Dairy Sci. 2014, 97:573-591.
    • (2014) J. Dairy Sci. , vol.97 , pp. 573-591
    • Gatti, M.1    Bottari, B.2    Lazzi, C.3    Neviani, E.4    Mucchetti, G.5
  • 24
    • 73449093124 scopus 로고    scopus 로고
    • Streptococcus thermophilus strains: multifunctional lactic acid bacteria
    • Iyer R., Tomar S., Uma Maheswari T., Singh R. Streptococcus thermophilus strains: multifunctional lactic acid bacteria. Int. Dairy J. 2010, 20:133-141.
    • (2010) Int. Dairy J. , vol.20 , pp. 133-141
    • Iyer, R.1    Tomar, S.2    Uma Maheswari, T.3    Singh, R.4
  • 25
    • 1542299660 scopus 로고    scopus 로고
    • Evaluation of bacterial communities belonging to natural whey starters for Grana Padano cheese by length heterogeneity-PCR
    • Lazzi C., Rossetti L., Zago M., Neviani E., Giraffa G. Evaluation of bacterial communities belonging to natural whey starters for Grana Padano cheese by length heterogeneity-PCR. J. Appl. Microbiol. 2004, 96:481-490.
    • (2004) J. Appl. Microbiol. , vol.96 , pp. 481-490
    • Lazzi, C.1    Rossetti, L.2    Zago, M.3    Neviani, E.4    Giraffa, G.5
  • 26
    • 0022799268 scopus 로고
    • Improved media for differentiation of rods and cocci in yogurt
    • Matalon M.E., Sandine W.E. Improved media for differentiation of rods and cocci in yogurt. J. Dairy Sci. 1986, 69:2569-2576.
    • (1986) J. Dairy Sci. , vol.69 , pp. 2569-2576
    • Matalon, M.E.1    Sandine, W.E.2
  • 28
    • 3242876311 scopus 로고    scopus 로고
    • BLAST: at the core of a powerful and diverse set of sequence analysis tools
    • McGinnis S., Madden T.L. BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res. 2004, 32:W20-W25.
    • (2004) Nucleic Acids Res. , vol.32 , pp. W20-W25
    • McGinnis, S.1    Madden, T.L.2
  • 30
    • 0344065379 scopus 로고    scopus 로고
    • Long term use of a Cheddar starter and development of phages with homology to its bacteria
    • Nielsen W. Long term use of a Cheddar starter and development of phages with homology to its bacteria. Int. Dairy J. 1998, 8:1003-1009.
    • (1998) Int. Dairy J. , vol.8 , pp. 1003-1009
    • Nielsen, W.1
  • 31
    • 33748090563 scopus 로고    scopus 로고
    • Diversity and dynamics of microbial communities in natural and mixed starter cultures
    • Parente E. Diversity and dynamics of microbial communities in natural and mixed starter cultures. Aust. J. Dairy Technol. 2006, 61:44-51.
    • (2006) Aust. J. Dairy Technol. , vol.61 , pp. 44-51
    • Parente, E.1
  • 32
    • 33746102645 scopus 로고    scopus 로고
    • Starter cultures: general aspects
    • Elsevier Academic Press, San Diego, CA, P.F. Fox, P.L.H. McSweeney, T.M. Cogan, T.P. Guinee (Eds.)
    • Parente E., Cogan T.M. Starter cultures: general aspects. Cheese: Chemistry, Physics, Microbiology 2004, 1:123-148. Elsevier Academic Press, San Diego, CA. P.F. Fox, P.L.H. McSweeney, T.M. Cogan, T.P. Guinee (Eds.).
    • (2004) Cheese: Chemistry, Physics, Microbiology , vol.1 , pp. 123-148
    • Parente, E.1    Cogan, T.M.2
  • 33
    • 0031582835 scopus 로고    scopus 로고
    • Characterization of natural starter cultures used in the manufacture of Pasta Filata cheese in Basilicata (southern Italy)
    • Parente E., Rota M., Ricciardi A., Clementi F. Characterization of natural starter cultures used in the manufacture of Pasta Filata cheese in Basilicata (southern Italy). Int. Dairy J. 1997, 7:775-783.
    • (1997) Int. Dairy J. , vol.7 , pp. 775-783
    • Parente, E.1    Rota, M.2    Ricciardi, A.3    Clementi, F.4
  • 36
    • 77956304094 scopus 로고    scopus 로고
    • Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
    • Reeder J., Knight R. Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nat. Methods 2010, 7:668-669.
    • (2010) Nat. Methods , vol.7 , pp. 668-669
    • Reeder, J.1    Knight, R.2
  • 38
    • 26644438794 scopus 로고    scopus 로고
    • Rapid identification of dairy lactic acid bacteria by M13-generated, RAPD-PCR fingerprint databases
    • Rossetti L., Giraffa G. Rapid identification of dairy lactic acid bacteria by M13-generated, RAPD-PCR fingerprint databases. J. Microbiol. Methods 2005, 63:135-144.
    • (2005) J. Microbiol. Methods , vol.63 , pp. 135-144
    • Rossetti, L.1    Giraffa, G.2
  • 40
    • 40649087393 scopus 로고    scopus 로고
    • Whey starter for Grana Padano cheese: effect of technological parameters on viability and composition of the microbial community
    • Santarelli M., Gatti M., Lazzi C., Bernini V., Zapparoli G.A., Zapparoli G.A., Neviani E. Whey starter for Grana Padano cheese: effect of technological parameters on viability and composition of the microbial community. J. Dairy Sci. 2008, 91:883-891.
    • (2008) J. Dairy Sci. , vol.91 , pp. 883-891
    • Santarelli, M.1    Gatti, M.2    Lazzi, C.3    Bernini, V.4    Zapparoli, G.A.5    Zapparoli, G.A.6    Neviani, E.7
  • 41
    • 67349087893 scopus 로고    scopus 로고
    • Evaluation of a facile method of template DNA preparation for PCR-based detection and typing of lactic acid bacteria
    • Singh A., Ramesh A. Evaluation of a facile method of template DNA preparation for PCR-based detection and typing of lactic acid bacteria. Food Microbiol. 2009, 26:504-513.
    • (2009) Food Microbiol. , vol.26 , pp. 504-513
    • Singh, A.1    Ramesh, A.2
  • 43
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki M.T., Giovannoni S.J. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 1996, 62:625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 44
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 1993, 10:512-526.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 46
    • 0032832868 scopus 로고    scopus 로고
    • Use of PCR-based methods for rapid differentiation of Lactobacillus delbrueckii subsp.bulgaricus and L. delbrueckii subsp. lactis
    • Torriani S., Zapparoli G., Dellaglio F. Use of PCR-based methods for rapid differentiation of Lactobacillus delbrueckii subsp.bulgaricus and L. delbrueckii subsp. lactis. Appl. Environ. Microbiol. 1999, 65:4351-4356.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4351-4356
    • Torriani, S.1    Zapparoli, G.2    Dellaglio, F.3
  • 47
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q., Garrity G.M., Tiedje J.M., Cole J.R. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 2007, 73:5261-5267. 10.1128/AEM.00062-07.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 48
    • 76949089582 scopus 로고    scopus 로고
    • Characterization of Streptococcus thermophilus lytic bacteriophages from mozzarella cheese plants
    • Zinno P., Janzen T., Bennedsen M., Ercolini D., Mauriello G. Characterization of Streptococcus thermophilus lytic bacteriophages from mozzarella cheese plants. Int. J. Food Microbiol. 2010, 138:137-144.
    • (2010) Int. J. Food Microbiol. , vol.138 , pp. 137-144
    • Zinno, P.1    Janzen, T.2    Bennedsen, M.3    Ercolini, D.4    Mauriello, G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.