메뉴 건너뛰기




Volumn 21, Issue 19, 2015, Pages 4461-4472

Subclonal genomic architectures of primary and metastatic colorectal cancer based on intratumoral genetic heterogeneity

Author keywords

[No Author keywords available]

Indexed keywords

APC PROTEIN; MYC PROTEIN; PROTEIN P53; SMAD4 PROTEIN; SOMATOMEDIN B; MICROSATELLITE DNA;

EID: 84944468397     PISSN: 10780432     EISSN: 15573265     Source Type: Journal    
DOI: 10.1158/1078-0432.CCR-14-2413     Document Type: Article
Times cited : (148)

References (48)
  • 2
    • 33744944023 scopus 로고    scopus 로고
    • Guidelines for colonoscopy surveillance after polypectomy: A consensus update by the US Multi-Society Task Force on Colorectal Cancer and the American Cancer Society
    • Winawer SJ, Zauber AG, Fletcher RH, Stillman JS, O'brien MJ, Levin B, et al. Guidelines for colonoscopy surveillance after polypectomy: a consensus update by the US Multi-Society Task Force on Colorectal Cancer and the American Cancer Society. CA Cancer J Clin 2006; 56:143-59.
    • (2006) CA Cancer J Clin , vol.56 , pp. 143-159
    • Winawer, S.J.1    Zauber, A.G.2    Fletcher, R.H.3    Stillman, J.S.4    O'Brien, M.J.5    Levin, B.6
  • 3
    • 0017167185 scopus 로고
    • The clonal evolution of tumor cell populations
    • Nowell PC. The clonal evolution of tumor cell populations. Science 1976;194:23-8.
    • (1976) Science , vol.194 , pp. 23-28
    • Nowell, P.C.1
  • 4
    • 80054686286 scopus 로고    scopus 로고
    • Tumor metastasis: Molecular insights and evolving paradigms
    • Valastyan S, Weinberg RA. Tumor metastasis: molecular insights and evolving paradigms. Cell 2011;147:275-92.
    • (2011) Cell , vol.147 , pp. 275-292
    • Valastyan, S.1    Weinberg, R.A.2
  • 5
    • 84867744264 scopus 로고    scopus 로고
    • Evolution of the cancer genome
    • Yates LR, Campbell PJ. Evolution of the cancer genome. Nat Rev Genet 2012;13:795-806.
    • (2012) Nat Rev Genet , vol.13 , pp. 795-806
    • Yates, L.R.1    Campbell, P.J.2
  • 6
    • 70349969478 scopus 로고    scopus 로고
    • Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution
    • Shah SP, Morin RD, Khattra J, Prentice L, Pugh T, Burleigh A, et al. Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. Nature 2009;461:809-13.
    • (2009) Nature , vol.461 , pp. 809-813
    • Shah, S.P.1    Morin, R.D.2    Khattra, J.3    Prentice, L.4    Pugh, T.5    Burleigh, A.6
  • 7
    • 77951139631 scopus 로고    scopus 로고
    • Genome remodelling in a basal-like breast cancer metastasis and xenograft
    • Ding L, Ellis MJ, Li S, Larson DE, Chen K, Wallis JW, et al. Genome remodelling in a basal-like breast cancer metastasis and xenograft. Nature 2010;464:999-1005.
    • (2010) Nature , vol.464 , pp. 999-1005
    • Ding, L.1    Ellis, M.J.2    Li, S.3    Larson, D.E.4    Chen, K.5    Wallis, J.W.6
  • 8
    • 84885092663 scopus 로고    scopus 로고
    • Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling
    • Bashashati A, Ha G, Tone A, Ding J, Prentice LM, Roth A, et al. Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling. J Pathol 2013; 231:21-34.
    • (2013) J Pathol , vol.231 , pp. 21-34
    • Bashashati, A.1    Ha, G.2    Tone, A.3    Ding, J.4    Prentice, L.M.5    Roth, A.6
  • 9
    • 84907855592 scopus 로고    scopus 로고
    • Spatial and temporal diversity in genomic instability processes defines lung cancer evolution
    • de Bruin EC, McGranahan N, Mitter R, Salm M, Wedge DC, Yates L, et al. Spatial and temporal diversity in genomic instability processes defines lung cancer evolution. Science 2014;346:251-6.
    • (2014) Science , vol.346 , pp. 251-256
    • De Bruin, E.C.1    McGranahan, N.2    Mitter, R.3    Salm, M.4    Wedge, D.C.5    Yates, L.6
  • 11
    • 84895876130 scopus 로고    scopus 로고
    • Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing
    • Gerlinger M, Horswell S, Larkin J, Rowan AJ, Salm MP, Varela I, et al. Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing. Nat Genet 2014; 46:225-33.
    • (2014) Nat Genet , vol.46 , pp. 225-233
    • Gerlinger, M.1    Horswell, S.2    Larkin, J.3    Rowan, A.J.4    Salm, M.P.5    Varela, I.6
  • 12
    • 84904167564 scopus 로고    scopus 로고
    • Regional biases in mutation screening due to intratumoural heterogeneity of prostate cancer
    • Kim TM, Jung SH, Baek IP, Lee SH, Choi YJ, Lee JY, et al. Regional biases in mutation screening due to intratumoural heterogeneity of prostate cancer. J Pathol 2014;233:425-35.
    • (2014) J Pathol , vol.233 , pp. 425-435
    • Kim, T.M.1    Jung, S.H.2    Baek, I.P.3    Lee, S.H.4    Choi, Y.J.5    Lee, J.Y.6
  • 13
    • 84871920313 scopus 로고    scopus 로고
    • Exome sequencing of prostate cancer supports the hypothesis of independent tumour origins
    • Lindberg J, Klevebring D, Liu W, Neiman M, Xu J, Wiklund P, et al. Exome sequencing of prostate cancer supports the hypothesis of independent tumour origins. Eur Urol 2013;63:347-53.
    • (2013) Eur Urol , vol.63 , pp. 347-353
    • Lindberg, J.1    Klevebring, D.2    Liu, W.3    Neiman, M.4    Xu, J.5    Wiklund, P.6
  • 15
    • 84907808265 scopus 로고    scopus 로고
    • Intratumor heterogeneity in localized lung adenocarcinomas delineated by multiregion sequencing
    • Zhang J, Fujimoto J, Zhang J, Wedge DC, Song X, Zhang J, et al. Intratumor heterogeneity in localized lung adenocarcinomas delineated by multiregion sequencing. Science 2014;346:256-9.
    • (2014) Science , vol.346 , pp. 256-259
    • Zhang, J.1    Fujimoto, J.2    Zhang, J.3    Wedge, D.C.4    Song, X.5    Zhang, J.6
  • 16
    • 84856013431 scopus 로고    scopus 로고
    • Clonal evolution in cancer
    • Greaves M, Maley CC. Clonal evolution in cancer. Nature 2012;481: 306-13.
    • (2012) Nature , vol.481 , pp. 306-313
    • Greaves, M.1    Maley, C.C.2
  • 17
    • 78049398107 scopus 로고    scopus 로고
    • Distant metastasis occurs late during the genetic evolution of pancreatic cancer
    • Yachida S, Jones S, Bozic I, Antal T, Leary R, Fu B, et al. Distant metastasis occurs late during the genetic evolution of pancreatic cancer. Nature 2010;467:1114-7.
    • (2010) Nature , vol.467 , pp. 1114-1117
    • Yachida, S.1    Jones, S.2    Bozic, I.3    Antal, T.4    Leary, R.5    Fu, B.6
  • 18
    • 84865713992 scopus 로고    scopus 로고
    • A five-marker panel in a multiplex PCR accurately detects microsatellite instability-high colorectal tumors without control DNA
    • Patil DT, Bronner MP, Portier BP, Fraser CR, Plesec TP, Liu X. A five-marker panel in a multiplex PCR accurately detects microsatellite instability-high colorectal tumors without control DNA. Diagn Mol Pathol 2012;21: 127-33.
    • (2012) Diagn Mol Pathol , vol.21 , pp. 127-133
    • Patil, D.T.1    Bronner, M.P.2    Portier, B.P.3    Fraser, C.R.4    Plesec, T.P.5    Liu, X.6
  • 19
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009;25:1754-60.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 20
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • De Pristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 2011;43:491-8.
    • (2011) Nat Genet , vol.43 , pp. 491-498
    • De Pristo, M.A.1    Banks, E.2    Poplin, R.3    Garimella, K.V.4    Maguire, J.R.5    Hartl, C.6
  • 23
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
    • Wang K, Li M, Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 2010;38:e164.
    • (2010) Nucleic Acids Res , vol.38 , pp. e164
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 24
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang dW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009;4:44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 25
    • 12344259648 scopus 로고    scopus 로고
    • Analysis of array CGH data: From signal ratio to gain and loss of DNA regions
    • Hupe P, Stransky N, Thiery JP, Radvanyi F, Barillot E. Analysis of array CGH data: from signal ratio to gain and loss of DNA regions. Bioinformatics 2004;20:3413-22.
    • (2004) Bioinformatics , vol.20 , pp. 3413-3422
    • Hupe, P.1    Stransky, N.2    Thiery, J.P.3    Radvanyi, F.4    Barillot, E.5
  • 28
    • 84863229597 scopus 로고    scopus 로고
    • VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, Lin L, et al. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res 2012;22:568-76.
    • (2012) Genome Res , vol.22 , pp. 568-576
    • Koboldt, D.C.1    Zhang, Q.2    Larson, D.E.3    Shen, D.4    McLellan, M.D.5    Lin, L.6
  • 29
    • 84873391241 scopus 로고    scopus 로고
    • Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes
    • Kim TM, Xi R, Luquette LJ, Park RW, Johnson MD, Park PJ. Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes. Genome Res 2013;23:217-27.
    • (2013) Genome Res , vol.23 , pp. 217-227
    • Kim, T.M.1    Xi, R.2    Luquette, L.J.3    Park, R.W.4    Johnson, M.D.5    Park, P.J.6
  • 30
    • 77954772548 scopus 로고    scopus 로고
    • Analysis of the copy number profiles of several tumor samples from the same patient reveals the successive steps in tumorigenesis
    • Letouze E, Allory Y, Bollet MA, Radvanyi F, Guyon F. Analysis of the copy number profiles of several tumor samples from the same patient reveals the successive steps in tumorigenesis. Genome Biol 2010;11:R76.
    • (2010) Genome Biol , vol.11 , pp. R76
    • Letouze, E.1    Allory, Y.2    Bollet, M.A.3    Radvanyi, F.4    Guyon, F.5
  • 31
    • 84863922124 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of human colon and rectal cancer
    • The Cancer Genome Atlas Consortium. Comprehensive molecular characterization of human colon and rectal cancer. Nature 2012; 487:330-7.
    • (2012) Nature , vol.487 , pp. 330-337
  • 33
    • 77955363995 scopus 로고    scopus 로고
    • TP53 mutations in human cancers: Origins, consequences, and clinical use
    • Olivier M, Hollstein M, Hainaut P. TP53 mutations in human cancers: origins, consequences, and clinical use. Cold Spring Harb Perspect Biol 2010;2:a001008.
    • (2010) Cold Spring Harb Perspect Biol , vol.2 , pp. a001008
    • Olivier, M.1    Hollstein, M.2    Hainaut, P.3
  • 34
    • 80053385552 scopus 로고    scopus 로고
    • Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion
    • Bass AJ, Lawrence MS, Brace LE, Ramos AH, Drier Y, Cibulskis K, et al. Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion. Nat Genet 2011;43:964-8.
    • (2011) Nat Genet , vol.43 , pp. 964-968
    • Bass, A.J.1    Lawrence, M.S.2    Brace, L.E.3    Ramos, A.H.4    Drier, Y.5    Cibulskis, K.6
  • 35
    • 77949845433 scopus 로고    scopus 로고
    • Clonality assessment and clonal ordering of individual neoplastic crypts shows polyclonality of colorectal adenomas
    • Thirlwell C, Will OC, Domingo E, Graham TA, McDonald SA, Oukrif D, et al. Clonality assessment and clonal ordering of individual neoplastic crypts shows polyclonality of colorectal adenomas. Gastroenterology 2010;138:1441-54.
    • (2010) Gastroenterology , vol.138 , pp. 1441-1454
    • Thirlwell, C.1    Will, O.C.2    Domingo, E.3    Graham, T.A.4    McDonald, S.A.5    Oukrif, D.6
  • 37
    • 84897132007 scopus 로고    scopus 로고
    • Comparative genomic analysis of primary and synchronous metastatic colorectal cancers
    • Lee SY, Haq F, Kim D, Jun C, Jo HJ, Ahn SM, et al. Comparative genomic analysis of primary and synchronous metastatic colorectal cancers. PLoS One 2014;9:e90459.
    • (2014) PLoS One , vol.9 , pp. e90459
    • Lee, S.Y.1    Haq, F.2    Kim, D.3    Jun, C.4    Jo, H.J.5    Ahn, S.M.6
  • 38
    • 84865186133 scopus 로고    scopus 로고
    • Comparative genomic analysis of primary versus metastatic colorectal carcinomas
    • Vakiani E, Janakiraman M, Shen R, Sinha R, Zeng Z, Shia J, et al. Comparative genomic analysis of primary versus metastatic colorectal carcinomas. J Clin Oncol 2012;30:2956-2962.
    • (2012) J Clin Oncol , vol.30 , pp. 2956-2962
    • Vakiani, E.1    Janakiraman, M.2    Shen, R.3    Sinha, R.4    Zeng, Z.5    Shia, J.6
  • 39
    • 0025312728 scopus 로고
    • A genetic model for colorectal tumorigenesis
    • Fearon ER, Vogelstein B. A genetic model for colorectal tumorigenesis. Cell 1990;61:759-67.
    • (1990) Cell , vol.61 , pp. 759-767
    • Fearon, E.R.1    Vogelstein, B.2
  • 42
    • 84866728909 scopus 로고    scopus 로고
    • Chromothripsis and cancer: Causes and consequences of chromosome shattering
    • Forment JV, Kaidi A, Jackson SP. Chromothripsis and cancer: causes and consequences of chromosome shattering. Nat Rev Cancer 2012;12: 663-70.
    • (2012) Nat Rev Cancer , vol.12 , pp. 663-670
    • Forment, J.V.1    Kaidi, A.2    Jackson, S.P.3
  • 43
    • 80054698731 scopus 로고    scopus 로고
    • Chromothripsis is a common mechanism driving genomic rearrangements in primary and metastatic colorectal cancer
    • Kloosterman WP, Hoogstraat M, Paling O, Tavakoli-Yaraki M, Renkens I, Vermaat JS, et al. Chromothripsis is a common mechanism driving genomic rearrangements in primary and metastatic colorectal cancer. Genome Biol 2011;12:R103.
    • (2011) Genome Biol , vol.12 , pp. R103
    • Kloosterman, W.P.1    Hoogstraat, M.2    Paling, O.3    Tavakoli-Yaraki, M.4    Renkens, I.5    Vermaat, J.S.6
  • 47
    • 70350785179 scopus 로고    scopus 로고
    • Ubiquitin ligase Nedd4L targets activated Smad2/3 to limit TGF-b signaling
    • Gao S, Alarcon C, Sapkota G, Rahman S, Chen PY, Goerner N, et al. Ubiquitin ligase Nedd4L targets activated Smad2/3 to limit TGF-b signaling. Mol Cell 2009;36:457-68.
    • (2009) Mol Cell , vol.36 , pp. 457-468
    • Gao, S.1    Alarcon, C.2    Sapkota, G.3    Rahman, S.4    Chen, P.Y.5    Goerner, N.6
  • 48
    • 0032547895 scopus 로고    scopus 로고
    • TGFb signaling is necessary for carcinoma cell invasiveness and metastasis
    • Oft M, Heider KH, Beug H. TGFb signaling is necessary for carcinoma cell invasiveness and metastasis. Curr Biol 1998;8:1243-52.
    • (1998) Curr Biol , vol.8 , pp. 1243-1252
    • Oft, M.1    Heider, K.H.2    Beug, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.