-
1
-
-
0033936751
-
Naturally occurring variation in Arabidopsis: An underexploited resource for plant genetics
-
Alonso-Blanco, C., and Koornneef, M. (2000). Naturally occurring variation in Arabidopsis: an underexploited resource for plant genetics. Trends Plant Sci. 5: 22-29.
-
(2000)
Trends Plant Sci
, vol.5
, pp. 22-29
-
-
Alonso-Blanco, C.1
Koornneef, M.2
-
2
-
-
35948940895
-
Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans
-
Begun, D.J., et al. (2007). Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biol. 5: e310.
-
(2007)
Plos Biol
, vol.5
-
-
Begun, D.J.1
-
3
-
-
84908165002
-
The Chlamydomonas genome project: A decade on
-
Blaby, I.K., et al. (2014). The Chlamydomonas genome project: a decade on. Trends Plant Sci. 19: 672-680.
-
(2014)
Trends Plant Sci
, vol.19
, pp. 672-680
-
-
Blaby, I.K.1
-
4
-
-
80054907931
-
Mutagenesis and phenotypic selection as a strategy toward domestication of Chlamydomonas reinhardtii strains for improved performance in photobioreactors
-
Bonente, G., Formighieri, C., Mantelli, M., Catalanotti, C., Giuliano, G., Morosinotto, T., and Bassi, R. (2011). Mutagenesis and phenotypic selection as a strategy toward domestication of Chlamydomonas reinhardtii strains for improved performance in photobioreactors. Photosynth. Res. 108: 107-120.
-
(2011)
Photosynth. Res
, vol.108
, pp. 107-120
-
-
Bonente, G.1
Formighieri, C.2
Mantelli, M.3
Catalanotti, C.4
Giuliano, G.5
Morosinotto, T.6
Bassi, R.7
-
5
-
-
72049083209
-
Biofuels from microalgae-A review of technologies for production, processing, and extractions of biofuels and co-products
-
Brennan, L., and Owende, P. (2010). Biofuels from microalgae-A review of technologies for production, processing, and extractions of biofuels and co-products. Renew. Sustain. Energy Rev. 14: 557-577.
-
(2010)
Renew. Sustain. Energy Rev
, vol.14
, pp. 557-577
-
-
Brennan, L.1
Owende, P.2
-
6
-
-
42549103340
-
LysM, a widely distributed protein motif for binding to (Peptido)glycans
-
Buist, G., Steen, A., Kok, J., and Kuipers, O.P. (2008). LysM, a widely distributed protein motif for binding to (peptido)glycans. Mol. Microbiol. 68: 838-847.
-
(2008)
Mol. Microbiol
, vol.68
, pp. 838-847
-
-
Buist, G.1
Steen, A.2
Kok, J.3
Kuipers, O.P.4
-
7
-
-
80053384429
-
Whole-genome sequencing of multiple Arabidopsis thaliana populations
-
Cao, J., et al. (2011). Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat. Genet. 43: 956-963.
-
(2011)
Nat. Genet
, vol.43
, pp. 956-963
-
-
Cao, J.1
-
8
-
-
84979299166
-
Microalgal metabolic network model refinement through high throughput functional metabolic profiling
-
Chaiboonchoe, A., Dohai, B.S., Cai, H., Nelson, D.R., Jijakli, K., and Salehi-Ashtiani, K. (2014). Microalgal metabolic network model refinement through high throughput functional metabolic profiling. Front. Bioeng. Biotechnol. 2: 1-12.
-
(2014)
Front. Bioeng. Biotechnol
, vol.2
, pp. 1-12
-
-
Chaiboonchoe, A.1
Dohai, B.S.2
Cai, H.3
Nelson, D.R.4
Jijakli, K.5
Salehi-Ashtiani, K.6
-
9
-
-
84863602540
-
Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same age
-
Chen, W.-H., Trachana, K., Lercher, M.J., and Bork, P. (2012). Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same age. Mol. Biol. Evol. 29: 1703-1706.
-
(2012)
Mol. Biol. Evol
, vol.29
, pp. 1703-1706
-
-
Chen, W.-H.1
Trachana, K.2
Lercher, M.J.3
Bork, P.4
-
10
-
-
84862506964
-
A program for an-notating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster
-
Cingolani, P., Platts, A., Wang, L.L., Coon, M., Nguyen, T., Wang, L., Land, S.J., Lu, X., and Ruden, D.M. (2012). A program for an-notating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster. Fly (Austin) 6: 80-92.
-
(2012)
Fly (Austin)
, vol.6
, pp. 80-92
-
-
Cingolani, P.1
Platts, A.2
Wang, L.L.3
Coon, M.4
Nguyen, T.5
Wang, L.6
Land, S.J.7
Lu, X.8
Ruden, D.M.9
-
11
-
-
34547108086
-
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana
-
Clark, R.M., et al. (2007). Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science 317: 338-342.
-
(2007)
Science
, vol.317
, pp. 338-342
-
-
Clark, R.M.1
-
12
-
-
84864340750
-
Whole-genome sequencing to identify mutants and polymorphisms in Chlamydomonas reinhardtii
-
Dutcher, S.K., Li, L., Lin, H., Meyer, L., Giddings, T.H., Kwan, A.L., and Lewis, B.L. (2012). Whole-genome sequencing to identify mutants and polymorphisms in Chlamydomonas reinhardtii. G3 (Bethesda) 2: 15-22.
-
(2012)
G3 (Bethesda)
, vol.2
, pp. 15-22
-
-
Dutcher, S.K.1
Li, L.2
Lin, H.3
Meyer, L.4
Giddings, T.H.5
Kwan, A.L.6
Lewis, B.L.7
-
13
-
-
34547681546
-
Inorganic nitrogen assimilation in Chlamydomonas
-
Fernandez, E., and Galvan, A. (2007). Inorganic nitrogen assimilation in Chlamydomonas. J. Exp. Bot. 58: 2279-2287.
-
(2007)
J. Exp. Bot
, vol.58
, pp. 2279-2287
-
-
Fernandez, E.1
Galvan, A.2
-
14
-
-
77951185385
-
Evolution of an expanded sex-determining locus in Volvox
-
Ferris, P., et al. (2010). Evolution of an expanded sex-determining locus in Volvox. Science 328: 351-354.
-
(2010)
Science
, vol.328
, pp. 351-354
-
-
Ferris, P.1
-
15
-
-
0000317482
-
Localization of nitrogen-assimilating enzymes in the chloroplast of Chlamydomonas reinhardtii
-
Fischer, P., and Klein, U. (1988). Localization of nitrogen-assimilating enzymes in the chloroplast of Chlamydomonas reinhardtii. Plant Physiol. 88: 947-952.
-
(1988)
Plant Physiol
, vol.88
, pp. 947-952
-
-
Fischer, P.1
Klein, U.2
-
16
-
-
0034943198
-
Over‐expression of cytosolic glutamine synthetase increases photosynthesis and growth at low nitrogen concentrations
-
Fuentes, S.I., Allen, D.J., Ortiz-Lopez, A., and Hernández, G. (2001). Over‐expression of cytosolic glutamine synthetase increases photosynthesis and growth at low nitrogen concentrations. J. Exp. Bot. 52: 1071-1081.
-
(2001)
J. Exp. Bot.
, vol.52
, pp. 1071-1081
-
-
Fuentes, S.I.1
Allen, D.J.2
Ortiz-Lopez, A.3
Hernández, G.4
-
17
-
-
84943782042
-
Chlamydomonas genome resource for laboratory strains reveals a mosaic of sequence variation, identifies true strain histories, and enables strain-specific studies
-
Gallaher, S.D., Fitz-Gibbon, S.T., Glaesener, A.G., Pellegrini, M., and Merchant, S.S. (2015). Chlamydomonas genome resource for laboratory strains reveals a mosaic of sequence variation, identifies true strain histories, and enables strain-specific studies. Plant Cell 27: 2335-2352.
-
(2015)
Plant Cell
, vol.27
, pp. 2335-2352
-
-
Gallaher, S.D.1
Fitz-Gibbon, S.T.2
Glaesener, A.G.3
Pellegrini, M.4
Merchant, S.S.5
-
18
-
-
80053132716
-
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
-
Gan, X., et al. (2011). Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477: 419-423.
-
(2011)
Nature
, vol.477
, pp. 419-423
-
-
Gan, X.1
-
19
-
-
84883613924
-
POPBAM: Tools for evolutionary analysis of short read sequence alignments
-
Garrigan, D. (2013). POPBAM: Tools for evolutionary analysis of short read sequence alignments. Evol. Bioinform. 9: 343-353.
-
(2013)
Evol. Bioinform
, vol.9
, pp. 343-353
-
-
Garrigan, D.1
-
20
-
-
0030613371
-
Experimental evolution in Chlamydomonas. I. Short-term selection in uniform and diverse environments
-
Graham, B. (1997). Experimental evolution in Chlamydomonas. I. Short-term selection in uniform and diverse environments. Heredity 78: 490-497.
-
(1997)
Heredity
, vol.78
, pp. 490-497
-
-
Graham, B.1
-
21
-
-
76549129029
-
Optimized detection of sequence variation in heterozygous genomes using DNA microarrays with isothermal-melting probes
-
Gresham, D., Curry, B., Ward, A., Gordon, D.B., Brizuela, L., Kruglyak, L., and Botstein, D. (2010). Optimized detection of sequence variation in heterozygous genomes using DNA microarrays with isothermal-melting probes. Proc. Natl. Acad. Sci. USA 107: 1482-1487.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 1482-1487
-
-
Gresham, D.1
Curry, B.2
Ward, A.3
Gordon, D.B.4
Brizuela, L.5
Kruglyak, L.6
Botstein, D.7
-
22
-
-
58149166731
-
The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast
-
Gresham, D., Desai, M.M., Tucker, C.M., Jenq, H.T., Pai, D.A., Ward, A., DeSevo, C.G., Botstein, D., and Dunham, M.J. (2008). The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. PLoS Genet. 4: e1000303.
-
(2008)
Plos Genet
, vol.4
-
-
Gresham, D.1
Desai, M.M.2
Tucker, C.M.3
Jenq, H.T.4
Pai, D.A.5
Ward, A.6
Desevo, C.G.7
Botstein, D.8
Dunham, M.J.9
-
23
-
-
0024025965
-
Extensive restriction fragment length polymorphisms in a new isolate of Chlamydomonas reinhardtii
-
Gross, C., Ranum, L.W., and Lefebvre, P. (1988). Extensive restriction fragment length polymorphisms in a new isolate of Chlamydomonas reinhardtii. Curr. Genet. 13: 503-508.
-
(1988)
Curr. Genet
, vol.13
, pp. 503-508
-
-
Gross, C.1
Ranum, L.W.2
Lefebvre, P.3
-
24
-
-
0347033256
-
Role of duplicate genes in genetic robustness against null mutations
-
Gu, Z., Steinmetz, L.M., Gu, X., Scharfe, C., Davis, R.W., and Li, W.-H. (2003). Role of duplicate genes in genetic robustness against null mutations. Nature 421: 63-66.
-
(2003)
Nature
, vol.421
, pp. 63-66
-
-
Gu, Z.1
Steinmetz, L.M.2
Gu, X.3
Scharfe, C.4
Davis, R.W.5
Li, W.-H.6
-
27
-
-
84878890581
-
Metabolic and cellular organization in evolutionarily diverse microalgae as related to biofuels production
-
Hildebrand, M., Abbriano, R.M., Polle, J.E.W., Traller, J.C., Trentacoste, E.M., Smith, S.R., and Davis, A.K. (2013). Metabolic and cellular organization in evolutionarily diverse microalgae as related to biofuels production. Curr. Opin. Chem. Biol. 17: 506-514.
-
(2013)
Curr. Opin. Chem. Biol
, vol.17
, pp. 506-514
-
-
Hildebrand, M.1
Abbriano, R.M.2
Polle, J.E.W.3
Traller, J.C.4
Trentacoste, E.M.5
Smith, S.R.6
Davis, A.K.7
-
28
-
-
0032487367
-
Chlamydomonas genetics, a tool for the study of bioenergetic pathways
-
Hippler, M., Redding, K., and Rochaix, J.D. (1998). Chlamydomonas genetics, a tool for the study of bioenergetic pathways. Biochim. Biophys. Acta 1367: 1-62.
-
(1998)
Biochim. Biophys. Acta
, vol.1367
, pp. 1-62
-
-
Hippler, M.1
Redding, K.2
Rochaix, J.D.3
-
29
-
-
84980236941
-
Chlamydomonas smithii sp. Nov. - A Chlamydomonas interfertile with Chlamydomonas reinhardtii
-
Hoshaw, R.W., and Ettl, H. (1966). Chlamydomonas smithii sp. nov. - A Chlamydomonas interfertile with Chlamydomonas reinhardtii. J. Phycol. 2: 93-96.
-
(1966)
J. Phycol
, vol.2
, pp. 93-96
-
-
Hoshaw, R.W.1
Ettl, H.2
-
30
-
-
84880787194
-
Bacterial adaptation through loss of function
-
Hottes, A.K., Freddolino, P.L., Khare, A., Donnell, Z.N., Liu, J.C., and Tavazole, S. (2013). Bacterial adaptation through loss of function. PLoS Genet. 9: e1003617.
-
(2013)
Plos Genet
, vol.9
-
-
Hottes, A.K.1
Freddolino, P.L.2
Khare, A.3
Donnell, Z.N.4
Liu, J.C.5
Tavazole, S.6
-
31
-
-
84873731493
-
Short read se- quencing in studies of natural variation and adaptation
-
Hunter, B., Wright, K., and Bomblies, K. (2013). Short read se- quencing in studies of natural variation and adaptation. Curr. Opin. Plant Biol. 16: 85-91.
-
(2013)
Curr. Opin. Plant Biol
, vol.16
, pp. 85-91
-
-
Hunter, B.1
Wright, K.2
Bomblies, K.3
-
32
-
-
84864374216
-
Genome-wide characterization of genetic variation in the unicellular, green alga Chlamydomonas reinhardtii
-
Jang, H., and Ehrenreich, I.M. (2012). Genome-wide characterization of genetic variation in the unicellular, green alga Chlamydomonas reinhardtii. PLoS One 7: e41307.
-
(2012)
Plos One
, vol.7
-
-
Jang, H.1
Ehrenreich, I.M.2
-
33
-
-
84929048842
-
Molecular techniques to interrogate and edit the Chlamydomonas nuclear genome
-
Jinkerson, R.E., and Jonikas, M.C. (2015). Molecular techniques to interrogate and edit the Chlamydomonas nuclear genome. Plant J. 82: 393-412.
-
(2015)
Plant J
, vol.82
, pp. 393-412
-
-
Jinkerson, R.E.1
Jonikas, M.C.2
-
34
-
-
84899518211
-
InterProScan 5: Genome-scale protein function classification
-
Jones, P., et al. (2014). InterProScan 5: Genome-scale protein function classification. Bioinformatics 30: 1236-1240.
-
(2014)
Bioinformatics
, vol.30
, pp. 1236-1240
-
-
Jones, P.1
-
35
-
-
0000732090
-
Evolution of protein molecules
-
H.N. MunroNew York: Academic Press
-
Jukes, T., and Cantor, C. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, H.N. Munro, ed (New York: Academic Press), pp. 571.
-
(1969)
Mammalian Protein Metabolism
-
-
Jukes, T.1
Cantor, C.2
-
36
-
-
33746582708
-
Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor
-
Kaku, H., Nishizawa, Y., Ishii-Minami, N., Akimoto-Tomiyama, C., Dohmae, N., Takio, K., Minami, E., and Shibuya, N. (2006). Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor. Proc. Natl. Acad. Sci. USA 103: 11086-11091.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 11086-11091
-
-
Kaku, H.1
Nishizawa, Y.2
Ishii-Minami, N.3
Akimoto-Tomiyama, C.4
Dohmae, N.5
Takio, K.6
Minami, E.7
Shibuya, N.8
-
37
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa, M., and Goto, S. (2000). KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28: 27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
38
-
-
79958730092
-
The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage
-
Karpowicz, S.J., Prochnik, S.E., Grossman, A.R., and Merchant, S.S. (2011). The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage. J. Biol. Chem. 286: 21427-21439.
-
(2011)
J. Biol. Chem
, vol.286
, pp. 21427-21439
-
-
Karpowicz, S.J.1
Prochnik, S.E.2
Grossman, A.R.3
Merchant, S.S.4
-
39
-
-
84873311500
-
RetroSeq: Trans- posable element discovery from next-generation sequencing data
-
Keane, T.M., Wong, K., and Adams, D.J. (2013). RetroSeq: trans- posable element discovery from next-generation sequencing data. Bioinformatics 29: 389-390.
-
(2013)
Bioinformatics
, vol.29
, pp. 389-390
-
-
Keane, T.M.1
Wong, K.2
Adams, D.J.3
-
40
-
-
0030873114
-
A test of neutrality based on interlocus associations
-
Kelly, J.K. (1997). A test of neutrality based on interlocus associations. Genetics 146: 1197-1206.
-
(1997)
Genetics
, vol.146
, pp. 1197-1206
-
-
Kelly, J.K.1
-
41
-
-
84893432387
-
Applications of next-generation sequencing to unravelling the evolutionary history of algae
-
Kim, K.M., Park, J.-H., Bhattacharya, D., and Yoon, H.S. (2014). Applications of next-generation sequencing to unravelling the evolutionary history of algae. Int. J. Syst. Evol. Microbiol. 64: 333-345.
-
(2014)
Int. J. Syst. Evol. Microbiol
, vol.64
, pp. 333-345
-
-
Kim, K.M.1
Park, J.-H.2
Bhattacharya, D.3
Yoon, H.S.4
-
42
-
-
0025117612
-
High-frequency nuclear transformation of Chlamydomonas reinhardtii
-
Kindle, K.L. (1990). High-frequency nuclear transformation of Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. USA 87: 1228-1232.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 1228-1232
-
-
Kindle, K.L.1
-
43
-
-
0002222776
-
HIV signature and sequence variation analysis
-
A.G. Rodrigo and G.H. LearnDordrecht, The Netherlands: Kluwer Academic Publishers
-
Korber, B. (2000). HIV signature and sequence variation analysis. In Computational Analysis of HIV Molecular Sequences, A.G. Rodrigo and G.H. Learn, eds (Dordrecht, The Netherlands: Kluwer Academic Publishers), pp.55-72.
-
(2000)
Computational Analysis of HIV Molecular Sequences
, pp. 55-72
-
-
Korber, B.1
-
44
-
-
78649479141
-
Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
-
Lam, H.-M., et al. (2010). Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat. Genet. 42: 1053-1059.
-
(2010)
Nat. Genet
, vol.42
, pp. 1053-1059
-
-
Lam, H.-M.1
-
45
-
-
84866690688
-
Revisiting an old riddle: What determines genetic diversity levels within species?
-
Leffler, E.M., Bullaughey, K., Matute, D.R., Meyer, W.K., Ségurel, L., Venkat, A., Andolfatto, P., and Przeworski, M. (2012). Revisiting an old riddle: What determines genetic diversity levels within species? PLoS Biol. 10: e1001388.
-
(2012)
Plos Biol
, vol.10
-
-
Leffler, E.M.1
Bullaughey, K.2
Matute, D.R.3
Meyer, W.K.4
Ségurel, L.5
Venkat, A.6
Olfatto, P.7
Przeworski, M.8
-
46
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H., and Durbin, R. (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
47
-
-
84883121798
-
Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing
-
Li, Y.H., et al. (2013). Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing. BMC Genomics 14: 579.
-
(2013)
BMC Genomics
, vol.14
-
-
Li, Y.H.1
-
48
-
-
84884693165
-
Whole genome sequencing identifies a deletion in protein phosphatase 2A that affects its stability and localization in Chlamydomonas reinhardtii
-
Lin, H., Miller, M.L., Granas, D.M., and Dutcher, S.K. (2013). Whole genome sequencing identifies a deletion in protein phosphatase 2A that affects its stability and localization in Chlamydomonas reinhardtii. PLoS Genet. 9: e1003841.
-
(2013)
Plos Genet
, vol.9
-
-
Lin, H.1
Miller, M.L.2
Granas, D.M.3
Dutcher, S.K.4
-
49
-
-
84979859126
-
Experimental evolution reveals hidden diversity in evolutionary pathways
-
Lind, P.A., Farr, A.D., and Rainey, P.B. (2015). Experimental evolution reveals hidden diversity in evolutionary pathways. eLife 4: e07074.
-
(2015)
Elife
, vol.4
-
-
Lind, P.A.1
Farr, A.D.2
Rainey, P.B.3
-
50
-
-
0030902911
-
Intron sequences provide a tool for high-resolution phylogenetic analysis of volvocine algae
-
Liss, M., Kirk, D.L., Beyser, K., and Fabry, S. (1997). Intron sequences provide a tool for high-resolution phylogenetic analysis of volvocine algae. Curr. Genet. 31: 214-227.
-
(1997)
Curr. Genet
, vol.31
, pp. 214-227
-
-
Liss, M.1
Kirk, D.L.2
Beyser, K.3
Fabry, S.4
-
51
-
-
84863116742
-
A systematic survey of loss-of-function variants in human protein-coding genes
-
MacArthur, D.G., et al. (2012). A systematic survey of loss-of-function variants in human protein-coding genes. Science 335: 823-828.
-
(2012)
Science
, vol.335
, pp. 823-828
-
-
Macarthur, D.G.1
-
52
-
-
84893361639
-
Whole-genome sequencing reveals untapped genetic potential in Africa’s indigenous cereal crop sorghum
-
Mace, E.S., et al. (2013). Whole-genome sequencing reveals untapped genetic potential in Africa’s indigenous cereal crop sorghum. Nat. Commun. 4: 2320.
-
(2013)
Nat. Commun
, vol.4
-
-
Mace, E.S.1
-
53
-
-
84875993590
-
Plant nucleotide binding site-leucine-rich repeat (NBS-LRR) genes: Active guardians in host defense responses
-
Marone, D., Russo, M., Laidò, G., De Leonardis, A., and Mastrangelo, A. (2013). Plant nucleotide binding site-leucine-rich repeat (NBS-LRR) genes: Active guardians in host defense responses. Int. J. Mol. Sci. 14: 7302-7326.
-
(2013)
Int. J. Mol. Sci
, vol.14
, pp. 7302-7326
-
-
Marone, D.1
Russo, M.2
Laidò, G.3
De Leonardis, A.4
Mastrangelo, A.5
-
54
-
-
84894062713
-
Structural variation and genome complexity: Is dispensable really dispensable
-
Marroni, F., Pinosio, S., and Morgante, M. (2014). Structural variation and genome complexity: is dispensable really dispensable? Curr. Opin. Plant Biol. 18: 31-36.
-
(2014)
Curr. Opin. Plant Biol
, vol.18
, pp. 31-36
-
-
Marroni, F.1
Pinosio, S.2
Morgante, M.3
-
55
-
-
35348896591
-
The Chlamydomonas genome reveals the evolution of key animal and plant functions
-
Merchant, S.S., et al. (2007). The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318: 245-250.
-
(2007)
Science
, vol.318
, pp. 245-250
-
-
Merchant, S.S.1
-
56
-
-
37649023555
-
CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis
-
Miya, A., Albert, P., Shinya, T., Desaki, Y., Ichimura, K., Shirasu, K., Narusaka, Y., Kawakami, N., Kaku, H., and Shibuya, N. (2007). CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis. Proc. Natl. Acad. Sci. USA 104: 19613-19618.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 19613-19618
-
-
Miya, A.1
Albert, P.2
Shinya, T.3
Desaki, Y.4
Ichimura, K.5
Shirasu, K.6
Narusaka, Y.7
Kawakami, N.8
Kaku, H.9
Shibuya, N.10
-
57
-
-
84904054310
-
Hybridization between Japanese and North American Chlamydomonas reinhardtii (Volvocales, Chlorophyceae). Phycol
-
Nakada, T., Tsuchida, Y., and Arakawa, K. (2014). Hybridization between Japanese and North American Chlamydomonas reinhardtii (Volvocales, Chlorophyceae). Phycol. Res. 62: 232-236.
-
(2014)
Res
, vol.62
, pp. 232-236
-
-
Nakada, T.1
Tsuchida, Y.2
Arakawa, K.3
-
59
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei, M., and Gojobori, T. (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3: 418-426.
-
(1986)
Mol. Biol. Evol
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
60
-
-
84870709677
-
Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii
-
Ness, R.W., Morgan, A.D., Colegrave, N., and Keightley, P.D. (2012). Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii. Genetics 192: 1447-1454.
-
(2012)
Genetics
, vol.192
, pp. 1447-1454
-
-
Ness, R.W.1
Morgan, A.D.2
Colegrave, N.3
Keightley, P.D.4
-
61
-
-
62149107922
-
Generation of Chlamydomonas strains that efficiently express nuclear transgenes
-
Neupert, J., Karcher, D., and Bock, R. (2009). Generation of Chlamydomonas strains that efficiently express nuclear transgenes. Plant J. 57: 1140-1150.
-
(2009)
Plant J
, vol.57
, pp. 1140-1150
-
-
Neupert, J.1
Karcher, D.2
Bock, R.3
-
62
-
-
0001075725
-
Algal biodiversity
-
Norton, T.A., Melkonian, M., and Andersen, R.A. (1996). Algal biodiversity. Phycologia 35: 308-326.
-
(1996)
Phycologia
, vol.35
, pp. 308-326
-
-
Norton, T.A.1
Melkonian, M.2
Andersen, R.A.3
-
63
-
-
33845985995
-
Evaluating support for the current classification of eukaryotic diversity
-
Parfrey, L.W., Barbero, E., Lasser, E., Dunthorn, M., Bhattacharya, D., Patterson, D.J., and Katz, L.A. (2006). Evaluating support for the current classification of eukaryotic diversity. PLoS Genet. 2: e220.
-
(2006)
Plos Genet
, vol.2
-
-
Parfrey, L.W.1
Barbero, E.2
Lasser, E.3
Dunthorn, M.4
Bhattacharya, D.5
Patterson, D.J.6
Katz, L.A.7
-
64
-
-
22244458310
-
Proteomic analysis of a eukaryotic cilium
-
Pazour, G.J., Agrin, N., Leszyk, J., and Witman, G.B. (2005). Proteomic analysis of a eukaryotic cilium. J. Cell Biol. 170: 103-113.
-
(2005)
J. Cell Biol
, vol.170
, pp. 103-113
-
-
Pazour, G.J.1
Agrin, N.2
Leszyk, J.3
Witman, G.B.4
-
65
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard, J.K., Stephens, M., and Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
66
-
-
77954606278
-
Genomic analysis of organismal com- plexity in the multicellular green alga Volvox carteri
-
Prochnik, S.E., et al. (2010). Genomic analysis of organismal com- plexity in the multicellular green alga Volvox carteri. Science 329: 223-226.
-
(2010)
Science
, vol.329
, pp. 223-226
-
-
Prochnik, S.E.1
-
67
-
-
25444488729
-
Portrait of a species: Chlamydomonas reinhardtii
-
Pröschold, T., Harris, E.H., and Coleman, A.W. (2005). Portrait of a species: Chlamydomonas reinhardtii. Genetics 170: 1601-1610.
-
(2005)
Genetics
, vol.170
, pp. 1601-1610
-
-
Pröschold, T.1
Harris, E.H.2
Coleman, A.W.3
-
68
-
-
0028080711
-
Isolation of four new strains of Chlamydomonas reinhardtii (Chlorophyta) from soil samples
-
Sack, L., Zeyl, C., Bell, G., Sharbel, T., Reboud, X., Bernhardt, T., and Koelewyn, H. (1994). Isolation of four new strains of Chlamydomonas reinhardtii (chlorophyta) from soil samples. J. Phycol. 30: 770-773.
-
(1994)
J. Phycol
, vol.30
, pp. 770-773
-
-
Sack, L.1
Zeyl, C.2
Bell, G.3
Sharbel, T.4
Reboud, X.5
Bernhardt, T.6
Koelewyn, H.7
-
69
-
-
84921947366
-
Patterns of genomic changes with crop domestication and breeding
-
Shi, J., and Lai, J. (2015). Patterns of genomic changes with crop domestication and breeding. Curr. Opin. Plant Biol. 24: 47-53.
-
(2015)
Curr. Opin. Plant Biol
, vol.24
, pp. 47-53
-
-
Shi, J.1
Lai, J.2
-
70
-
-
78651569539
-
Oil accumulation in the model green alga Chlamydomonas reinhardtii: Characterization, variability between common laboratory strains and relationship with starch reserves
-
Siaut, M., Cuine, S., Cagnon, C., Fessler, B., Nguyen, M., Carrier, P., Beyly, A., Beisson, F., Triantaphylides, C., Li-Beisson, Y., and Peltier, G. (2011). Oil accumulation in the model green alga Chlamydomonas reinhardtii: characterization, variability between common laboratory strains and relationship with starch reserves. BMC Biotechnol. 11: 7.
-
(2011)
BMC Biotechnol
, vol.11
-
-
Siaut, M.1
Cuine, S.2
Cagnon, C.3
Fessler, B.4
Nguyen, M.5
Carrier, P.6
Beyly, A.7
Beisson, F.8
Triantaphylides, C.9
Li-Beisson, Y.10
Peltier, G.11
-
71
-
-
69749083447
-
JBrowse: A next-generation genome browser
-
Skinner, M.E., Uzilov, A.V., Stein, L.D., Mungall, C.J., and Holmes, I.H. (2009). JBrowse: a next-generation genome browser. Genome Res. 19: 1630-1638.
-
(2009)
Genome Res
, vol.19
, pp. 1630-1638
-
-
Skinner, M.E.1
Uzilov, A.V.2
Stein, L.D.3
Mungall, C.J.4
Holmes, I.H.5
-
72
-
-
44849098142
-
Nucleotide diversity in the mitochondrial and nuclear compartments of Chlamydomonas reinhardtii: Investigating the origins of genome architecture
-
Smith, D., and Lee, R. (2008). Nucleotide diversity in the mitochondrial and nuclear compartments of Chlamydomonas reinhardtii: investigating the origins of genome architecture. BMC Evol. Biol. 8: 156.
-
(2008)
BMC Evol. Biol
, vol.8
-
-
Smith, D.1
Lee, R.2
-
73
-
-
84989629188
-
Isolation and preliminary characterisation of three Chlamydomonas strains interfertile with Chlamydomonas reinhardtii (Chlorophyta)
-
Spanier, J.G., Graham, J.E., and Jarvik, J.W. (1992). Isolation and preliminary characterisation of three Chlamydomonas strains interfertile with Chlamydomonas reinhardtii (Chlorophyta). J. Phycol. 28: 822-828.
-
(1992)
J. Phycol
, vol.28
, pp. 822-828
-
-
Spanier, J.G.1
Graham, J.E.2
Jarvik, J.W.3
-
74
-
-
3242889577
-
AUGUSTUS: A web server for gene finding in eukaryotes
-
Stanke, M., Steinkamp, R., Waack, S., and Morgenstern, B. (2004). AUGUSTUS: a web server for gene finding in eukaryotes. Nucleic Acids Res. 32: 309-312.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 309-312
-
-
Stanke, M.1
Steinkamp, R.2
Waack, S.3
Morgenstern, B.4
-
75
-
-
84868599895
-
Drift-barrier hypothesis and mutation-rate evolution
-
Sung, W., Ackerman, M.S., Miller, S.F., Doak, T.G., and Lynch, M. (2012). Drift-barrier hypothesis and mutation-rate evolution. Proc. Natl. Acad. Sci. USA 109: 18488-18492.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 18488-18492
-
-
Sung, W.1
Ackerman, M.S.2
Miller, S.F.3
Doak, T.G.4
Lynch, M.5
-
76
-
-
84866764744
-
Genomics of volvocine algae
-
P. Gwenaël(New York: Academic Press
-
Umen, J.G. and Olson, B.J.S.C. (2012). Genomics of volvocine algae. In Advances in Botanical Research, P. Gwenaël, ed (New York: Academic Press), pp. 185-243.
-
(2012)
Advances in Botanical Research
, pp. 185-243
-
-
Umen, J.G.1
Olson, B.J.S.C.2
-
77
-
-
0034783490
-
Development and characterization of genome-wide single nucleotide polymorphism markers in the green alga Chlamydomonas reinhardtii
-
Vysotskaia, V.S., Curtis, D.E., Voinov, A.V., Kathir, P., Silflow, C.D., and Lefebvre, P.A. (2001). Development and characterization of genome-wide single nucleotide polymorphism markers in the green alga Chlamydomonas reinhardtii. Plant Physiol. 127: 386-389.
-
(2001)
Plant Physiol
, vol.127
, pp. 386-389
-
-
Vysotskaia, V.S.1
Curtis, D.E.2
Voinov, A.V.3
Kathir, P.4
Silflow, C.D.5
Lefebvre, P.A.6
-
78
-
-
84922395367
-
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication
-
Wang, M., et al. (2014). The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nat. Genet. 46: 982-988.
-
(2014)
Nat. Genet
, vol.46
, pp. 982-988
-
-
Wang, M.1
-
79
-
-
33747035582
-
Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
-
Xu, K., Xu, X., Fukao, T., Canlas, P., Maghirang-Rodriguez, R., Heuer, S., Ismail, A.M., Bailey-Serres, J., Ronald, P.C., and Mackill, D.J. (2006). Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 442: 705-708.
-
(2006)
Nature
, vol.442
, pp. 705-708
-
-
Xu, K.1
Xu, X.2
Fukao, T.3
Canlas, P.4
Maghirang-Rodriguez, R.5
Heuer, S.6
Ismail, A.M.7
Bailey-Serres, J.8
Ronald, P.C.9
Mackill, D.J.10
-
80
-
-
84862936211
-
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nat
-
Xu, X., et al. (2012). Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nat. Biotechnol. 30: 105-111.
-
(2012)
Biotechnol
, vol.30
, pp. 105-111
-
-
Xu, X.1
-
81
-
-
77955044283
-
SVDetect: A tool to identify genomic structural variations from paired-end and mate-pair sequencing data
-
Zeitouni, B., Boeva, V., Janoueix-Lerosey, I., Loeillet, S., Legoix-né, P., Nicolas, A., Delattre, O., and Barillot, E. (2010). SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data. Bioinformatics 26: 1895-1896.
-
(2010)
Bioinformatics
, vol.26
, pp. 1895-1896
-
-
Zeitouni, B.1
Boeva, V.2
Janoueix-Lerosey, I.3
Loeillet, S.4
Legoix-Né, P.5
Nicolas, A.6
Delattre, O.7
Barillot, E.8
-
82
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D.R., and Birney, E. (2008). Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18: 821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
83
-
-
78651337578
-
PlantTFDB 2.0: Update and improvement of the comprehensive plant transcription factor database
-
Zhang, H., Jin, J., Tang, L., Zhao, Y., Gu, X., Gao, G., and Luo, J. (2011). PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. Nucleic Acids Res. 39: 1114-1117.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1114-1117
-
-
Zhang, H.1
Jin, J.2
Tang, L.3
Zhao, Y.4
Gu, X.5
Gao, G.6
Luo, J.7
-
84
-
-
84901447887
-
High-throughput genotyping of green algal mutants reveals random distribution of mutagenic insertion sites and endonucleolytic cleavage of transforming DNA
-
Zhang, R., Patena, W., Armbruster, U., Gang, S.S., Blum, S.R., and Jonikas, M.C. (2014). High-throughput genotyping of green algal mutants reveals random distribution of mutagenic insertion sites and endonucleolytic cleavage of transforming DNA. Plant Cell 26: 1398-1409.
-
(2014)
Plant Cell
, vol.26
, pp. 1398-1409
-
-
Zhang, R.1
Patena, W.2
Armbruster, U.3
Gang, S.S.4
Blum, S.R.5
Jonikas, M.C.6
|