-
1
-
-
84877071826
-
Tiered regulation of sulfur deprivation responses in Chlamydomonas reinhardtii and identification of an associated regulatory factor
-
Aksoy, M., Pootakham, W., Pollock, S. V., Moseley, J. L., González-Ballester, D., and Grossman, A. R. (2013). Tiered regulation of sulfur deprivation responses in Chlamydomonas reinhardtii and identification of an associated regulatory factor. Plant Physiol. 162, 195-211. doi: 10.1104/pp.113.214593
-
(2013)
Plant Physiol
, vol.162
, pp. 195-211
-
-
Aksoy, M.1
Pootakham, W.2
Pollock, S.V.3
Moseley, J.L.4
González-Ballester, D.5
Grossman, A.R.6
-
2
-
-
9144232912
-
UniProt: the universal protein knowledgebase
-
Apweiler, R., Bairoch, A., Wu, C. H., Barker, W. C., Boeckmann, B., Ferro, S., et al. (2004). UniProt: the universal protein knowledgebase. Nucleic Acids Res. 32, D115-D119. doi:10.1093/nar/gkh131
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D115-D119
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
-
3
-
-
0023258583
-
Tetrathionate reduction and production of hydrogen sulfide from thiosulfate
-
Barrett, E. L., and Clark, M. A. (1987). Tetrathionate reduction and production of hydrogen sulfide from thiosulfate. Microbiol. Rev. 51, 192.
-
(1987)
Microbiol. Rev
, vol.51
, pp. 192
-
-
Barrett, E.L.1
Clark, M.A.2
-
4
-
-
84890893309
-
Comparative metabolic systems analysis of pathogenic Burkholderia
-
Bartell, J. A., Yen, P., Varga, J. J., Goldberg, J. B., and Papin, J. A. (2014). Comparative metabolic systems analysis of pathogenic Burkholderia. J. Bacteriol. 196, 210-226. doi:10.1128/JB.00997-13
-
(2014)
J. Bacteriol
, vol.196
, pp. 210-226
-
-
Bartell, J.A.1
Yen, P.2
Varga, J.J.3
Goldberg, J.B.4
Papin, J.A.5
-
5
-
-
49449084183
-
-
Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
-
Barton, N. H., Briggs, D. E. G., Eisen, J. A., Goldstein, D. B., and Patel, N. H. (2007). Evolution. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
-
(2007)
Evolution
-
-
Barton, N.H.1
Briggs, D.E.G.2
Eisen, J.A.3
Goldstein, D.B.4
Patel, N.H.5
-
6
-
-
34347258175
-
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
-
Becker, S. A., Feist, A. M., Mo, M. L., Hannum, G., Palsson, B. Ø, and Herrgard, M. J. (2007). Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nat. Protoc. 2, 727-738. doi:10.1038/nprot.2007.99
-
(2007)
Nat. Protoc
, vol.2
, pp. 727-738
-
-
Becker, S.A.1
Feist, A.M.2
Mo, M.L.3
Hannum, G.4
Palsson, B.Ø.5
Herrgard, M.J.6
-
7
-
-
84891519072
-
Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant
-
Blaby, I. K., Glaesener, A. G., Mettler, T., Fitz-Gibbon, S. T., Gallaher, S. D., Liu, B., et al. (2013). Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant. Plant Cell 25, 4305-4323. doi:10.1105/tpc.113.117580
-
(2013)
Plant Cell
, vol.25
, pp. 4305-4323
-
-
Blaby, I.K.1
Glaesener, A.G.2
Mettler, T.3
Fitz-Gibbon, S.T.4
Gallaher, S.D.5
Liu, B.6
-
8
-
-
0037379691
-
New technologies to assess genotype-phenotype relationships
-
Bochner, B. R. (2003). New technologies to assess genotype-phenotype relationships. Nat. Rev. Genet. 4, 309-314. doi:10.1038/nrg1046
-
(2003)
Nat. Rev. Genet
, vol.4
, pp. 309-314
-
-
Bochner, B.R.1
-
9
-
-
57649123534
-
Global phenotypic characterization of bacteria
-
Bochner, B. R. (2009). Global phenotypic characterization of bacteria. FEMS Microbiol. Rev. 33, 191-205. doi:10.1111/j.1574-6976.2008.00149.x
-
(2009)
FEMS Microbiol. Rev
, vol.33
, pp. 191-205
-
-
Bochner, B.R.1
-
10
-
-
0034911878
-
Phenotype microarrays for high-throughput phenotypic testing and assay of gene function
-
Bochner, B. R., Gadzinski, P., and Panomitros, E. (2001). Phenotype microarrays for high-throughput phenotypic testing and assay of gene function. Genome Res. 11, 1246-1255. doi:10.1101/gr.186501
-
(2001)
Genome Res
, vol.11
, pp. 1246-1255
-
-
Bochner, B.R.1
Gadzinski, P.2
Panomitros, E.3
-
11
-
-
33645000533
-
Metabolite profiling of Chlamydomonas reinhardtii under nutrient deprivation
-
Bölling, C., and Fiehn, O. (2005). Metabolite profiling of Chlamydomonas reinhardtii under nutrient deprivation. Plant Physiol. 139, 1995-2005. doi:10.1104/pp.105.071589
-
(2005)
Plant Physiol
, vol.139
, pp. 1995-2005
-
-
Bölling, C.1
Fiehn, O.2
-
12
-
-
80051537012
-
Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism
-
Chang, R. L., Ghamsari, L., Manichaikul, A., Hom, E. F., Balaji, S., Fu, W., et al. (2011). Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism. Mol. Syst. Biol. 7, 518. doi:10.1038/msb.2011.52
-
(2011)
Mol. Syst. Biol
, vol.7
, pp. 518
-
-
Chang, R.L.1
Ghamsari, L.2
Manichaikul, A.3
Hom, E.F.4
Balaji, S.5
Fu, W.6
-
13
-
-
84866333915
-
Acidithiobacillus caldus sulfur oxidation model based on transcriptome analysis between the wild type and sulfur oxygenase reductase defective mutant
-
Chen, L., Ren, Y., Lin, J., Liu, X., Pang, X., and Lin, J. (2012). Acidithiobacillus caldus sulfur oxidation model based on transcriptome analysis between the wild type and sulfur oxygenase reductase defective mutant. PLoS ONE 7:e39470. doi:10.1371/journal.pone.0039470
-
(2012)
PLoS ONE
, vol.7
-
-
Chen, L.1
Ren, Y.2
Lin, J.3
Liu, X.4
Pang, X.5
Lin, J.6
-
14
-
-
84891783174
-
Activities at the universal protein resource (UniProt)
-
Consortium, T. U. (2014). Activities at the universal protein resource (UniProt). Nucleic Acids Res. 42, D191-D198. doi:10.1093/nar/gkt1140
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D191-D198
-
-
Consortium, T.U.1
-
15
-
-
84887992878
-
How metabolomics can contribute to bio-processes: a proof of concept study for biomarkers discovery in the context of nitrogen-starved microalgae grown in photobioreactors
-
Courant, F., Martzolff, A., Rabin, G., Antignac, J.-P., Le Bizec, B., Giraudeau, P., et al. (2013). How metabolomics can contribute to bio-processes: a proof of concept study for biomarkers discovery in the context of nitrogen-starved microalgae grown in photobioreactors. Metabolomics 9, 1286-1300. doi:10.1007/s11306-013-0532-y
-
(2013)
Metabolomics
, vol.9
, pp. 1286-1300
-
-
Courant, F.1
Martzolff, A.2
Rabin, G.3
Antignac, J.-P.4
Le Bizec, B.5
Giraudeau, P.6
-
16
-
-
33747374091
-
Algae need their vitamins
-
Croft, M. T., Warren, M. J., and Smith, A. G. (2006). Algae need their vitamins. Eukaryot. Cell 5, 1175-1183. doi:10.1128/EC.00097-06
-
(2006)
Eukaryot. Cell
, vol.5
, pp. 1175-1183
-
-
Croft, M.T.1
Warren, M.J.2
Smith, A.G.3
-
17
-
-
84255195408
-
AlgaGEM-a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome
-
Dal'Molin, C. G., Quek, L.-E., Palfreyman, R., and Nielsen, L. (2011). AlgaGEM-a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome. BMC Genomics 12:S5. doi:10.1186/1471-2164-12-S4-S5
-
(2011)
BMC Genomics
, vol.12
-
-
Dal'Molin, C.G.1
Quek, L.-E.2
Palfreyman, R.3
Nielsen, L.4
-
18
-
-
19044380672
-
Functional genomics of eukaryotic photosynthesis using insertional mutagenesis of Chlamydomonas reinhardtii
-
Dent, R. M., Haglund, C. M., Chin, B. L., Kobayashi, M. C., and Niyogi, K. K. (2005). Functional genomics of eukaryotic photosynthesis using insertional mutagenesis of Chlamydomonas reinhardtii. Plant Physiol. 137, 545-556. doi:10.1104/pp.104.055244
-
(2005)
Plant Physiol
, vol.137
, pp. 545-556
-
-
Dent, R.M.1
Haglund, C.M.2
Chin, B.L.3
Kobayashi, M.C.4
Niyogi, K.K.5
-
19
-
-
84893875003
-
Asparagine assimilation is critical for intracellular replication and dissemination of Francisella
-
Gesbert, G., Ramond, E., Rigard, M., Frapy, E., Dupuis, M., Dubail, I., et al. (2014). Asparagine assimilation is critical for intracellular replication and dissemination of Francisella. Cell. Microbiol. 16, 434-449. doi:10.1111/cmi.12227
-
(2014)
Cell. Microbiol
, vol.16
, pp. 434-449
-
-
Gesbert, G.1
Ramond, E.2
Rigard, M.3
Frapy, E.4
Dupuis, M.5
Dubail, I.6
-
20
-
-
79958821230
-
Genome-wide functional annotation and structural verification of metabolic ORFeome of Chlamydomonas reinhardtii
-
Ghamsari, L., Balaji, S., Shen, Y., Yang, X., Balcha, D., Fan, C., et al. (2011). Genome-wide functional annotation and structural verification of metabolic ORFeome of Chlamydomonas reinhardtii. BMC Genomics 12:S4. doi:10.1186/1471-2164-12-S1-S4
-
(2011)
BMC Genomics
, vol.12
-
-
Ghamsari, L.1
Balaji, S.2
Shen, Y.3
Yang, X.4
Balcha, D.5
Fan, C.6
-
21
-
-
84856585935
-
Phytozome: a comparative platform for green plant genomics
-
Goodstein, D. M., Shu, S., Howson, R., Neupane, R., Hayes, R. D., Fazo, J., et al. (2012). Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 40, D1178-D1186. doi:10.1093/nar/gkr944
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D1178-D1186
-
-
Goodstein, D.M.1
Shu, S.2
Howson, R.3
Neupane, R.4
Hayes, R.D.5
Fazo, J.6
-
22
-
-
0013832925
-
Cytochrome f and plastocyanin: their sequence in the photosynthetic electron transport chain of Chlamydomonas reinhardi
-
Gorman, D. S., and Levine, R. P. (1965). Cytochrome f and plastocyanin: their sequence in the photosynthetic electron transport chain of Chlamydomonas reinhardi. Proc. Natl. Acad. Sci. U.S.A. 54, 1665-1669. doi:10.1073/pnas.54.6.1665
-
(1965)
Proc. Natl. Acad. Sci. U.S.A
, vol.54
, pp. 1665-1669
-
-
Gorman, D.S.1
Levine, R.P.2
-
23
-
-
84899965970
-
Phenotype microarray technology and its application in industrial biotechnology
-
Greetham, D. (2014). Phenotype microarray technology and its application in industrial biotechnology. Biotechnol. Lett. 36, 1153-1160. doi:10.1007/s10529-014-1481-x
-
(2014)
Biotechnol. Lett
, vol.36
, pp. 1153-1160
-
-
Greetham, D.1
-
25
-
-
80053209396
-
Insights into the evolution of vitamin B12 auxotrophy from sequenced algal genomes
-
Helliwell, K. E., Wheeler, G. L., Leptos, K. C., Goldstein, R. E., and Smith, A. G. (2011). Insights into the evolution of vitamin B12 auxotrophy from sequenced algal genomes. Mol. Biol. Evol. 28, 2921-2933. doi:10.1093/molbev/msr124
-
(2011)
Mol. Biol. Evol
, vol.28
, pp. 2921-2933
-
-
Helliwell, K.E.1
Wheeler, G.L.2
Leptos, K.C.3
Goldstein, R.E.4
Smith, A.G.5
-
26
-
-
84920081702
-
'Genetic and bioinformatic insights into iron and sulfur oxidation mechanisms of bioleaching organisms,'
-
eds D. E. Rawlings and D. B. Johnson (Berlin: Springer)
-
Holmes, D. S., and Bonnefoy, V. (2007). "Genetic and bioinformatic insights into iron and sulfur oxidation mechanisms of bioleaching organisms," in Biomining, eds D. E. Rawlings and D. B. Johnson (Berlin: Springer), 281-307.
-
(2007)
Biomining
, pp. 281-307
-
-
Holmes, D.S.1
Bonnefoy, V.2
-
27
-
-
34547560275
-
WoLF PSORT: protein localization predictor
-
Horton, P., Park, K.-J., Obayashi, T., Fujita, N., Harada, H., Adams-Collier, C. J., et al. (2007). WoLF PSORT: protein localization predictor. Nucleic Acids Res. 35, W585-W587. doi:10.1093/nar/gkm259
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W585-W587
-
-
Horton, P.1
Park, K.-J.2
Obayashi, T.3
Fujita, N.4
Harada, H.5
Adams-Collier, C.J.6
-
28
-
-
84891760956
-
Data, information, knowledge and principle: back to metabolism in KEGG
-
Kanehisa, M., Goto, S., Sato, Y., Kawashima, M., Furumichi, M., and Tanabe, M. (2014). Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res. 42, D199-D205. doi:10.1093/nar/gkt1076
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D199-D205
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Kawashima, M.4
Furumichi, M.5
Tanabe, M.6
-
29
-
-
0000991236
-
Carrier-mediated uptake of arginine and urea by Chlamydomonas reinhardtii
-
Kirk, D. L., and Kirk, M. M. (1978). Carrier-mediated uptake of arginine and urea by Chlamydomonas reinhardtii. Plant Physiol. 61, 556-560. doi:10.1104/pp.61.4.549
-
(1978)
Plant Physiol
, vol.61
, pp. 556-560
-
-
Kirk, D.L.1
Kirk, M.M.2
-
30
-
-
84881515127
-
Computational models of algae metabolism for industrial applications
-
Koskimaki, J. E., Blazier, A. S., Clarens, A. F., and Papin, J. A. (2013). Computational models of algae metabolism for industrial applications. Ind. Biotechnol. 9, 185-195. doi:10.1089/ind.2013.0012
-
(2013)
Ind. Biotechnol
, vol.9
, pp. 185-195
-
-
Koskimaki, J.E.1
Blazier, A.S.2
Clarens, A.F.3
Papin, J.A.4
-
31
-
-
84912544153
-
Computational approaches for microalgal biofuel optimization: a review
-
Koussa, J., Chaiboonchoe, A., and Salehi-Ashtiani, K. (2014). Computational approaches for microalgal biofuel optimization: a review. Biomed Res. Int. 2014, 649453. doi:10.1155/2014/649453
-
(2014)
Biomed Res. Int
, vol.2014
-
-
Koussa, J.1
Chaiboonchoe, A.2
Salehi-Ashtiani, K.3
-
32
-
-
84866172198
-
Archaeal tetrathionate hydrolase goes viral: secretion of a sulfur metabolism enzyme in the form of virus-like particles
-
Krupovic, M., Peixeiro, N., Bettstetter, M., Rachel, R., and Prangishvili, D. (2012). Archaeal tetrathionate hydrolase goes viral: secretion of a sulfur metabolism enzyme in the form of virus-like particles. Appl. Environ. Microbiol. 78, 5463-5465. doi:10.1128/AEM.01186-12
-
(2012)
Appl. Environ. Microbiol
, vol.78
, pp. 5463-5465
-
-
Krupovic, M.1
Peixeiro, N.2
Bettstetter, M.3
Rachel, R.4
Prangishvili, D.5
-
33
-
-
68349108021
-
Metabolic network analysis integrated with transcript verification for sequenced genomes
-
Manichaikul, A., Ghamsari, L., Hom, E. F. Y., Lin, C., Murray, R. R., Chang, R. L., et al. (2009). Metabolic network analysis integrated with transcript verification for sequenced genomes. Nat. Methods 6, 589-592. doi:10.1038/nmeth.1348
-
(2009)
Nat. Methods
, vol.6
, pp. 589-592
-
-
Manichaikul, A.1
Ghamsari, L.2
Hom, E.F.Y.3
Lin, C.4
Murray, R.R.5
Chang, R.L.6
-
35
-
-
66349086716
-
ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii
-
May, P., Christian, J.-O., Kempa, S., and Walther, D. (2009). ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii. BMC Genomics 10:209. doi:10.1186/1471-2164-10-209
-
(2009)
BMC Genomics
, vol.10
, pp. 209
-
-
May, P.1
Christian, J.-O.2
Kempa, S.3
Walther, D.4
-
36
-
-
35348896591
-
The Chlamydomonas genome reveals the evolution of key animal and plant functions
-
Merchant, S. S., Prochnik, S. E., Vallon, O., Harris, E. H., Karpowicz, S. J., Witman, G. B., et al. (2007). The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318, 245-250. doi:10.1126/science.1143609
-
(2007)
Science
, vol.318
, pp. 245-250
-
-
Merchant, S.S.1
Prochnik, S.E.2
Vallon, O.3
Harris, E.H.4
Karpowicz, S.J.5
Witman, G.B.6
-
37
-
-
84904975689
-
Systems analysis of the response of photosynthesis, metabolism, and growth to an increase in irradiance in the photosynthetic model organism Chlamydomonas reinhardtii
-
Mettler, T., Mühlhaus, T., Hemme, D., Schöttler, M.-A., Rupprecht, J., Idoine, A., et al. (2014). Systems analysis of the response of photosynthesis, metabolism, and growth to an increase in irradiance in the photosynthetic model organism Chlamydomonas reinhardtii. Plant Cell 26, 2310-2350. doi:10.1105/tpc.114.124537
-
(2014)
Plant Cell
, vol.26
, pp. 2310-2350
-
-
Mettler, T.1
Mühlhaus, T.2
Hemme, D.3
Schöttler, M.-A.4
Rupprecht, J.5
Idoine, A.6
-
39
-
-
70449529534
-
Comparison of the Biolog OmniLog Identification System and 16S ribosomal RNA gene sequencing for accuracy in identification of atypical bacteria of clinical origin
-
Morgan, M. C., Boyette, M., Goforth, C., Sperry, K. V., and Greene, S. R. (2009). Comparison of the Biolog OmniLog Identification System and 16S ribosomal RNA gene sequencing for accuracy in identification of atypical bacteria of clinical origin. J. Microbiol. Methods 79, 336-343. doi:10.1016/j.mimet.2009.10.005
-
(2009)
J. Microbiol. Methods
, vol.79
, pp. 336-343
-
-
Morgan, M.C.1
Boyette, M.2
Goforth, C.3
Sperry, K.V.4
Greene, S.R.5
-
40
-
-
0242641519
-
Extracellular deamination of L-amino acids by Chlamydomonas reinhardtii cells
-
Munoz-Blanco, J., Hidalgo-Martinez, J., and Cardenas, J. (1990). Extracellular deamination of L-amino acids by Chlamydomonas reinhardtii cells. Planta 182, 194-198. doi:10.1007/BF00197110
-
(1990)
Planta
, vol.182
, pp. 194-198
-
-
Munoz-Blanco, J.1
Hidalgo-Martinez, J.2
Cardenas, J.3
-
41
-
-
73149122136
-
Applications of genome-scale metabolic reconstructions
-
Oberhardt, M. A., Palsson, B. Ø., and Papin, J. A. (2009). Applications of genome-scale metabolic reconstructions. Mol. Syst. Biol. 5, 320. doi:10.1038/msb.2009.77
-
(2009)
Mol. Syst. Biol
, vol.5
, pp. 320
-
-
Oberhardt, M.A.1
Palsson, B.Ø.2
Papin, J.A.3
-
42
-
-
77749320898
-
What is flux balance analysis?
-
Orth, J. D., Thiele, I., and Palsson, B. O. (2010). What is flux balance analysis? Nat. Biotechnol. 28, 245-248. doi:10.1038/nbt.1614
-
(2010)
Nat. Biotechnol
, vol.28
, pp. 245-248
-
-
Orth, J.D.1
Thiele, I.2
Palsson, B.O.3
-
43
-
-
65649125630
-
Role of a serine-type D-alanyl-D-alanine carboxypeptidase on the survival of Ochrobactrum sp. 11a under ionic and hyperosmotic stress
-
Príncipe, A., Jofré, E., Alvarez, F., and Mori, G. (2009). Role of a serine-type D-alanyl-D-alanine carboxypeptidase on the survival of Ochrobactrum sp. 11a under ionic and hyperosmotic stress. FEMS Microbiol. Lett. 295, 261-273. doi:10.1111/j.1574-6968.2009.01604.x
-
(2009)
FEMS Microbiol. Lett
, vol.295
, pp. 261-273
-
-
Príncipe, A.1
Jofré, E.2
Alvarez, F.3
Mori, G.4
-
44
-
-
78649843153
-
'Systematics of the green algae: conflict of classic and modern approaches,'
-
eds J. Brodie and J. M. Lewis (Boca Raton, FL: CRC Press)
-
Pröschold, T., and Leliaert, F. (2007). "Systematics of the green algae: conflict of classic and modern approaches," in Unravelling the Algae: The Past, Present, and Future of Algal Systematics, eds J. Brodie and J. M. Lewis (Boca Raton, FL: CRC Press), 123-153.
-
(2007)
Unravelling the Algae: The Past, Present, and Future of Algal Systematics
, pp. 123-153
-
-
Pröschold, T.1
Leliaert, F.2
-
45
-
-
1642480180
-
Bioleaching review part A
-
Rohwerder, T., Gehrke, T., Kinzler, K., and Sand, W. (2003). Bioleaching review part A. Appl. Microbiol. Biotechnol. 63, 239-248. doi:10.1007/s00253-003-1448-7
-
(2003)
Appl. Microbiol. Biotechnol
, vol.63
, pp. 239-248
-
-
Rohwerder, T.1
Gehrke, T.2
Kinzler, K.3
Sand, W.4
-
46
-
-
0029658689
-
Cobalamin (coenzyme B12): synthesis and biological significance
-
Roth, J., Lawrence, J., and Bobik, T. (1996). Cobalamin (coenzyme B12): synthesis and biological significance. Annu. Rev. Microbiol. 50, 137-181. doi:10.1146/annurev.micro.50.1.137
-
(1996)
Annu. Rev. Microbiol
, vol.50
, pp. 137-181
-
-
Roth, J.1
Lawrence, J.2
Bobik, T.3
-
47
-
-
79551662521
-
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0
-
Schellenberger, J., Que, R., Fleming, R. M., Thiele, I., Orth, J. D., Feist, A. M., et al. (2011). Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0. Nat. Protoc. 6, 1290-1307. doi:10.1038/nprot.2011.308
-
(2011)
Nat. Protoc
, vol.6
, pp. 1290-1307
-
-
Schellenberger, J.1
Que, R.2
Fleming, R.M.3
Thiele, I.4
Orth, J.D.5
Feist, A.M.6
-
48
-
-
77954699812
-
Metabolic systems analysis to advance algal biotechnology
-
Schmidt, B. J., Lin-Schmidt, X., Chamberlin, A., Salehi-Ashtiani, K., and Papin, J. A. (2010). Metabolic systems analysis to advance algal biotechnology. Biotechnol. J. 5, 660-670. doi:10.1002/biot.201000129
-
(2010)
Biotechnol. J
, vol.5
, pp. 660-670
-
-
Schmidt, B.J.1
Lin-Schmidt, X.2
Chamberlin, A.3
Salehi-Ashtiani, K.4
Papin, J.A.5
-
49
-
-
84858744444
-
Characterization and differential expression of microRNAs elicited by sulfur deprivation in Chlamydomonas reinhardtii
-
Shu, L., and Hu, Z. (2012). Characterization and differential expression of microRNAs elicited by sulfur deprivation in Chlamydomonas reinhardtii. BMC Genomics 13:108. doi:10.1186/1471-2164-13-108
-
(2012)
BMC Genomics
, vol.13
, pp. 108
-
-
Shu, L.1
Hu, Z.2
-
50
-
-
84871324922
-
D-amino acid-induced expression of D-amino acid oxidase in the yeast Schizosaccharomyces pombe
-
Takahashi, S., Okada, H., Abe, K., and Kera, Y. (2012). D-amino acid-induced expression of D-amino acid oxidase in the yeast Schizosaccharomyces pombe. Curr. Microbiol. 65, 764-769. doi:10.1007/s00284-012-0227-z
-
(2012)
Curr. Microbiol
, vol.65
, pp. 764-769
-
-
Takahashi, S.1
Okada, H.2
Abe, K.3
Kera, Y.4
-
51
-
-
84987999317
-
Bacterial species identification getting easier
-
Tshikhudo, P., Nnzeru, R., and Mudau, F. (2013). Bacterial species identification getting easier. Afr. J. Biotechnol. 12, 5975-5982. doi:10.5897/AJB2013.12057
-
(2013)
Afr. J. Biotechnol
, vol.12
, pp. 5975-5982
-
-
Tshikhudo, P.1
Nnzeru, R.2
Mudau, F.3
-
52
-
-
84880221612
-
opm: an R package for analysing OmniLog® phenotype microarray data
-
Vaas, L. A. I., Sikorski, J., Hofner, B., Fiebig, A., Buddruhs, N., Klenk, H.-P., et al. (2013). opm: an R package for analysing OmniLog® phenotype microarray data. Bioinformatics 29, 1823-1824. doi:10.1093/bioinformatics/btt291
-
(2013)
Bioinformatics
, vol.29
, pp. 1823-1824
-
-
Vaas, L.A.I.1
Sikorski, J.2
Hofner, B.3
Fiebig, A.4
Buddruhs, N.5
Klenk, H.-P.6
-
53
-
-
84859982600
-
Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics
-
Vaas, L. A. I., Sikorski, J., Michael, V., Göker, M., and Klenk, H.-P. (2012). Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics. PLoS ONE 7:e34846. doi:10.1371/journal.pone.0034846
-
(2012)
PLoS ONE
, vol.7
-
-
Vaas, L.A.I.1
Sikorski, J.2
Michael, V.3
Göker, M.4
Klenk, H.-P.5
-
54
-
-
0027223982
-
Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates
-
Varma, A., Boesch, B. W., and Palsson, B. O. (1993). Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates. Appl. Environ. Microbiol. 59, 2465-2473.
-
(1993)
Appl. Environ. Microbiol
, vol.59
, pp. 2465-2473
-
-
Varma, A.1
Boesch, B.W.2
Palsson, B.O.3
-
55
-
-
84919788391
-
Rationales and approaches for studying metabolism in eukaryotic microalgae
-
Veyel, D., Erban, A., Fehrle, I., Kopka, J., and Schroda, M. (2014). Rationales and approaches for studying metabolism in eukaryotic microalgae. Metabolites 4, 184-217. doi:10.3390/metabo4020184
-
(2014)
Metabolites
, vol.4
, pp. 184-217
-
-
Veyel, D.1
Erban, A.2
Fehrle, I.3
Kopka, J.4
Schroda, M.5
-
56
-
-
84896768677
-
Integrated quantitative analysis of nitrogen stress response in Chlamydomonas reinhardtii using metabolite and protein profiling
-
Wase, N., Black, P. N., Stanley, B. A., and Dirusso, C. C. (2014). Integrated quantitative analysis of nitrogen stress response in Chlamydomonas reinhardtii using metabolite and protein profiling. J. Proteome Res. 13, 1373-1396. doi:10.1021/pr400952z
-
(2014)
J. Proteome Res
, vol.13
, pp. 1373-1396
-
-
Wase, N.1
Black, P.N.2
Stanley, B.A.3
Dirusso, C.C.4
-
57
-
-
77957157893
-
Gut inflammation provides a respiratory electron acceptor for Salmonella
-
Winter, S. E., Thiennimitr, P., Winter, M. G., Butler, B. P., Huseby, D. L., Crawford, R. W., et al. (2010). Gut inflammation provides a respiratory electron acceptor for Salmonella. Nature 467, 426-429. doi:10.1038/nature09415
-
(2010)
Nature
, vol.467
, pp. 426-429
-
-
Winter, S.E.1
Thiennimitr, P.2
Winter, M.G.3
Butler, B.P.4
Huseby, D.L.5
Crawford, R.W.6
-
58
-
-
0041626148
-
Presence of free D-amino acids in microalgae
-
Yokoyama, T., Kan-No, N., Ogata, T., Kotaki, Y., Sato, M., and Nagahisa, E. (2003). Presence of free D-amino acids in microalgae. Biosci. Biotechnol. Biochem. 67, 388-392. doi:10.1271/bbb.67.388
-
(2003)
Biosci. Biotechnol. Biochem
, vol.67
, pp. 388-392
-
-
Yokoyama, T.1
Kan-No, N.2
Ogata, T.3
Kotaki, Y.4
Sato, M.5
Nagahisa, E.6
-
59
-
-
84865283722
-
Study of amino acids as nitrogen source in Chlamydomonas reinhardtii
-
Zuo, Z., Rong, Q., Chen, K., Yang, L., Chen, Z., Peng, K., et al. (2012). Study of amino acids as nitrogen source in Chlamydomonas reinhardtii. Phycological Res. 60, 161-168. doi:10.1111/j.1440-1835.2012.00646.x
-
(2012)
Phycological Res
, vol.60
, pp. 161-168
-
-
Zuo, Z.1
Rong, Q.2
Chen, K.3
Yang, L.4
Chen, Z.5
Peng, K.6
|