SVDetect: A tool to identify genomic structural variations from paired-end and mate-pair sequencing data

Bioinformatics

Volumn 26, Issue 15, 2010, Pages 1895-1896

  Zeitouni, Bruno ^a,b,c   Boeva, Valentina ^a,b,c,d   Janoueix Lerosey, Isabelle ^a,d   Loeillet, Sophie ^a,e   Legoix né, Patricia ^a   Nicolas, Alain ^a,e   Delattre, Olivier ^a,d   Barillot, Emmanuel ^a,b,c  

^a INSTITUT CURIE   (France)

^b INSERM U900   (France)

^c PSL RESEARCH UNIVERSITY   (France)

^d INSERM   (France)

^e Institut Curie   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; GENETIC VARIABILITY; GENETICS; GENOME; GENOMICS; METHODOLOGY;

GENOME; GENOMIC STRUCTURAL VARIATION; GENOMICS; SOFTWARE;

EID: 77955044283     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq293     Document Type: Article

References (6)

1. Chen,K. et al. (2009) BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat. Methods, 6, 677-681.
2. Futreal,P.A. et al. (2004)Acensus of human cancer genes. Nat. Rev. Cancer, 4, 177-183.
3. Korbel,J.O. et al. (2007) Paired-end mapping reveals extensive structural variation in the human genome. Science, 18, 420-426.
4. Krzywinski,M. et al. (2009) Circos: an information aesthetic for comparative genomics. Genome Res., 19, 1639-1645.
5. Medvedev,P. et al. (2009) Computational methods for discovering structural variation with next-generation sequencing. Nat. Methods, 6 (Suppl. 11), S13-S20.
6. Sindi,S. et al. (2009) A geometric approach for classification and comparison of structural variants. Bioinformatics, 25, 222-230.