-
1
-
-
20444368036
-
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
-
F. Wyers, M. Rougemaille, G. Badis, J.-C. Rousselle, M.-E. Dufour, J. Boulay, and et al. Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase Cell 121 2005 725 737 10.1016/j.cell.2005.04.030
-
(2005)
Cell
, vol.121
, pp. 725-737
-
-
Wyers, F.1
Rougemaille, M.2
Badis, G.3
Rousselle, J.-C.4
Dufour, M.-E.5
Boulay, J.6
-
2
-
-
33645785104
-
A high-resolution map of transcription in the yeast genome
-
L. David, W. Huber, M. Granovskaia, J. Toedling, C.J. Palm, L. Bofkin, and et al. A high-resolution map of transcription in the yeast genome Proc. Natl. Acad. Sci. U. S. A. 103 2006 5320 5325 10.1073/pnas.0601091103
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 5320-5325
-
-
David, L.1
Huber, W.2
Granovskaia, M.3
Toedling, J.4
Palm, C.J.5
Bofkin, L.6
-
3
-
-
33751504083
-
Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase
-
E.J. Steinmetz, C.L. Warren, J.N. Kuehner, B. Panbehi, A.Z. Ansari, and D.A. Brow Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase Mol. Cell 24 2006 735 746 10.1016/j.molcel.2006.10.023
-
(2006)
Mol. Cell
, vol.24
, pp. 735-746
-
-
Steinmetz, E.J.1
Warren, C.L.2
Kuehner, J.N.3
Panbehi, B.4
Ansari, A.Z.5
Brow, D.A.6
-
4
-
-
60549114880
-
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
-
H. Neil, C. Malabat, Y. d' Aubenton-Carafa, Z. Xu, L.M. Steinmetz, and A. Jacquier Widespread bidirectional promoters are the major source of cryptic transcripts in yeast Nature 457 2009 1038 1042 10.1038/nature07747
-
(2009)
Nature
, vol.457
, pp. 1038-1042
-
-
Neil, H.1
Malabat, C.2
D'Aubenton-Carafa, Y.3
Xu, Z.4
Steinmetz, L.M.5
Jacquier, A.6
-
5
-
-
60549108380
-
Bidirectional promoters generate pervasive transcription in yeast
-
Z. Xu, W. Wei, J. Gagneur, F. Perocchi, S. Clauder-Munster, J. Camblong, and et al. Bidirectional promoters generate pervasive transcription in yeast Nature 457 2009 1033 1037
-
(2009)
Nature
, vol.457
, pp. 1033-1037
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
Perocchi, F.4
Clauder-Munster, S.5
Camblong, J.6
-
6
-
-
78751659330
-
Nascent transcript sequencing visualizes transcription at nucleotide resolution
-
L.S. Churchman, and J.S. Weissman Nascent transcript sequencing visualizes transcription at nucleotide resolution Nature 469 2011 368 373 10.1038/nature09652
-
(2011)
Nature
, vol.469
, pp. 368-373
-
-
Churchman, L.S.1
Weissman, J.S.2
-
7
-
-
84869093362
-
Extensive degradation of RNA precursors by the exosome in wild-type cells
-
R.K. Gudipati, Z. Xu, A. Lebreton, B. Séraphin, L.M. Steinmetz, A. Jacquier, and et al. Extensive degradation of RNA precursors by the exosome in wild-type cells Mol. Cell 48 2012 409 421 10.1016/j.molcel.2012.08.018
-
(2012)
Mol. Cell
, vol.48
, pp. 409-421
-
-
Gudipati, R.K.1
Xu, Z.2
Lebreton, A.3
Séraphin, B.4
Steinmetz, L.M.5
Jacquier, A.6
-
8
-
-
79958728225
-
Distinct RNA degradation pathways and 3′ extensions of yeast non-coding RNA species
-
S. Marquardt, D.Z. Hazelbaker, and S. Buratowski Distinct RNA degradation pathways and 3′ extensions of yeast non-coding RNA species Transcription 2 2011 145 154 10.4161/trns.2.3.16298
-
(2011)
Transcription
, vol.2
, pp. 145-154
-
-
Marquardt, S.1
Hazelbaker, D.Z.2
Buratowski, S.3
-
9
-
-
79960065233
-
XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast
-
E.L. van Dijk, C.L. Chen, Y. D'Aubenton-Carafa, S. Gourvennec, M. Kwapisz, V. Roche, and et al. XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast Nature 475 2011 114 117 10.1038/nature10118
-
(2011)
Nature
, vol.475
, pp. 114-117
-
-
Van Dijk, E.L.1
Chen, C.L.2
D'Aubenton-Carafa, Y.3
Gourvennec, S.4
Kwapisz, M.5
Roche, V.6
-
10
-
-
84889591723
-
Transcriptome surveillance by selective termination of noncoding RNA synthesis
-
D. Schulz, B. Schwalb, A. Kiesel, C. Baejen, P. Torkler, J. Gagneur, and et al. Transcriptome surveillance by selective termination of noncoding RNA synthesis Cell 155 2013 1075 1087 10.1016/j.cell.2013.10.024
-
(2013)
Cell
, vol.155
, pp. 1075-1087
-
-
Schulz, D.1
Schwalb, B.2
Kiesel, A.3
Baejen, C.4
Torkler, P.5
Gagneur, J.6
-
11
-
-
79551653371
-
Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6
-
A. Lardenois, Y. Liu, T. Walther, F. Chalmel, B. Evrard, M. Granovskaia, and et al. Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6 Proc. Natl. Acad. Sci. U. S. A. 108 2011 1058 1063 10.1073/pnas.1016459108
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 1058-1063
-
-
Lardenois, A.1
Liu, Y.2
Walther, T.3
Chalmel, F.4
Evrard, B.5
Granovskaia, M.6
-
13
-
-
22744459614
-
A new yeast poly(A) polymerase complex involved in RNA quality control
-
S. Vanacova, J. Wolf, G. Martin, D. Blank, S. Dettwiler, A. Friedlein, and et al. A new yeast poly(A) polymerase complex involved in RNA quality control PLoS Biol. 3 2005 e189 10.1371/journal.pbio.0030189
-
(2005)
PLoS Biol.
, vol.3
, pp. e189
-
-
Vanacova, S.1
Wolf, J.2
Martin, G.3
Blank, D.4
Dettwiler, S.5
Friedlein, A.6
-
14
-
-
20444368818
-
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
-
J. LaCava, J. Houseley, C. Saveanu, E. Petfalski, E. Thompson, A. Jacquier, and et al. RNA degradation by the exosome is promoted by a nuclear polyadenylation complex Cell 121 2005 713 724 10.1016/j.cell.2005.04.029
-
(2005)
Cell
, vol.121
, pp. 713-724
-
-
LaCava, J.1
Houseley, J.2
Saveanu, C.3
Petfalski, E.4
Thompson, E.5
Jacquier, A.6
-
15
-
-
77950509943
-
TRAMP complex enhances RNA degradation by the nuclear exosome component Rrp6
-
K.P. Callahan, and J.S. Butler TRAMP complex enhances RNA degradation by the nuclear exosome component Rrp6 J. Biol. Chem. 285 2010 3540 3547 10.1074/jbc.M109.058396
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 3540-3547
-
-
Callahan, K.P.1
Butler, J.S.2
-
16
-
-
34247628538
-
Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants
-
M. Rougemaille, R.K. Gudipati, J.R. Olesen, R. Thomsen, B. Seraphin, D. Libri, and et al. Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants EMBO J. 26 2007 2317 2326 10.1038/sj.emboj.7601669
-
(2007)
EMBO J.
, vol.26
, pp. 2317-2326
-
-
Rougemaille, M.1
Gudipati, R.K.2
Olesen, J.R.3
Thomsen, R.4
Seraphin, B.5
Libri, D.6
-
18
-
-
84877819839
-
XRN 5′→3′ exoribonucleases: Structure, mechanisms and functions
-
V.K. Nagarajan, C.I. Jones, S.F. Newbury, and P.J. Green XRN 5′→3′ exoribonucleases: structure, mechanisms and functions Biochim. Biophys. Acta 1829 2013 590 603 10.1016/j.bbagrm.2013.03.005
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 590-603
-
-
Nagarajan, V.K.1
Jones, C.I.2
Newbury, S.F.3
Green, P.J.4
-
19
-
-
33744474553
-
Microarray detection of novel nuclear RNA substrates for the exosome
-
R. Houalla, F. Devaux, A. Fatica, J. Kufel, D. Barrass, C. Torchet, and et al. Microarray detection of novel nuclear RNA substrates for the exosome Yeast Chichester Engl. 23 2006 439 454 10.1002/yea.1369
-
(2006)
Yeast Chichester Engl.
, vol.23
, pp. 439-454
-
-
Houalla, R.1
Devaux, F.2
Fatica, A.3
Kufel, J.4
Barrass, D.5
Torchet, C.6
-
20
-
-
0033214175
-
Functions of the exosome in rRNA, snoRNA and snRNA synthesis
-
C. Allmang, J. Kufel, G. Chanfreau, P. Mitchell, E. Petfalski, and D. Tollervey Functions of the exosome in rRNA, snoRNA and snRNA synthesis EMBO J. 18 1999 5399 5410 10.1093/emboj/18.19.5399
-
(1999)
EMBO J.
, vol.18
, pp. 5399-5410
-
-
Allmang, C.1
Kufel, J.2
Chanfreau, G.3
Mitchell, P.4
Petfalski, E.5
Tollervey, D.6
-
21
-
-
0033981301
-
Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs
-
A. van Hoof, P. Lennertz, and R. Parker Yeast exosome mutants accumulate 3′-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs Mol. Cell. Biol. 20 2000 441 452
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 441-452
-
-
Van Hoof, A.1
Lennertz, P.2
Parker, R.3
-
22
-
-
80054759888
-
Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1
-
T.J. Creamer, M.M. Darby, N. Jamonnak, P. Schaughency, H. Hao, S.J. Wheelan, and et al. Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1 PLoS Genet. 7 2011 e1002329 10.1371/journal.pgen.1002329
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002329
-
-
Creamer, T.J.1
Darby, M.M.2
Jamonnak, N.3
Schaughency, P.4
Hao, H.5
Wheelan, S.J.6
-
23
-
-
79955587252
-
The nuclear RNA polymerase II surveillance system targets polymerase III transcripts
-
W. Wlotzka, G. Kudla, S. Granneman, and D. Tollervey The nuclear RNA polymerase II surveillance system targets polymerase III transcripts EMBO J. 30 2011 1790 1803 10.1038/emboj.2011.97
-
(2011)
EMBO J.
, vol.30
, pp. 1790-1803
-
-
Wlotzka, W.1
Kudla, G.2
Granneman, S.3
Tollervey, D.4
-
24
-
-
84878808175
-
The Sm complex is required for the processing of non-coding RNAs by the exosome
-
S. Coy, A. Volanakis, S. Shah, and L. Vasiljeva The Sm complex is required for the processing of non-coding RNAs by the exosome PloS One 8 2013 e65606 10.1371/journal.pone.0065606
-
(2013)
PloS One
, vol.8
, pp. e65606
-
-
Coy, S.1
Volanakis, A.2
Shah, S.3
Vasiljeva, L.4
-
25
-
-
84866392310
-
Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics
-
T. Kim, Z. Xu, S. Clauder-Münster, L.M. Steinmetz, and S. Buratowski Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics Cell 150 2012 1158 1169 10.1016/j.cell.2012.08.016
-
(2012)
Cell
, vol.150
, pp. 1158-1169
-
-
Kim, T.1
Xu, Z.2
Clauder-Münster, S.3
Steinmetz, L.M.4
Buratowski, S.5
-
26
-
-
84866388360
-
Transcription of two long noncoding RNAs mediates mating-type control of gametogenesis in budding yeast
-
F.J. van Werven, G. Neuert, N. Hendrick, A. Lardenois, S. Buratowski, A. van Oudenaarden, and et al. Transcription of two long noncoding RNAs mediates mating-type control of gametogenesis in budding yeast Cell 150 2012 1170 1181 10.1016/j.cell.2012.06.049
-
(2012)
Cell
, vol.150
, pp. 1170-1181
-
-
Van Werven, F.J.1
Neuert, G.2
Hendrick, N.3
Lardenois, A.4
Buratowski, S.5
Van Oudenaarden, A.6
-
27
-
-
84898982878
-
Role of histone modifications and early termination in pervasive transcription and antisense-mediated gene silencing in yeast
-
M. Castelnuovo, J.B. Zaugg, E. Guffanti, A. Maffioletti, J. Camblong, Z. Xu, and et al. Role of histone modifications and early termination in pervasive transcription and antisense-mediated gene silencing in yeast Nucleic Acids Res. 42 2014 4348 4362 10.1093/nar/gku100
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 4348-4362
-
-
Castelnuovo, M.1
Zaugg, J.B.2
Guffanti, E.3
Maffioletti, A.4
Camblong, J.5
Xu, Z.6
-
28
-
-
78650873365
-
Intergenic transcription causes repression by directing nucleosome assembly
-
S.J. Hainer, J.A. Pruneski, R.D. Mitchell, R.M. Monteverde, and J.A. Martens Intergenic transcription causes repression by directing nucleosome assembly Genes Dev. 25 2011 29 40 10.1101/gad.1975011
-
(2011)
Genes Dev.
, vol.25
, pp. 29-40
-
-
Hainer, S.J.1
Pruneski, J.A.2
Mitchell, R.D.3
Monteverde, R.M.4
Martens, J.A.5
-
29
-
-
2942560254
-
Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
-
J.A. Martens, L. Laprade, and F. Winston Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene Nature 429 2004 571 574 10.1038/nature02538
-
(2004)
Nature
, vol.429
, pp. 571-574
-
-
Martens, J.A.1
Laprade, L.2
Winston, F.3
-
30
-
-
79952269552
-
Transcription regulation by the noncoding RNA SRG1 requires Spt2-dependent chromatin deposition in the wake of RNA polymerase II
-
P. Thebault, G. Boutin, W. Bhat, A. Rufiange, J. Martens, and A. Nourani Transcription regulation by the noncoding RNA SRG1 requires Spt2-dependent chromatin deposition in the wake of RNA polymerase II Mol. Cell. Biol. 31 2011 1288 1300 10.1128/MCB.01083-10
-
(2011)
Mol. Cell. Biol.
, vol.31
, pp. 1288-1300
-
-
Thebault, P.1
Boutin, G.2
Bhat, W.3
Rufiange, A.4
Martens, J.5
Nourani, A.6
-
31
-
-
79955475464
-
Unravelling the means to an end: RNA polymerase II transcription termination
-
J.N. Kuehner, E.L. Pearson, and C. Moore Unravelling the means to an end: RNA polymerase II transcription termination Nat. Rev. Mol. Cell Biol. 12 2011 283 294 10.1038/nrm3098
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 283-294
-
-
Kuehner, J.N.1
Pearson, E.L.2
Moore, C.3
-
32
-
-
84872408012
-
Disengaging polymerase: Terminating RNA polymerase II transcription in budding yeast
-
H.E. Mischo, and N.J. Proudfoot Disengaging polymerase: terminating RNA polymerase II transcription in budding yeast Biochim. Biophys. Acta 1829 2013 174 185 10.1016/j.bbagrm.2012.10.003
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 174-185
-
-
Mischo, H.E.1
Proudfoot, N.J.2
-
33
-
-
84888991588
-
The RNA polymerase II carboxy-terminal domain (CTD) code
-
D. Eick, and M. Geyer The RNA polymerase II carboxy-terminal domain (CTD) code Chem. Rev. 113 2013 8456 8490 10.1021/cr400071f
-
(2013)
Chem. Rev.
, vol.113
, pp. 8456-8490
-
-
Eick, D.1
Geyer, M.2
-
34
-
-
77957786100
-
Gene-specific RNA polymerase II phosphorylation and the CTD code
-
H. Kim, B. Erickson, W. Luo, D. Seward, J.H. Graber, D.D. Pollock, and et al. Gene-specific RNA polymerase II phosphorylation and the CTD code Nat. Struct. Mol. Biol. 17 2011 1279 1286 10.1038/nsmb.1913
-
(2011)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1279-1286
-
-
Kim, H.1
Erickson, B.2
Luo, W.3
Seward, D.4
Graber, J.H.5
Pollock, D.D.6
-
35
-
-
77957766550
-
Uniform transitions of the general RNA polymerase II transcription complex
-
A. Mayer, M. Lidschreiber, M. Siebert, K. Leike, J. Soding, and P. Cramer Uniform transitions of the general RNA polymerase II transcription complex Nat. Struct. Mol. Biol. 17 2011 1272 1278 10.1038/nsmb.1903
-
(2011)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1272-1278
-
-
Mayer, A.1
Lidschreiber, M.2
Siebert, M.3
Leike, K.4
Soding, J.5
Cramer, P.6
-
36
-
-
77956344274
-
Chemical-genomic dissection of the CTD code
-
J.R. Tietjen, D.W. Zhang, J.B. Rodríguez-Molina, B.E. White, M.S. Akhtar, M. Heidemann, and et al. Chemical-genomic dissection of the CTD code Nat. Struct. Mol. Biol. 17 2010 1154 1161 10.1038/nsmb.1900
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 1154-1161
-
-
Tietjen, J.R.1
Zhang, D.W.2
Rodríguez-Molina, J.B.3
White, B.E.4
Akhtar, M.S.5
Heidemann, M.6
-
37
-
-
0035893314
-
Opposing effects of Ctk1 kinase and Fcp1 phosphatase at ser 2 of the RNA polymerase II C-terminal domain
-
E.J. Cho, M.S. Kobor, M. Kim, J. Greenblatt, and S. Buratowski Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain Genes. Dev. 15 2001 3319 3329 10.1101/gad.935901
-
(2001)
Genes. Dev.
, vol.15
, pp. 3319-3329
-
-
Cho, E.J.1
Kobor, M.S.2
Kim, M.3
Greenblatt, J.4
Buratowski, S.5
-
38
-
-
1542290655
-
Transitions in RNA polymerase II elongation complexes at the 3' ends of genes
-
M. Kim, S.-H. Ahn, N.J. Krogan, J.F. Greenblatt, and S. Buratowski Transitions in RNA polymerase II elongation complexes at the 3' ends of genes EMBO J. 23 2004 354 364 10.1038/sj.emboj.7600053
-
(2004)
EMBO J.
, vol.23
, pp. 354-364
-
-
Kim, M.1
Ahn, S.-H.2
Krogan, N.J.3
Greenblatt, J.F.4
Buratowski, S.5
-
39
-
-
22344443368
-
CTD-dependent dismantling of the RNA polymerase II elongation complex by the pre-mRNA 3'-end processing factor, Pcf11
-
Z. Zhang, J. Fu, and D.S. Gilmour CTD-dependent dismantling of the RNA polymerase II elongation complex by the pre-mRNA 3'-end processing factor, Pcf11 Genes. Dev. 19 2005 1572 1580 10.1101/gad.1296305
-
(2005)
Genes. Dev.
, vol.19
, pp. 1572-1580
-
-
Zhang, Z.1
Fu, J.2
Gilmour, D.S.3
-
40
-
-
9644310314
-
The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II
-
M. Kim, N.J. Krogan, L. Vasiljeva, O.J. Rando, E. Nedea, J.F. Greenblatt, and et al. The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II Nature 432 2004 517 522 10.1038/nature03041
-
(2004)
Nature
, vol.432
, pp. 517-522
-
-
Kim, M.1
Krogan, N.J.2
Vasiljeva, L.3
Rando, O.J.4
Nedea, E.5
Greenblatt, J.F.6
-
41
-
-
9644308046
-
Human 5′ - > 3′ exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites
-
S. West, N. Gromak, and N.J. Proudfoot Human 5′ - > 3′ exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites Nature 432 2004 522 525 10.1038/nature03035
-
(2004)
Nature
, vol.432
, pp. 522-525
-
-
West, S.1
Gromak, N.2
Proudfoot, N.J.3
-
42
-
-
33645844251
-
The role of Rat1 in coupling mRNA 3′-end processing to transcription termination: Implications for a unified allosteric-torpedo model
-
W. Luo, A.W. Johnson, and D.L. Bentley The role of Rat1 in coupling mRNA 3′-end processing to transcription termination: implications for a unified allosteric-torpedo model Genes. Dev. 20 2006 954 965 10.1101/gad.1409106
-
(2006)
Genes. Dev.
, vol.20
, pp. 954-965
-
-
Luo, W.1
Johnson, A.W.2
Bentley, D.L.3
-
43
-
-
11844270415
-
Yeast poly(A)-binding protein, Pab1, and PAN, a poly(A) nuclease complex recruited by Pab1, connect mRNA biogenesis to export
-
E.F. Dunn, C.M. Hammell, C.A. Hodge, and C.N. Cole Yeast poly(A)-binding protein, Pab1, and PAN, a poly(A) nuclease complex recruited by Pab1, connect mRNA biogenesis to export Genes. Dev. 19 2005 90 103 10.1101/gad.1267005
-
(2005)
Genes. Dev.
, vol.19
, pp. 90-103
-
-
Dunn, E.F.1
Hammell, C.M.2
Hodge, C.A.3
Cole, C.N.4
-
44
-
-
0037007218
-
Dual requirement for yeast hnRNP Nab2p in mRNA poly(A) tail length control and nuclear export
-
R.E. Hector, K.R. Nykamp, S. Dheur, J.T. Anderson, P.J. Non, C.R. Urbinati, and et al. Dual requirement for yeast hnRNP Nab2p in mRNA poly(A) tail length control and nuclear export EMBO J. 21 2002 1800 1810 10.1093/emboj/21.7.1800
-
(2002)
EMBO J.
, vol.21
, pp. 1800-1810
-
-
Hector, R.E.1
Nykamp, K.R.2
Dheur, S.3
Anderson, J.T.4
Non, P.J.5
Urbinati, C.R.6
-
45
-
-
33748424364
-
Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3
-
J.T. Arigo, D.E. Eyler, K.L. Carroll, and J.L. Corden Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3 Mol. Cell 23 2006 841 851
-
(2006)
Mol. Cell
, vol.23
, pp. 841-851
-
-
Arigo, J.T.1
Eyler, D.E.2
Carroll, K.L.3
Corden, J.L.4
-
46
-
-
0035921929
-
RNA-binding protein Nrd1 directs poly(A)-independent 3′-end formation of RNA polymerase II transcripts
-
E.J. Steinmetz, N.K. Conrad, D.A. Brow, and J.L. Corden RNA-binding protein Nrd1 directs poly(A)-independent 3′-end formation of RNA polymerase II transcripts Nature 413 2001 327 331
-
(2001)
Nature
, vol.413
, pp. 327-331
-
-
Steinmetz, E.J.1
Conrad, N.K.2
Brow, D.A.3
Corden, J.L.4
-
47
-
-
33748435751
-
Transcription termination and nuclear degradation of cryptic unstable transcripts: A role for the nrd1-nab3 pathway in genome surveillance
-
M. Thiebaut, E. Kisseleva-Romanova, M. Rougemaille, J. Boulay, and D. Libri Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance Mol. Cell 23 2006 853 864
-
(2006)
Mol. Cell
, vol.23
, pp. 853-864
-
-
Thiebaut, M.1
Kisseleva-Romanova, E.2
Rougemaille, M.3
Boulay, J.4
Libri, D.5
-
48
-
-
33847284995
-
Interaction of yeast RNA-binding proteins Nrd1 and Nab3 with RNA polymerase II terminator elements
-
K.L. Carroll, R. Ghirlando, J.M. Ames, and J.L. Corden Interaction of yeast RNA-binding proteins Nrd1 and Nab3 with RNA polymerase II terminator elements RNA 13 2007 361 373 10.1261/rna.338407
-
(2007)
RNA
, vol.13
, pp. 361-373
-
-
Carroll, K.L.1
Ghirlando, R.2
Ames, J.M.3
Corden, J.L.4
-
49
-
-
84867036854
-
In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination
-
O. Porrua, F. Hobor, J. Boulay, K. Kubicek, Y. D'Aubenton-Carafa, R.K. Gudipati, and et al. In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination EMBO J. 31 2012 3935 3948 10.1038/emboj.2012.237
-
(2012)
EMBO J.
, vol.31
, pp. 3935-3948
-
-
Porrua, O.1
Hobor, F.2
Boulay, J.3
Kubicek, K.4
D'Aubenton-Carafa, Y.5
Gudipati, R.K.6
-
50
-
-
0026773782
-
Gene products that promote mRNA turnover in Saccharomyces cerevisiae
-
P. Leeds, J.M. Wood, B.S. Lee, and M.R. Culbertson Gene products that promote mRNA turnover in Saccharomyces cerevisiae Mol. Cell. Biol. 12 1992 2165 2177
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 2165-2177
-
-
Leeds, P.1
Wood, J.M.2
Lee, B.S.3
Culbertson, M.R.4
-
51
-
-
84880144255
-
A bacterial-like mechanism for transcription termination by the Sen1p helicase in budding yeast
-
O. Porrua, and D. Libri A bacterial-like mechanism for transcription termination by the Sen1p helicase in budding yeast Nat. Struct. Mol. Biol. 20 2013 884 891 10.1038/nsmb.2592
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 884-891
-
-
Porrua, O.1
Libri, D.2
-
52
-
-
49449105283
-
Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice
-
R.K. Gudipati, T. Villa, J. Boulay, and D. Libri Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice Nat. Struct. Mol. Biol. 15 2008 786 794 10.1038/nsmb.1460
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 786-794
-
-
Gudipati, R.K.1
Villa, T.2
Boulay, J.3
Libri, D.4
-
53
-
-
84865845346
-
Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1
-
K. Kubicek, H. Cerna, P. Holub, J. Pasulka, D. Hrossova, F. Loehr, and et al. Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1 Genes. Dev. 26 2012 1891 1896 10.1101/gad.192781.112
-
(2012)
Genes. Dev.
, vol.26
, pp. 1891-1896
-
-
Kubicek, K.1
Cerna, H.2
Holub, P.3
Pasulka, J.4
Hrossova, D.5
Loehr, F.6
-
54
-
-
49449110180
-
The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain
-
L. Vasiljeva, M. Kim, H. Mutschler, S. Buratowski, and A. Meinhart The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain Nat. Struct. Mol. Biol. 15 2008 795 804 10.1038/nsmb.1468
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 795-804
-
-
Vasiljeva, L.1
Kim, M.2
Mutschler, H.3
Buratowski, S.4
Meinhart, A.5
-
55
-
-
84905583138
-
Molecular basis for coordinating transcription termination with noncoding RNA degradation
-
A. Tudek, O. Porrua, T. Kabzinski, M. Lidschreiber, K. Kubicek, A. Fortova, and et al. Molecular basis for coordinating transcription termination with noncoding RNA degradation Mol. Cell 55 2014 467 481 10.1016/j.molcel.2014.05.031
-
(2014)
Mol. Cell
, vol.55
, pp. 467-481
-
-
Tudek, A.1
Porrua, O.2
Kabzinski, T.3
Lidschreiber, M.4
Kubicek, K.5
Fortova, A.6
-
56
-
-
84890905264
-
The RNA polymerase II C-terminal domain-interacting domain of yeast Nrd1 contributes to the choice of termination pathway and couples to RNA processing by the nuclear exosome
-
D. Heo, I. Yoo, J. Kong, M. Lidschreiber, A. Mayer, B.-Y. Choi, and et al. The RNA polymerase II C-terminal domain-interacting domain of yeast Nrd1 contributes to the choice of termination pathway and couples to RNA processing by the nuclear exosome J. Biol. Chem. 288 2013 36676 36690 10.1074/jbc.M113.508267
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 36676-36690
-
-
Heo, D.1
Yoo, I.2
Kong, J.3
Lidschreiber, M.4
Mayer, A.5
Choi, B.-Y.6
-
57
-
-
44949166705
-
Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast
-
M.H. Jenks, T.W. O'Rourke, and D. Reines Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast Mol. Cell. Biol. 28 2008 3883 3893 10.1128/MCB.00380-08
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 3883-3893
-
-
Jenks, M.H.1
O'Rourke, T.W.2
Reines, D.3
-
58
-
-
33645226793
-
Cis- and trans-Acting determinants of transcription termination by yeast RNA polymerase II
-
E.J. Steinmetz, S.B.H. Ng, J.P. Cloute, and D.A. Brow cis- and trans-Acting determinants of transcription termination by yeast RNA polymerase II Mol. Cell. Biol. 26 2006 2688 2696 10.1128/MCB.26.7.2688-2696.2006
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 2688-2696
-
-
Steinmetz, E.J.1
Ng, S.B.H.2
Cloute, J.P.3
Brow, D.A.4
-
59
-
-
30744467674
-
Nrd1 interacts with the nuclear exosome for 3′ processing of RNA polymerase II transcripts
-
L. Vasiljeva, and S. Buratowski Nrd1 interacts with the nuclear exosome for 3′ processing of RNA polymerase II transcripts Mol. Cell 21 2006 239 248 10.1016/j.molcel.2005.11.028
-
(2006)
Mol. Cell
, vol.21
, pp. 239-248
-
-
Vasiljeva, L.1
Buratowski, S.2
-
60
-
-
84908315092
-
Genome-wide mapping of yeast RNA polymerase II termination
-
P. Schaughency, J. Merran, and J.L. Corden Genome-wide mapping of yeast RNA polymerase II termination PLoS Genet. 10 2014 e1004632 10.1371/journal.pgen.1004632
-
(2014)
PLoS Genet.
, vol.10
, pp. e1004632
-
-
Schaughency, P.1
Merran, J.2
Corden, J.L.3
-
61
-
-
33751506478
-
Distinct pathways for snoRNA and mRNA termination
-
M. Kim, L. Vasiljeva, O.J. Rando, A. Zhelkovsky, C. Moore, and S. Buratowski Distinct pathways for snoRNA and mRNA termination Mol. Cell 24 2006 723 734 10.1016/j.molcel.2006.11.011
-
(2006)
Mol. Cell
, vol.24
, pp. 723-734
-
-
Kim, M.1
Vasiljeva, L.2
Rando, O.J.3
Zhelkovsky, A.4
Moore, C.5
Buratowski, S.6
-
62
-
-
57049087519
-
The role of the putative 3′ end processing endonuclease Ysh1p in mRNA and snoRNA synthesis
-
M. Garas, B. Dichtl, and W. Keller The role of the putative 3′ end processing endonuclease Ysh1p in mRNA and snoRNA synthesis RNA N. Y. N. 14 2008 2671 2684 10.1261/rna.1293008
-
(2008)
RNA N. Y. N.
, vol.14
, pp. 2671-2684
-
-
Garas, M.1
Dichtl, B.2
Keller, W.3
-
63
-
-
84867285810
-
A genetic screen for terminator function in yeast identifies a role for a new functional domain in termination factor Nab3
-
T.J. Loya, T.W. O'Rourke, and D. Reines A genetic screen for terminator function in yeast identifies a role for a new functional domain in termination factor Nab3 Nucleic Acids Res. 40 2012 7476 7491 10.1093/nar/gks377
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 7476-7491
-
-
Loya, T.J.1
O'Rourke, T.W.2
Reines, D.3
-
64
-
-
3242707680
-
Coupling between snoRNP assembly and 3' processing controls box C/D snoRNA biosynthesis in yeast
-
M. Morlando, M. Ballarino, P. Greco, E. Caffarelli, B. Dichtl, and I. Bozzoni Coupling between snoRNP assembly and 3' processing controls box C/D snoRNA biosynthesis in yeast EMBO J. 23 2004 2392 2401 10.1038/sj.emboj.7600254
-
(2004)
EMBO J.
, vol.23
, pp. 2392-2401
-
-
Morlando, M.1
Ballarino, M.2
Greco, P.3
Caffarelli, E.4
Dichtl, B.5
Bozzoni, I.6
-
65
-
-
40649121318
-
The Glc7 phosphatase subunit of the cleavage and polyadenylation factor is essential for transcription termination on snoRNA genes
-
E. Nedea, D. Nalbant, D. Xia, N.T. Theoharis, B. Suter, C.J. Richardson, and et al. The Glc7 phosphatase subunit of the cleavage and polyadenylation factor is essential for transcription termination on snoRNA genes Mol. Cell 29 2008 577 587 10.1016/j.molcel.2007.12.031
-
(2008)
Mol. Cell
, vol.29
, pp. 577-587
-
-
Nedea, E.1
Nalbant, D.2
Xia, D.3
Theoharis, N.T.4
Suter, B.5
Richardson, C.J.6
-
66
-
-
53949109201
-
Polyadenylation linked to transcription termination directs the processing of snoRNA precursors in yeast
-
P. Grzechnik, and J. Kufel Polyadenylation linked to transcription termination directs the processing of snoRNA precursors in yeast Mol. Cell 32 2008 247 258 10.1016/j.molcel.2008.10.003
-
(2008)
Mol. Cell
, vol.32
, pp. 247-258
-
-
Grzechnik, P.1
Kufel, J.2
-
67
-
-
0041690972
-
Ssu72 protein mediates both poly(A)-coupled and poly(A)-independent termination of RNA polymerase II transcription
-
E.J. Steinmetz, and D.A. Brow Ssu72 protein mediates both poly(A)-coupled and poly(A)-independent termination of RNA polymerase II transcription Mol. Cell. Biol. 23 2003 6339 6349
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 6339-6349
-
-
Steinmetz, E.J.1
Brow, D.A.2
-
68
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Y. Ho, A. Gruhler, A. Heilbut, G.D. Bader, L. Moore, S.-L. Adams, and et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry Nature 415 2002 180 183 10.1038/415180a
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.-L.6
-
69
-
-
0037133234
-
Novel interactions of Saccharomyces cerevisiae type 1 protein phosphatase identified by single-step affinity purification and mass spectrometry
-
E.P. Walsh, D.J. Lamont, K.A. Beattie, and M.J.R. Stark Novel interactions of Saccharomyces cerevisiae type 1 protein phosphatase identified by single-step affinity purification and mass spectrometry Biochemistry (Mosc.) 41 2002 2409 2420
-
(2002)
Biochemistry (Mosc.)
, vol.41
, pp. 2409-2420
-
-
Walsh, E.P.1
Lamont, D.J.2
Beattie, K.A.3
Stark, M.J.R.4
-
70
-
-
70349765676
-
Yeast RNase III triggers polyadenylation-independent transcription termination
-
G. Ghazal, J. Gagnon, P.-E. Jacques, J.-R. Landry, F. Robert, and S.A. Elela Yeast RNase III triggers polyadenylation-independent transcription termination Mol. Cell 36 2009 99 109 10.1016/j.molcel.2009.07.029
-
(2009)
Mol. Cell
, vol.36
, pp. 99-109
-
-
Ghazal, G.1
Gagnon, J.2
Jacques, P.-E.3
Landry, J.-R.4
Robert, F.5
Elela, S.A.6
-
71
-
-
70349779344
-
Fail-safe transcriptional termination for protein-coding genes in S. Cerevisiae
-
A.G. Rondón, H.E. Mischo, J. Kawauchi, and N.J. Proudfoot Fail-safe transcriptional termination for protein-coding genes in S. cerevisiae Mol. Cell 36 2009 88 98 10.1016/j.molcel.2009.07.028
-
(2009)
Mol. Cell
, vol.36
, pp. 88-98
-
-
Rondón, A.G.1
Mischo, H.E.2
Kawauchi, J.3
Proudfoot, N.J.4
-
72
-
-
0028824921
-
Transcription termination of RNA polymerase i due to a T-rich element interacting with Reb1p
-
W.H. Lang, and R.H. Reeder Transcription termination of RNA polymerase I due to a T-rich element interacting with Reb1p Proc. Natl. Acad. Sci. U. S. A. 92 1995 9781 9785
-
(1995)
Proc. Natl. Acad. Sci. U. S. A.
, vol.92
, pp. 9781-9785
-
-
Lang, W.H.1
Reeder, R.H.2
-
73
-
-
0028237240
-
The mechanism of transcription termination by RNA polymerase i
-
R.H. Reeder, and W. Lang The mechanism of transcription termination by RNA polymerase I Mol. Microbiol. 12 1994 11 15
-
(1994)
Mol. Microbiol.
, vol.12
, pp. 11-15
-
-
Reeder, R.H.1
Lang, W.2
-
74
-
-
84865239020
-
The Reb1-homologue Ydr026c/Nsi1 is required for efficient RNA polymerase i termination in yeast
-
A. Reiter, S. Hamperl, H. Seitz, P. Merkl, J. Perez-Fernandez, L. Williams, and et al. The Reb1-homologue Ydr026c/Nsi1 is required for efficient RNA polymerase I termination in yeast EMBO J. 31 2012 3480 3493 10.1038/emboj.2012.185
-
(2012)
EMBO J.
, vol.31
, pp. 3480-3493
-
-
Reiter, A.1
Hamperl, S.2
Seitz, H.3
Merkl, P.4
Perez-Fernandez, J.5
Williams, L.6
-
75
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
C.T. Harbison, D.B. Gordon, T.I. Lee, N.J. Rinaldi, K.D. Macisaac, T.W. Danford, and et al. Transcriptional regulatory code of a eukaryotic genome Nature 431 2004 99 104 10.1038/nature02800
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
Danford, T.W.6
-
76
-
-
84919476067
-
Roadblock termination by reb1p restricts cryptic and readthrough transcription
-
J. Colin, T. Candelli, O. Porrua, J. Boulay, C. Zhu, F. Lacroute, and et al. Roadblock termination by reb1p restricts cryptic and readthrough transcription Mol. Cell 56 2014 667 680 10.1016/j.molcel.2014.10.026
-
(2014)
Mol. Cell
, vol.56
, pp. 667-680
-
-
Colin, J.1
Candelli, T.2
Porrua, O.3
Boulay, J.4
Zhu, C.5
Lacroute, F.6
-
77
-
-
0028359822
-
Defining the sequence specificity of the Saccharomyces cerevisiae DNA binding protein REB1p by selecting binding sites from random-sequence oligonucleotides
-
P.C. Liaw, and C.J. Brandl Defining the sequence specificity of the Saccharomyces cerevisiae DNA binding protein REB1p by selecting binding sites from random-sequence oligonucleotides Yeast Chichester Engl. 10 1994 771 787 10.1002/yea.320100608
-
(1994)
Yeast Chichester Engl.
, vol.10
, pp. 771-787
-
-
Liaw, P.C.1
Brandl, C.J.2
-
78
-
-
65249164132
-
Mechanisms that specify promoter nucleosome location and identity
-
P.D. Hartley, and H.D. Madhani Mechanisms that specify promoter nucleosome location and identity Cell 137 2009 445 458 10.1016/j.cell.2009.02.043
-
(2009)
Cell
, vol.137
, pp. 445-458
-
-
Hartley, P.D.1
Madhani, H.D.2
-
79
-
-
84872414012
-
Ubiquitylation and degradation of elongating RNA polymerase II: The last resort
-
M.D. Wilson, M. Harreman, and J.Q. Svejstrup Ubiquitylation and degradation of elongating RNA polymerase II: the last resort Biochim. Biophys. Acta 1829 2013 151 157 10.1016/j.bbagrm.2012.08.002
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 151-157
-
-
Wilson, M.D.1
Harreman, M.2
Svejstrup, J.Q.3
-
80
-
-
84926180327
-
The RNA exosome promotes transcription termination of backtracked RNA polymerase II
-
J.-F. Lemay, M. Larochelle, S. Marguerat, S. Atkinson, J. Bähler, and F. Bachand The RNA exosome promotes transcription termination of backtracked RNA polymerase II Nat. Struct. Mol. Biol. 21 2014 919 926 10.1038/nsmb.2893
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 919-926
-
-
Lemay, J.-F.1
Larochelle, M.2
Marguerat, S.3
Atkinson, S.4
Bähler, J.5
Bachand, F.6
-
81
-
-
84872386768
-
Structural basis of transcription elongation
-
F.W. Martinez-Rucobo, and P. Cramer Structural basis of transcription elongation Biochim. Biophys. Acta 1829 2013 9 19 10.1016/j.bbagrm.2012.09.002
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 9-19
-
-
Martinez-Rucobo, F.W.1
Cramer, P.2
-
82
-
-
84880177044
-
Bimodal expression of PHO84 is modulated by early termination of antisense transcription
-
M. Castelnuovo, S. Rahman, E. Guffanti, V. Infantino, F. Stutz, and D. Zenklusen Bimodal expression of PHO84 is modulated by early termination of antisense transcription Nat. Struct. Mol. Biol. 20 2013 851 858 10.1038/nsmb.2598
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 851-858
-
-
Castelnuovo, M.1
Rahman, S.2
Guffanti, E.3
Infantino, V.4
Stutz, F.5
Zenklusen, D.6
-
83
-
-
84857395611
-
Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment
-
S.L. Bumgarner, G. Neuert, B.F. Voight, A. Symbor-Nagrabska, P. Grisafi, A. van Oudenaarden, and et al. Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment Mol. Cell. 45 2012 470 482 10.1016/j.molcel.2011.11.029
-
(2012)
Mol. Cell.
, vol.45
, pp. 470-482
-
-
Bumgarner, S.L.1
Neuert, G.2
Voight, B.F.3
Symbor-Nagrabska, A.4
Grisafi, P.5
Van Oudenaarden, A.6
-
84
-
-
27744533201
-
Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae
-
J.A. Martens, P.-Y.J. Wu, and F. Winston Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae Genes Dev. 19 2005 2695 2704 10.1101/gad.1367605
-
(2005)
Genes Dev.
, vol.19
, pp. 2695-2704
-
-
Martens, J.A.1
Wu, P.-Y.J.2
Winston, F.3
-
85
-
-
33750814968
-
Antisense transcription controls cell fate in Saccharomyces cerevisiae
-
C.F. Hongay, P.L. Grisafi, T. Galitski, and G.R. Fink Antisense transcription controls cell fate in Saccharomyces cerevisiae Cell 127 2006 735 745
-
(2006)
Cell
, vol.127
, pp. 735-745
-
-
Hongay, C.F.1
Grisafi, P.L.2
Galitski, T.3
Fink, G.R.4
-
86
-
-
79951801979
-
Antisense expression increases gene expression variability and locus interdependency
-
Z. Xu, W. Wei, J. Gagneur, S. Clauder-Munster, M. Smolik, W. Huber, and et al. Antisense expression increases gene expression variability and locus interdependency Mol. Syst. Biol. 7 2011 468 10.1038/msb.2011.1
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 468
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
Clauder-Munster, S.4
Smolik, M.5
Huber, W.6
-
87
-
-
36048951040
-
Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. Cerevisiae
-
J. Camblong, N. Iglesias, C. Fickentscher, G. Dieppois, and F. Stutz Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae Cell 131 2007 706 717 10.1016/j.cell.2007.09.014
-
(2007)
Cell
, vol.131
, pp. 706-717
-
-
Camblong, J.1
Iglesias, N.2
Fickentscher, C.3
Dieppois, G.4
Stutz, F.5
-
88
-
-
47349099971
-
Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation
-
J.N. Kuehner, and D.A. Brow Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation Mol. Cell 31 2008 201 211 10.1016/j.molcel.2008.05.018
-
(2008)
Mol. Cell
, vol.31
, pp. 201-211
-
-
Kuehner, J.N.1
Brow, D.A.2
-
89
-
-
50249183162
-
Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. Cerevisiae
-
M. Thiebaut, J. Colin, H. Neil, A. Jacquier, B. Séraphin, F. Lacroute, and et al. Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae Mol. Cell 31 2008 671 682 10.1016/j.molcel.2008.08.010
-
(2008)
Mol. Cell
, vol.31
, pp. 671-682
-
-
Thiebaut, M.1
Colin, J.2
Neil, H.3
Jacquier, A.4
Séraphin, B.5
Lacroute, F.6
-
90
-
-
77955975125
-
Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species
-
M. Yassour, J. Pfiffner, J.Z. Levin, X. Adiconis, A. Gnirke, C. Nusbaum, and et al. Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species Genome Biol. 11 2010 R87 10.1186/gb-2010-11-8-r87
-
(2010)
Genome Biol.
, vol.11
, pp. R87
-
-
Yassour, M.1
Pfiffner, J.2
Levin, J.Z.3
Adiconis, X.4
Gnirke, A.5
Nusbaum, C.6
-
91
-
-
57149101122
-
Single-RNA counting reveals alternative modes of gene expression in yeast
-
D. Zenklusen, D.R. Larson, and R.H. Singer Single-RNA counting reveals alternative modes of gene expression in yeast Nat. Struct. Mol. Biol. 15 2008 1263 1271 10.1038/nsmb.1514
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 1263-1271
-
-
Zenklusen, D.1
Larson, D.R.2
Singer, R.H.3
-
92
-
-
84922489184
-
Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes
-
N.T. Ingolia, G.A. Brar, N. Stern-Ginossar, M.S. Harris, G.J.S. Talhouarne, S.E. Jackson, and et al. Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes Cell Rep. 8 2014 1365 1379 10.1016/j.celrep.2014.07.045
-
(2014)
Cell Rep.
, vol.8
, pp. 1365-1379
-
-
Ingolia, N.T.1
Brar, G.A.2
Stern-Ginossar, N.3
Harris, M.S.4
Talhouarne, G.J.S.5
Jackson, S.E.6
|