메뉴 건너뛰기




Volumn 56, Issue 5, 2014, Pages 667-680

Roadblock termination by reb1p restricts cryptic and readthrough transcription

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; POLYADENYLATED RNA; PROTEIN; REB1P PROTEIN; RNA POLYMERASE II; SINGLE STRANDED DNA; SINGLE STRANDED RNA; SPACER DNA; STH1P PROTEIN; UNCLASSIFIED DRUG; DNA BINDING PROTEIN; FUNGAL RNA; MESSENGER RNA; REB1 PROTEIN, S CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEIN; TRANSCRIPTION FACTOR;

EID: 84919476067     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2014.10.026     Document Type: Article
Times cited : (49)

References (53)
  • 1
    • 33748424364 scopus 로고    scopus 로고
    • Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3
    • Arigo J.T., Eyler D.E., Carroll K.L., Corden J.L. Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3. Mol. Cell 2006, 23:841-851.
    • (2006) Mol. Cell , vol.23 , pp. 841-851
    • Arigo, J.T.1    Eyler, D.E.2    Carroll, K.L.3    Corden, J.L.4
  • 2
    • 80051668431 scopus 로고    scopus 로고
    • Roadblock repression of transcription by Bacillus subtilis CodY
    • Belitsky B.R., Sonenshein A.L. Roadblock repression of transcription by Bacillus subtilis CodY. J.Mol. Biol. 2011, 411:729-743.
    • (2011) J.Mol. Biol. , vol.411 , pp. 729-743
    • Belitsky, B.R.1    Sonenshein, A.L.2
  • 3
    • 0025291145 scopus 로고
    • A nucleosome-positioning sequence is required for GCN4 to activate transcription in the absence of a TATA element
    • Brandl C.J., Struhl K. A nucleosome-positioning sequence is required for GCN4 to activate transcription in the absence of a TATA element. Mol. Cell. Biol. 1990, 10:4256-4265.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 4256-4265
    • Brandl, C.J.1    Struhl, K.2
  • 4
    • 84857395611 scopus 로고    scopus 로고
    • Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment
    • Bumgarner S.L., Neuert G., Voight B.F., Symbor-Nagrabska A., Grisafi P., van Oudenaarden A., Fink G.R. Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment. Mol. Cell 2012, 45:470-482.
    • (2012) Mol. Cell , vol.45 , pp. 470-482
    • Bumgarner, S.L.1    Neuert, G.2    Voight, B.F.3    Symbor-Nagrabska, A.4    Grisafi, P.5    van Oudenaarden, A.6    Fink, G.R.7
  • 6
    • 78751659330 scopus 로고    scopus 로고
    • Nascent transcript sequencing visualizes transcription at nucleotide resolution
    • Churchman L.S., Weissman J.S. Nascent transcript sequencing visualizes transcription at nucleotide resolution. Nature 2011, 469:368-373.
    • (2011) Nature , vol.469 , pp. 368-373
    • Churchman, L.S.1    Weissman, J.S.2
  • 7
    • 0024447921 scopus 로고
    • RNA polymerase II transcription termination is mediated specifically by protein binding to a CCAAT box sequence
    • Connelly S., Manley J.L. RNA polymerase II transcription termination is mediated specifically by protein binding to a CCAAT box sequence. Mol. Cell. Biol. 1989, 9:5254-5259.
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 5254-5259
    • Connelly, S.1    Manley, J.L.2
  • 8
    • 80054759888 scopus 로고    scopus 로고
    • Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1
    • Creamer T.J., Darby M.M., Jamonnak N., Schaughency P., Hao H., Wheelan S.J., Corden J.L. Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1. PLoS Genet. 2011, 7:e1002329.
    • (2011) PLoS Genet. , vol.7 , pp. e1002329
    • Creamer, T.J.1    Darby, M.M.2    Jamonnak, N.3    Schaughency, P.4    Hao, H.5    Wheelan, S.J.6    Corden, J.L.7
  • 9
    • 0025266066 scopus 로고
    • RNA polymerase II transcription blocked by Escherichia coli lac repressor
    • Deuschle U., Hipskind R.A., Bujard H. RNA polymerase II transcription blocked by Escherichia coli lac repressor. Science 1990, 248:480-483.
    • (1990) Science , vol.248 , pp. 480-483
    • Deuschle, U.1    Hipskind, R.A.2    Bujard, H.3
  • 10
    • 0029031546 scopus 로고
    • Molecular coevolution of mammalian ribosomal gene terminator sequences and the transcription termination factor TTF-I
    • Evers R., Grummt I. Molecular coevolution of mammalian ribosomal gene terminator sequences and the transcription termination factor TTF-I. Proc. Natl. Acad. Sci. USA 1995, 92:5827-5831.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 5827-5831
    • Evers, R.1    Grummt, I.2
  • 11
    • 0028936586 scopus 로고
    • Different domains of the murine RNA polymerase I-specific termination factor mTTF-I serve distinct functions in transcription termination
    • Evers R., Smid A., Rudloff U., Lottspeich F., Grummt I. Different domains of the murine RNA polymerase I-specific termination factor mTTF-I serve distinct functions in transcription termination. EMBO J. 1995, 14:1248-1256.
    • (1995) EMBO J. , vol.14 , pp. 1248-1256
    • Evers, R.1    Smid, A.2    Rudloff, U.3    Lottspeich, F.4    Grummt, I.5
  • 12
    • 0030798070 scopus 로고    scopus 로고
    • A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae
    • Garí E., Piedrafita L., Aldea M., Herrero E. A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae. Yeast 1997, 13:837-848.
    • (1997) Yeast , vol.13 , pp. 837-848
    • Garí, E.1    Piedrafita, L.2    Aldea, M.3    Herrero, E.4
  • 14
  • 15
    • 49449105283 scopus 로고    scopus 로고
    • Phosphorylation of theRNA polymerase II C-terminal domain dictates transcription termination choice
    • Gudipati R.K., Villa T., Boulay J., Libri D. Phosphorylation of theRNA polymerase II C-terminal domain dictates transcription termination choice. Nat. Struct. Mol. Biol. 2008, 15:786-794.
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 786-794
    • Gudipati, R.K.1    Villa, T.2    Boulay, J.3    Libri, D.4
  • 19
    • 65249164132 scopus 로고    scopus 로고
    • Mechanisms that specify promoter nucleosome location and identity
    • Hartley P.D., Madhani H.D. Mechanisms that specify promoter nucleosome location and identity. Cell 2009, 137:445-458.
    • (2009) Cell , vol.137 , pp. 445-458
    • Hartley, P.D.1    Madhani, H.D.2
  • 20
    • 84872269907 scopus 로고    scopus 로고
    • Kinetic competition between RNA Polymerase II and Sen1-dependent transcription termination
    • Hazelbaker D.Z., Marquardt S., Wlotzka W., Buratowski S. Kinetic competition between RNA Polymerase II and Sen1-dependent transcription termination. Mol. Cell 2013, 49:55-66.
    • (2013) Mol. Cell , vol.49 , pp. 55-66
    • Hazelbaker, D.Z.1    Marquardt, S.2    Wlotzka, W.3    Buratowski, S.4
  • 21
    • 0026648570 scopus 로고
    • The RNA polymerase II ternary complex cleaves the nascent transcript in a 3'----5' direction in the presence of elongation factor SII
    • Izban M.G., Luse D.S. The RNA polymerase II ternary complex cleaves the nascent transcript in a 3'----5' direction in the presence of elongation factor SII. Genes Dev. 1992, 6:1342-1356.
    • (1992) Genes Dev. , vol.6 , pp. 1342-1356
    • Izban, M.G.1    Luse, D.S.2
  • 22
    • 84888187077 scopus 로고    scopus 로고
    • Dealing with pervasive transcription
    • Jensen T.H., Jacquier A., Libri D. Dealing with pervasive transcription. Mol. Cell 2013, 52:473-484.
    • (2013) Mol. Cell , vol.52 , pp. 473-484
    • Jensen, T.H.1    Jacquier, A.2    Libri, D.3
  • 23
    • 42149154858 scopus 로고    scopus 로고
    • Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination
    • Kawauchi J., Mischo H., Braglia P., Rondon A., Proudfoot N.J. Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination. Genes Dev. 2008, 22:1082-1092.
    • (2008) Genes Dev. , vol.22 , pp. 1082-1092
    • Kawauchi, J.1    Mischo, H.2    Braglia, P.3    Rondon, A.4    Proudfoot, N.J.5
  • 24
    • 3042637749 scopus 로고    scopus 로고
    • Cbf1p is required for chromatin remodeling at promoter-proximal CACGTG motifs in yeast
    • Kent N.A., Eibert S.M., Mellor J. Cbf1p is required for chromatin remodeling at promoter-proximal CACGTG motifs in yeast. J.Biol. Chem. 2004, 279:27116-27123.
    • (2004) J.Biol. Chem. , vol.279 , pp. 27116-27123
    • Kent, N.A.1    Eibert, S.M.2    Mellor, J.3
  • 25
    • 79955475464 scopus 로고    scopus 로고
    • Unravelling the means to an end: RNA polymerase II transcription termination
    • Kuehner J.N., Pearson E.L., Moore C. Unravelling the means to an end: RNA polymerase II transcription termination. Nat. Rev. Mol. Cell Biol. 2011, 12:283-294.
    • (2011) Nat. Rev. Mol. Cell Biol. , vol.12 , pp. 283-294
    • Kuehner, J.N.1    Pearson, E.L.2    Moore, C.3
  • 26
    • 0026494782 scopus 로고
    • A system to study transcription by yeast RNA polymerase I within the chromosomal context: functional analysis of the ribosomal DNA enhancer and the RBP1/REB1 binding sites
    • Kulkens T., van der Sande C.A., Dekker A.F., van Heerikhuizen H., Planta R.J. A system to study transcription by yeast RNA polymerase I within the chromosomal context: functional analysis of the ribosomal DNA enhancer and the RBP1/REB1 binding sites. EMBO J. 1992, 11:4665-4674.
    • (1992) EMBO J. , vol.11 , pp. 4665-4674
    • Kulkens, T.1    van der Sande, C.A.2    Dekker, A.F.3    van Heerikhuizen, H.4    Planta, R.J.5
  • 27
    • 0027523912 scopus 로고
    • The REB1 site is an essential component of a terminator for RNA polymerase I in Saccharomyces cerevisiae
    • Lang W.H., Reeder R.H. The REB1 site is an essential component of a terminator for RNA polymerase I in Saccharomyces cerevisiae. Mol. Cell. Biol. 1993, 13:649-658.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 649-658
    • Lang, W.H.1    Reeder, R.H.2
  • 28
    • 0028080886 scopus 로고
    • A model for transcription termination by RNA polymerase I
    • Lang W.H., Morrow B.E., Ju Q., Warner J.R., Reeder R.H. A model for transcription termination by RNA polymerase I. Cell 1994, 79:527-534.
    • (1994) Cell , vol.79 , pp. 527-534
    • Lang, W.H.1    Morrow, B.E.2    Ju, Q.3    Warner, J.R.4    Reeder, R.H.5
  • 29
    • 0036889142 scopus 로고    scopus 로고
    • Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation
    • Libri D., Dower K., Boulay J., Thomsen R., Rosbash M., Jensen T.H. Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation. Mol. Cell. Biol. 2002, 22:8254-8266.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 8254-8266
    • Libri, D.1    Dower, K.2    Boulay, J.3    Thomsen, R.4    Rosbash, M.5    Jensen, T.H.6
  • 31
    • 0031016079 scopus 로고    scopus 로고
    • Identification of a transcript release activity acting on ternary transcription complexes containing murine RNA polymerase I
    • Mason S.W., Sander E.E., Grummt I. Identification of a transcript release activity acting on ternary transcription complexes containing murine RNA polymerase I. EMBO J. 1997, 16:163-172.
    • (1997) EMBO J. , vol.16 , pp. 163-172
    • Mason, S.W.1    Sander, E.E.2    Grummt, I.3
  • 32
    • 0031547980 scopus 로고    scopus 로고
    • RNA polymerase I transcription termination: similar mechanisms are employed by yeast and mammals
    • Mason S.W., Wallisch M., Grummt I. RNA polymerase I transcription termination: similar mechanisms are employed by yeast and mammals. J.Mol. Biol. 1997, 268:229-234.
    • (1997) J.Mol. Biol. , vol.268 , pp. 229-234
    • Mason, S.W.1    Wallisch, M.2    Grummt, I.3
  • 33
    • 60549114880 scopus 로고    scopus 로고
    • Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
    • Neil H., Malabat C., d'Aubenton-Carafa Y., Xu Z., Steinmetz L.M., Jacquier A. Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 2009, 457:1038-1042.
    • (2009) Nature , vol.457 , pp. 1038-1042
    • Neil, H.1    Malabat, C.2    d'Aubenton-Carafa, Y.3    Xu, Z.4    Steinmetz, L.M.5    Jacquier, A.6
  • 34
    • 0025309753 scopus 로고
    • Elongation by Escherichia coli RNA polymerase is blocked invitro by a site-specific DNA binding protein
    • Pavco P.A., Steege D.A. Elongation by Escherichia coli RNA polymerase is blocked invitro by a site-specific DNA binding protein. J.Biol. Chem. 1990, 265:9960-9969.
    • (1990) J.Biol. Chem. , vol.265 , pp. 9960-9969
    • Pavco, P.A.1    Steege, D.A.2
  • 35
    • 84880144255 scopus 로고    scopus 로고
    • A bacterial-like mechanism for transcription termination by the Sen1p helicase in budding yeast
    • Porrua O., Libri D. A bacterial-like mechanism for transcription termination by the Sen1p helicase in budding yeast. Nat. Struct. Mol. Biol. 2013, 20:884-891.
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 884-891
    • Porrua, O.1    Libri, D.2
  • 36
    • 84867036854 scopus 로고    scopus 로고
    • Invivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination
    • Porrua O., Hobor F., Boulay J., Kubicek K., D'Aubenton-Carafa Y., Gudipati R.K., Stefl R., Libri D. Invivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination. EMBO J. 2012, 31:3935-3948.
    • (2012) EMBO J. , vol.31 , pp. 3935-3948
    • Porrua, O.1    Hobor, F.2    Boulay, J.3    Kubicek, K.4    D'Aubenton-Carafa, Y.5    Gudipati, R.K.6    Stefl, R.7    Libri, D.8
  • 37
    • 0026647901 scopus 로고
    • The RNA polymerase II elongation complex. Factor-dependent transcription elongation involves nascent RNA cleavage
    • Reines D., Ghanouni P., Li Q.Q., Mote J. The RNA polymerase II elongation complex. Factor-dependent transcription elongation involves nascent RNA cleavage. J.Biol. Chem. 1992, 267:15516-15522.
    • (1992) J.Biol. Chem. , vol.267 , pp. 15516-15522
    • Reines, D.1    Ghanouni, P.2    Li, Q.Q.3    Mote, J.4
  • 39
    • 83255164884 scopus 로고    scopus 로고
    • Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution
    • Rhee H.S., Pugh B.F. Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution. Cell 2011, 147:1408-1419.
    • (2011) Cell , vol.147 , pp. 1408-1419
    • Rhee, H.S.1    Pugh, B.F.2
  • 40
    • 70349779344 scopus 로고    scopus 로고
    • Fail-safe transcriptional termination for protein-coding genes in S. cerevisiae
    • Rondón A.G., Mischo H.E., Kawauchi J., Proudfoot N.J. Fail-safe transcriptional termination for protein-coding genes in S. cerevisiae. Mol. Cell 2009, 36:88-98.
    • (2009) Mol. Cell , vol.36 , pp. 88-98
    • Rondón, A.G.1    Mischo, H.E.2    Kawauchi, J.3    Proudfoot, N.J.4
  • 41
    • 67651095903 scopus 로고    scopus 로고
    • Stability, flexibility, and dynamic interactions of colliding RNA polymerase II elongation complexes
    • Saeki H., Svejstrup J.Q. Stability, flexibility, and dynamic interactions of colliding RNA polymerase II elongation complexes. Mol. Cell 2009, 35:191-205.
    • (2009) Mol. Cell , vol.35 , pp. 191-205
    • Saeki, H.1    Svejstrup, J.Q.2
  • 43
    • 20444428382 scopus 로고    scopus 로고
    • Multiple mechanisms confining RNA polymerase II ubiquitylation to polymerases undergoing transcriptional arrest
    • Somesh B.P., Reid J., Liu W.-F., Søgaard T.M.M., Erdjument-Bromage H., Tempst P., Svejstrup J.Q. Multiple mechanisms confining RNA polymerase II ubiquitylation to polymerases undergoing transcriptional arrest. Cell 2005, 121:913-923.
    • (2005) Cell , vol.121 , pp. 913-923
    • Somesh, B.P.1    Reid, J.2    Liu, W.-F.3    Søgaard, T.M.M.4    Erdjument-Bromage, H.5    Tempst, P.6    Svejstrup, J.Q.7
  • 44
    • 0035921929 scopus 로고    scopus 로고
    • RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts
    • Steinmetz E.J., Conrad N.K., Brow D.A., Corden J.L. RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts. Nature 2001, 413:327-331.
    • (2001) Nature , vol.413 , pp. 327-331
    • Steinmetz, E.J.1    Conrad, N.K.2    Brow, D.A.3    Corden, J.L.4
  • 46
    • 33748435751 scopus 로고    scopus 로고
    • Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance
    • Thiebaut M., Kisseleva-Romanova E., Rougemaille M., Boulay J., Libri D. Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance. Mol. Cell 2006, 23:853-864.
    • (2006) Mol. Cell , vol.23 , pp. 853-864
    • Thiebaut, M.1    Kisseleva-Romanova, E.2    Rougemaille, M.3    Boulay, J.4    Libri, D.5
  • 49
    • 84872414012 scopus 로고    scopus 로고
    • Ubiquitylation and degradation of elongating RNA polymerase II: the last resort
    • Wilson M.D., Harreman M., Svejstrup J.Q. Ubiquitylation and degradation of elongating RNA polymerase II: the last resort. Biochim. Biophys. Acta 2013, 1829:151-157.
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 151-157
    • Wilson, M.D.1    Harreman, M.2    Svejstrup, J.Q.3
  • 50
    • 79955587252 scopus 로고    scopus 로고
    • The nuclear RNA polymerase II surveillance system targets polymerase III transcripts
    • Wlotzka W., Kudla G., Granneman S., Tollervey D. The nuclear RNA polymerase II surveillance system targets polymerase III transcripts. EMBO J. 2011, 30:1790-1803.
    • (2011) EMBO J. , vol.30 , pp. 1790-1803
    • Wlotzka, W.1    Kudla, G.2    Granneman, S.3    Tollervey, D.4
  • 53
    • 57149101122 scopus 로고    scopus 로고
    • Single-RNA counting reveals alternative modes of gene expression in yeast
    • Zenklusen D., Larson D.R., Singer R.H. Single-RNA counting reveals alternative modes of gene expression in yeast. Nat. Struct. Mol. Biol. 2008, 15:1263-1271.
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 1263-1271
    • Zenklusen, D.1    Larson, D.R.2    Singer, R.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.