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Volumn 47, Issue 9, 2015, Pages 1020-1029

Genomics and drug profiling of fatal TCF3-HLFâ 'positive acute lymphoblastic leukemia identifies recurrent mutation patterns and therapeutic options

(67)  Fischer, Ute a   Forster, Michael b   Rinaldi, Anna c   Risch, Thomas d   Sungalee, Stéphanie e   Warnatz, Hans Jörg d   Bornhauser, Beat c   Gombert, Michael a   Kratsch, Christina f   Stütz, Adrian M e   Sultan, Marc d   Tchinda, Joelle c   Worth, Catherine L d   Amstislavskiy, Vyacheslav d   Badarinarayan, Nandini b   Baruchel, André g   Bartram, Thies b   Basso, Giuseppe h   Canpolat, Cengiz i   Cario, Gunnar b   more..


Author keywords

[No Author keywords available]

Indexed keywords

ANTHRACYCLINE; BORTEZOMIB; CD19 ANTIGEN; CD22 ANTIGEN; CD79B ANTIGEN; DASATINIB; DEXAMETHASONE; DNA; HLF PROTEIN; K RAS PROTEIN; LUMINESPIB; PREDNISONE; PROTEIN; PROTEIN BCL 2; PROTEIN KINASE LCK; PROTEIN TYROSINE PHOSPHATASE SHP 2; RAG1 PROTEIN; SPHINGOSINE KINASE 1; TRANSCRIPTION FACTOR 7 LIKE 1; TRANSCRIPTION FACTOR PAX5; TRANSCRIPTION FACTOR PBX1; TRANSCRIPTOME; UNCLASSIFIED DRUG; VENETOCLAX; VINCRISTINE; ANTINEOPLASTIC AGENT; ONCOPROTEIN; PAX5 PROTEIN, HUMAN; PRE-B-LYMPHOCYTE GENE 1 PROTEIN, HUMAN; SURROGATE IMMUNOGLOBULIN LIGHT CHAIN; TCF3-HLF FUSION PROTEIN, HUMAN;

EID: 84940575993     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.3362     Document Type: Article
Times cited : (185)

References (85)
  • 1
    • 34147224008 scopus 로고    scopus 로고
    • Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia
    • Mullighan, C.G. et al. Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia. Nature 446, 758-764 (2007).
    • (2007) Nature , vol.446 , pp. 758-764
    • Mullighan, C.G.1
  • 2
    • 70350519430 scopus 로고    scopus 로고
    • Deregulated expression of cytokine receptor gene, CRLF2, is involved in lymphoid transformation in B-cell precursor acute lymphoblastic leukemia
    • Russell, L.J. et al. Deregulated expression of cytokine receptor gene, CRLF2, is involved in lymphoid transformation in B-cell precursor acute lymphoblastic leukemia. Blood 114, 2688-2698 (2009).
    • (2009) Blood , vol.114 , pp. 2688-2698
    • Russell, L.J.1
  • 3
    • 70350680415 scopus 로고    scopus 로고
    • Rearrangement of CRLF2 in B-progenitor- and Down syndrome-associated acute lymphoblastic leukemia
    • Mullighan, C.G. et al. Rearrangement of CRLF2 in B-progenitor- and Down syndrome-associated acute lymphoblastic leukemia. Nat. Genet. 41, 1243-1246 (2009).
    • (2009) Nat. Genet. , vol.41 , pp. 1243-1246
    • Mullighan, C.G.1
  • 4
    • 77649214639 scopus 로고    scopus 로고
    • Down syndrome acute lymphoblastic leukemia, a highly heterogeneous disease in which aberrant expression of CRLF2 is associated with mutated JAK2: A report from the International BFM Study Group
    • Hertzberg, L. et al. Down syndrome acute lymphoblastic leukemia, a highly heterogeneous disease in which aberrant expression of CRLF2 is associated with mutated JAK2: a report from the International BFM Study Group. Blood 115, 1006-1017 (2010).
    • (2010) Blood , vol.115 , pp. 1006-1017
    • Hertzberg, L.1
  • 5
    • 84874647204 scopus 로고    scopus 로고
    • The genomic landscape of hypodiploid acute lymphoblastic leukemia
    • Holmfeldt, L. et al. The genomic landscape of hypodiploid acute lymphoblastic leukemia. Nat. Genet. 45, 242-252 (2013).
    • (2013) Nat. Genet. , vol.45 , pp. 242-252
    • Holmfeldt, L.1
  • 6
    • 80052922387 scopus 로고    scopus 로고
    • Key pathways are frequently mutated in high-risk childhood acute lymphoblastic leukemia: A report from the Children's Oncology Group
    • Zhang, J. et al. Key pathways are frequently mutated in high-risk childhood acute lymphoblastic leukemia: a report from the Children's Oncology Group. Blood 118, 3080-3087 (2011).
    • (2011) Blood , vol.118 , pp. 3080-3087
    • Zhang, J.1
  • 7
    • 84914106704 scopus 로고    scopus 로고
    • Ras pathway mutations are highly prevalent in relapsed childhood acute lymphoblastic leukaemia, may act as relapse-drivers and confer sensitivity to MEK inhibition
    • Irving, J. et al. Ras pathway mutations are highly prevalent in relapsed childhood acute lymphoblastic leukaemia, may act as relapse-drivers and confer sensitivity to MEK inhibition. Blood 124, 3420-3430 (2014).
    • (2014) Blood , vol.124 , pp. 3420-3430
    • Irving, J.1
  • 8
    • 84878341989 scopus 로고    scopus 로고
    • Acute lymphoblastic leukaemia
    • Inaba, H., Greaves, M. & Mullighan, C.G. Acute lymphoblastic leukaemia. Lancet 381, 1943-1955 (2013).
    • (2013) Lancet , vol.381 , pp. 1943-1955
    • Inaba, H.1    Greaves, M.2    Mullighan, C.G.3
  • 9
    • 44649186791 scopus 로고    scopus 로고
    • Instructive role of the transcription factor E2A in early B lymphopoiesis and germinal center B cell development
    • Kwon, K. et al. Instructive role of the transcription factor E2A in early B lymphopoiesis and germinal center B cell development. Immunity 28, 751-762 (2008).
    • (2008) Immunity , vol.28 , pp. 751-762
    • Kwon, K.1
  • 10
    • 79959600263 scopus 로고    scopus 로고
    • Prognostic impact of t(1;19)/ TCF3-PBX1 in childhood acute lymphoblastic leukemia in the context of Berlin-Frankfurt-Munster-based protocols
    • Felice, M.S. et al. Prognostic impact of t(1;19)/ TCF3-PBX1 in childhood acute lymphoblastic leukemia in the context of Berlin-Frankfurt-Munster-based protocols. Leuk. Lymphoma 52, 1215-1221 (2011).
    • (2011) Leuk. Lymphoma , vol.52 , pp. 1215-1221
    • Felice, M.S.1
  • 11
    • 0026761786 scopus 로고
    • Hlf a novel hepatic bZIP protein, shows altered DNA-binding properties following fusion to E2A in t(17;19) acute lymphoblastic leukemia
    • Hunger, S.P., Ohyashiki, K., Toyama, K. & Cleary, M.L. Hlf, a novel hepatic bZIP protein, shows altered DNA-binding properties following fusion to E2A in t(17;19) acute lymphoblastic leukemia. Genes Dev. 6, 1608-1620 (1992).
    • (1992) Genes Dev. , vol.6 , pp. 1608-1620
    • Hunger, S.P.1    Ohyashiki, K.2    Toyama, K.3    Cleary, M.L.4
  • 12
    • 33846479947 scopus 로고    scopus 로고
    • Hypercalcemia in childhood acute lymphoblastic leukemia: Frequent implication of parathyroid hormone-related peptide and E2A-HLF from translocation 17;19
    • Inukai, T. et al. Hypercalcemia in childhood acute lymphoblastic leukemia: frequent implication of parathyroid hormone-related peptide and E2A-HLF from translocation 17;19. Leukemia 21, 288-296 (2007).
    • (2007) Leukemia , vol.21 , pp. 288-296
    • Inukai, T.1
  • 13
    • 84905984253 scopus 로고    scopus 로고
    • The regulatory network of B-cell differentiation: A focused view of early B-cell factor 1 function
    • Boller, S. & Grosschedl, R. The regulatory network of B-cell differentiation: a focused view of early B-cell factor 1 function. Immunol. Rev. 261, 102-115 (2014).
    • (2014) Immunol. Rev. , vol.261 , pp. 102-115
    • Boller, S.1    Grosschedl, R.2
  • 14
    • 79751529186 scopus 로고    scopus 로고
    • The E2A-HLF oncogenic fusion protein acts through Lmo2 and Bcl-2 to immortalize hematopoietic progenitors
    • de Boer, J. et al. The E2A-HLF oncogenic fusion protein acts through Lmo2 and Bcl-2 to immortalize hematopoietic progenitors. Leukemia 25, 321-330 (2011).
    • (2011) Leukemia , vol.25 , pp. 321-330
    • De Boer, J.1
  • 15
    • 77956528501 scopus 로고    scopus 로고
    • Aberrant induction of LMO2 by the E2A-HLF chimeric transcription factor and its implication in leukemogenesis of B-precursor ALL with t(17;19)
    • Hirose, K. et al. Aberrant induction of LMO2 by the E2A-HLF chimeric transcription factor and its implication in leukemogenesis of B-precursor ALL with t(17;19). Blood 116, 962-970 (2010).
    • (2010) Blood , vol.116 , pp. 962-970
    • Hirose, K.1
  • 16
    • 0033197879 scopus 로고    scopus 로고
    • SLUG, a ces-1-related zinc fnger transcription factor gene with antiapoptotic activity, is a downstream target of the E2A-HLF oncoprotein
    • Inukai, T. et al. SLUG, a ces-1-related zinc fnger transcription factor gene with antiapoptotic activity, is a downstream target of the E2A-HLF oncoprotein. Mol. Cell 4, 343-352 (1999).
    • (1999) Mol. Cell , vol.4 , pp. 343-352
    • Inukai, T.1
  • 17
    • 19044372843 scopus 로고    scopus 로고
    • Slug, a highly conserved zinc fnger transcriptional repressor, protects hematopoietic progenitor cells from radiation-induced apoptosis in vivo
    • Inoue, A. et al. Slug, a highly conserved zinc fnger transcriptional repressor, protects hematopoietic progenitor cells from radiation-induced apoptosis in vivo. Cancer Cell 2, 279-288 (2002).
    • (2002) Cancer Cell , vol.2 , pp. 279-288
    • Inoue, A.1
  • 18
    • 0033135718 scopus 로고    scopus 로고
    • Expression of E2A-HLF chimeric protein induced T-cell apoptosis, B-cell maturation arrest, and development of acute lymphoblastic leukemia
    • Honda, H. et al. Expression of E2A-HLF chimeric protein induced T-cell apoptosis, B-cell maturation arrest, and development of acute lymphoblastic leukemia. Blood 93, 2780-2790 (1999).
    • (1999) Blood , vol.93 , pp. 2780-2790
    • Honda, H.1
  • 19
    • 0344348920 scopus 로고    scopus 로고
    • Disrupted differentiation and oncogenic transformation of lymphoid progenitors in E2A-HLF transgenic mice
    • Smith, K.S., Rhee, J.W., Naumovski, L. & Cleary, M.L. Disrupted differentiation and oncogenic transformation of lymphoid progenitors in E2A-HLF transgenic mice. Mol. Cell. Biol. 19, 4443-4451 (1999).
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 4443-4451
    • Smith, K.S.1    Rhee, J.W.2    Naumovski, L.3    Cleary, M.L.4
  • 20
    • 0030056354 scopus 로고    scopus 로고
    • Chromosomal translocations involving the E2A gene in acute lymphoblastic leukemia: Clinical features and molecular pathogenesis
    • Hunger, S.P. Chromosomal translocations involving the E2A gene in acute lymphoblastic leukemia: clinical features and molecular pathogenesis. Blood 87, 1211-1224 (1996).
    • (1996) Blood , vol.87 , pp. 1211-1224
    • Hunger, S.P.1
  • 21
    • 18744372705 scopus 로고    scopus 로고
    • Site-specifc translocation and evidence of postnatal origin of the t(1;19) E2A-PBX1 fusion in childhood acute lymphoblastic leukemia
    • Wiemels, J.L. et al. Site-specifc translocation and evidence of postnatal origin of the t(1;19) E2A-PBX1 fusion in childhood acute lymphoblastic leukemia. Proc. Natl. Acad. Sci. USA 99, 15101-15106 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 15101-15106
    • Wiemels, J.L.1
  • 22
    • 57349185631 scopus 로고    scopus 로고
    • Human chromosomal translocations at CpG sites and a theoretical basis for their lineage and stage specifcity
    • Tsai, A.G. et al. Human chromosomal translocations at CpG sites and a theoretical basis for their lineage and stage specifcity. Cell 135, 1130-1142 (2008).
    • (2008) Cell , vol.135 , pp. 1130-1142
    • Tsai, A.G.1
  • 23
    • 84907360666 scopus 로고    scopus 로고
    • A novel integrated cytogenetic and genomic classifcation refnes risk stratifcation in pediatric acute lymphoblastic leukemia
    • Moorman, A.V. et al. A novel integrated cytogenetic and genomic classifcation refnes risk stratifcation in pediatric acute lymphoblastic leukemia. Blood 124, 1434-1444 (2014).
    • (2014) Blood , vol.124 , pp. 1434-1444
    • Moorman, A.V.1
  • 24
    • 84891862152 scopus 로고    scopus 로고
    • VPREB1 deletions occur independent of lambda light chain rearrangement in childhood acute lymphoblastic leukemia
    • Mangum, D.S. et al. VPREB1 deletions occur independent of lambda light chain rearrangement in childhood acute lymphoblastic leukemia. Leukemia 28, 216-220 (2014).
    • (2014) Leukemia , vol.28 , pp. 216-220
    • Mangum, D.S.1
  • 25
    • 84859193076 scopus 로고    scopus 로고
    • The origin and nature of tightly clustered BTG1 deletions in precursor B-cell acute lymphoblastic leukemia support a model of multiclonal evolution
    • Waanders, E. et al. The origin and nature of tightly clustered BTG1 deletions in precursor B-cell acute lymphoblastic leukemia support a model of multiclonal evolution. PLoS Genet. 8, e1002533 (2012).
    • (2012) PLoS Genet. , vol.8 , pp. e1002533
    • Waanders, E.1
  • 26
    • 84875231561 scopus 로고    scopus 로고
    • B-lineage transcription factors and cooperating gene lesions required for leukemia development
    • Tijchon, E., Havinga, J., van Leeuwen, F.N. & Scheijen, B. B-lineage transcription factors and cooperating gene lesions required for leukemia development. Leukemia 27, 541-552 (2013).
    • (2013) Leukemia , vol.27 , pp. 541-552
    • Tijchon, E.1    Havinga, J.2    Van Leeuwen, F.N.3    Scheijen, B.4
  • 27
    • 84886083037 scopus 로고    scopus 로고
    • Reconstructing targetable pathways in lung cancer by integrating diverse omics data
    • Balbin, O.A. et al. Reconstructing targetable pathways in lung cancer by integrating diverse omics data. Nat. Commun. 4, 2617 (2013).
    • (2013) Nat. Commun. , vol.4 , pp. 2617
    • Balbin, O.A.1
  • 28
    • 0028353897 scopus 로고
    • Oncogenic activation of the Lck protein accompanies translocation of the LCK gene in the human HSB2 T-cell leukemia
    • Wright, D.D., Sefton, B.M. & Kamps, M.P. Oncogenic activation of the Lck protein accompanies translocation of the LCK gene in the human HSB2 T-cell leukemia. Mol. Cell. Biol. 14, 2429-2437 (1994).
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 2429-2437
    • Wright, D.D.1    Sefton, B.M.2    Kamps, M.P.3
  • 29
    • 84867051939 scopus 로고    scopus 로고
    • Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics
    • Schmitz, R. et al. Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics. Nature 490, 116-120 (2012).
    • (2012) Nature , vol.490 , pp. 116-120
    • Schmitz, R.1
  • 30
    • 84925235093 scopus 로고    scopus 로고
    • Rise and fall of subclones from diagnosis to relapse in pediatric B-acute lymphoblastic leukaemia
    • Ma, X. et al. Rise and fall of subclones from diagnosis to relapse in pediatric B-acute lymphoblastic leukaemia. Nat. Commun. 6, 6604 (2015).
    • (2015) Nat. Commun. , vol.6 , pp. 6604
    • Ma, X.1
  • 31
    • 84879421185 scopus 로고    scopus 로고
    • The transcriptional architecture of early human hematopoiesis identifes multilevel control of lymphoid commitment
    • Laurenti, E. et al. The transcriptional architecture of early human hematopoiesis identifes multilevel control of lymphoid commitment. Nat. Immunol. 14, 756-763 (2013).
    • (2013) Nat. Immunol. , vol.14 , pp. 756-763
    • Laurenti, E.1
  • 32
  • 33
    • 84864854371 scopus 로고    scopus 로고
    • + stem cell activity in mouse intestinal adenomas
    • + stem cell activity in mouse intestinal adenomas. Science 337, 730-735 (2012).
    • (2012) Science , vol.337 , pp. 730-735
    • Schepers, A.G.1
  • 34
    • 77950928164 scopus 로고    scopus 로고
    • Specifc induction of CD33 expression by E2A-HLF: The frst evidence for aberrant myeloid antigen expression in ALL by a fusion transcription factor
    • Akahane, K. et al. Specifc induction of CD33 expression by E2A-HLF: the frst evidence for aberrant myeloid antigen expression in ALL by a fusion transcription factor. Leukemia 24, 865-869 (2010).
    • (2010) Leukemia , vol.24 , pp. 865-869
    • Akahane, K.1
  • 35
    • 84894366691 scopus 로고    scopus 로고
    • Prostaglandin E2 regulates liver versus pancreas cell-fate decisions and endodermal outgrowth
    • Nissim, S. et al. Prostaglandin E2 regulates liver versus pancreas cell-fate decisions and endodermal outgrowth. Dev. Cell 28, 423-437 (2014).
    • (2014) Dev. Cell , vol.28 , pp. 423-437
    • Nissim, S.1
  • 36
    • 80051886642 scopus 로고    scopus 로고
    • Xenografts of highly resistant leukemia recapitulate the clonal composition of the leukemogenic compartment
    • Schmitz, M. et al. Xenografts of highly resistant leukemia recapitulate the clonal composition of the leukemogenic compartment. Blood 118, 1854-1864 (2011).
    • (2011) Blood , vol.118 , pp. 1854-1864
    • Schmitz, M.1
  • 37
    • 77951171023 scopus 로고    scopus 로고
    • Induction of autophagy-dependent necroptosis is required for childhood acute lymphoblastic leukemia cells to overcome glucocorticoid resistance
    • Bonapace, L. et al. Induction of autophagy-dependent necroptosis is required for childhood acute lymphoblastic leukemia cells to overcome glucocorticoid resistance. J. Clin. Invest. 120, 1310-1323 (2010).
    • (2010) J. Clin. Invest. , vol.120 , pp. 1310-1323
    • Bonapace, L.1
  • 38
    • 84860005516 scopus 로고    scopus 로고
    • Two novel germline KRAS mutations: Expanding the molecular and clinical phenotype
    • Stark, Z. et al. Two novel germline KRAS mutations: expanding the molecular and clinical phenotype. Clin. Genet. 81, 590-594 (2012).
    • (2012) Clin. Genet. , vol.81 , pp. 590-594
    • Stark, Z.1
  • 39
    • 84917706093 scopus 로고    scopus 로고
    • Image-based RNA interference screening reveals an individual dependence of acute lymphoblastic leukemia on stromal cysteine support
    • Boutter, J. et al. Image-based RNA interference screening reveals an individual dependence of acute lymphoblastic leukemia on stromal cysteine support. Oncotarget 5, 11501-11512 (2014).
    • (2014) Oncotarget , vol.5 , pp. 11501-11512
    • Boutter, J.1
  • 40
    • 84869049935 scopus 로고    scopus 로고
    • Crosstalk between ROR1 and the Pre-B cell receptor promotes survival of t(1;19) acute lymphoblastic leukemia
    • Bicocca, V.T. et al. Crosstalk between ROR1 and the Pre-B cell receptor promotes survival of t(1;19) acute lymphoblastic leukemia. Cancer Cell 22, 656-667 (2012).
    • (2012) Cancer Cell , vol.22 , pp. 656-667
    • Bicocca, V.T.1
  • 41
    • 79958288742 scopus 로고    scopus 로고
    • Ebf1 or Pax5 haploinsuffciency synergizes with STAT5 activation to initiate acute lymphoblastic leukemia
    • Heltemes-Harris, L.M. et al. Ebf1 or Pax5 haploinsuffciency synergizes with STAT5 activation to initiate acute lymphoblastic leukemia. J. Exp. Med. 208, 1135-1149 (2011).
    • (2011) J. Exp. Med. , vol.208 , pp. 1135-1149
    • Heltemes-Harris, L.M.1
  • 42
    • 84873540049 scopus 로고    scopus 로고
    • ABT-199, a potent and selective BCL-2 inhibitor, achieves antitumor activity while sparing platelets
    • Souers, A.J. et al. ABT-199, a potent and selective BCL-2 inhibitor, achieves antitumor activity while sparing platelets. Nat. Med. 19, 202-208 (2013).
    • (2013) Nat. Med. , vol.19 , pp. 202-208
    • Souers, A.J.1
  • 43
    • 0033533822 scopus 로고    scopus 로고
    • Long-term in vivo reconstitution of T-cell development by Pax5-defcient B-cell progenitors
    • Rolink, A.G., Nutt, S.L., Melchers, F. & Busslinger, M. Long-term in vivo reconstitution of T-cell development by Pax5-defcient B-cell progenitors. Nature 401, 603-606 (1999).
    • (1999) Nature , vol.401 , pp. 603-606
    • Rolink, A.G.1    Nutt, S.L.2    Melchers, F.3    Busslinger, M.4
  • 44
    • 84894504942 scopus 로고    scopus 로고
    • Loss of Ikaros DNA-binding function confers integrin-dependent survival on pre-B cells and progression to acute lymphoblastic leukemia
    • Joshi, I. et al. Loss of Ikaros DNA-binding function confers integrin-dependent survival on pre-B cells and progression to acute lymphoblastic leukemia. Nat. Immunol. 15, 294-304 (2014).
    • (2014) Nat. Immunol. , vol.15 , pp. 294-304
    • Joshi, I.1
  • 45
    • 84891850778 scopus 로고    scopus 로고
    • An intragenic ERG deletion is a marker of an oncogenic subtype of B-cell precursor acute lymphoblastic leukemia with a favorable outcome despite frequent IKZF1 deletions
    • Clappier, E. et al. An intragenic ERG deletion is a marker of an oncogenic subtype of B-cell precursor acute lymphoblastic leukemia with a favorable outcome despite frequent IKZF1 deletions. Leukemia 28, 70-77 (2014).
    • (2014) Leukemia , vol.28 , pp. 70-77
    • Clappier, E.1
  • 46
    • 0028828269 scopus 로고
    • Down-regulation of RAG1 and RAG2 gene expression in preB cells after functional immunoglobulin heavy chain rearrangement
    • Grawunder, U. et al. Down-regulation of RAG1 and RAG2 gene expression in preB cells after functional immunoglobulin heavy chain rearrangement. Immunity 3, 601-608 (1995).
    • (1995) Immunity , vol.3 , pp. 601-608
    • Grawunder, U.1
  • 47
    • 58749097408 scopus 로고    scopus 로고
    • A subtype of childhood acute lymphoblastic leukaemia with poor treatment outcome: A genome-wide classifcation study
    • Den Boer, M.L. et al. A subtype of childhood acute lymphoblastic leukaemia with poor treatment outcome: a genome-wide classifcation study. Lancet Oncol. 10, 125-134 (2009).
    • (2009) Lancet Oncol. , vol.10 , pp. 125-134
    • Den Boer, M.L.1
  • 48
    • 84925841593 scopus 로고    scopus 로고
    • The landscape of somatic mutations in infant MLL-rearranged acute lymphoblastic leukemias
    • Andersson, A.K. et al. The landscape of somatic mutations in infant MLL-rearranged acute lymphoblastic leukemias. Nat. Genet. 47, 330-337 (2015).
    • (2015) Nat. Genet. , vol.47 , pp. 330-337
    • Andersson, A.K.1
  • 49
    • 35548974423 scopus 로고    scopus 로고
    • Identifcation of stem cells in small intestine and colon by marker gene Lgr5
    • Barker, N. et al. Identifcation of stem cells in small intestine and colon by marker gene Lgr5. Nature 449, 1003-1007 (2007).
    • (2007) Nature , vol.449 , pp. 1003-1007
    • Barker, N.1
  • 50
    • 84906536746 scopus 로고    scopus 로고
    • Leucine-rich repeat-containing G-protein-coupled Receptor 5 marks short-term hematopoietic stem and progenitor cells during mouse embryonic development
    • Liu, D. et al. Leucine-rich repeat-containing G-protein-coupled Receptor 5 marks short-term hematopoietic stem and progenitor cells during mouse embryonic development. J. Biol. Chem. 289, 23809-23816 (2014).
    • (2014) J. Biol. Chem. , vol.289 , pp. 23809-23816
    • Liu, D.1
  • 51
    • 84899527626 scopus 로고    scopus 로고
    • Reprogramming committed murine blood cells to induced hematopoietic stem cells with defned factors
    • Riddell, J. et al. Reprogramming committed murine blood cells to induced hematopoietic stem cells with defned factors. Cell 157, 549-564 (2014).
    • (2014) Cell , vol.157 , pp. 549-564
    • Riddell, J.1
  • 52
    • 84904439259 scopus 로고    scopus 로고
    • Reprogramming human endothelial cells to haematopoietic cells requires vascular induction
    • Sandler, V.M. et al. Reprogramming human endothelial cells to haematopoietic cells requires vascular induction. Nature 511, 312-318 (2014).
    • (2014) Nature , vol.511 , pp. 312-318
    • Sandler, V.M.1
  • 53
    • 0027997502 scopus 로고
    • Complete block of early B cell differentiation and altered patterning of the posterior midbrain in mice lacking Pax5/BSAP
    • Urbánek, P. , Wang, Z.Q., Fetka, I., Wagner, E.F. & Busslinger, M. Complete block of early B cell differentiation and altered patterning of the posterior midbrain in mice lacking Pax5/BSAP. Cell 79, 901-912 (1994).
    • (1994) Cell , vol.79 , pp. 901-912
    • Urbánek, P.1    Wang, Z.Q.2    Fetka, I.3    Wagner, E.F.4    Busslinger, M.5
  • 54
    • 84868570701 scopus 로고    scopus 로고
    • Biphenotypic B-lymphoid/myeloid cells expressing low levels of Pax5: Potential targets of BAL development
    • Simmons, S. et al. Biphenotypic B-lymphoid/myeloid cells expressing low levels of Pax5: potential targets of BAL development. Blood 120, 3688-3698 (2012).
    • (2012) Blood , vol.120 , pp. 3688-3698
    • Simmons, S.1
  • 55
    • 84895803000 scopus 로고    scopus 로고
    • RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia
    • Papaemmanuil, E. et al. RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia. Nat. Genet. 46, 116-125 (2014).
    • (2014) Nat. Genet. , vol.46 , pp. 116-125
    • Papaemmanuil, E.1
  • 56
    • 84919701827 scopus 로고    scopus 로고
    • ABT-199 mediated inhibition of BCL-2 as a novel therapeutic strategy in T-cell acute lymphoblastic leukemia
    • Peirs, S. et al. ABT-199 mediated inhibition of BCL-2 as a novel therapeutic strategy in T-cell acute lymphoblastic leukemia. Blood 124, 3738-3747 (2014).
    • (2014) Blood , vol.124 , pp. 3738-3747
    • Peirs, S.1
  • 57
    • 84906908026 scopus 로고    scopus 로고
    • Maturation stage of T-cell acute lymphoblastic leukemia determines BCL-2 versus BCL-XL dependence and sensitivity to ABT-199
    • Chonghaile, T.N. et al. Maturation stage of T-cell acute lymphoblastic leukemia determines BCL-2 versus BCL-XL dependence and sensitivity to ABT-199. Cancer Discov. 4, 1074-1087 (2014).
    • (2014) Cancer Discov. , vol.4 , pp. 1074-1087
    • Chonghaile, T.N.1
  • 58
    • 84892445532 scopus 로고    scopus 로고
    • Structural basis for LMO2-driven recruitment of the SCL: E47bHLH heterodimer to hematopoietic-specifc transcriptional targets
    • El Omari, K. et al. Structural basis for LMO2-driven recruitment of the SCL: E47bHLH heterodimer to hematopoietic-specifc transcriptional targets. Cell Rep. 4, 135-147 (2013).
    • (2013) Cell Rep. , vol.4 , pp. 135-147
    • El Omari, K.1
  • 59
    • 77951441599 scopus 로고    scopus 로고
    • Molecular response to treatment redefnes all prognostic factors in children and adolescents with B-cell precursor acute lymphoblastic leukemia: Results in 3184 patients of the AIEOP-BFM ALL 2000 study
    • Conter, V. et al. Molecular response to treatment redefnes all prognostic factors in children and adolescents with B-cell precursor acute lymphoblastic leukemia: results in 3184 patients of the AIEOP-BFM ALL 2000 study. Blood 115, 3206-3214 (2010).
    • (2010) Blood , vol.115 , pp. 3206-3214
    • Conter, V.1
  • 60
    • 77957361896 scopus 로고    scopus 로고
    • Detection of prognostically relevant genetic abnormalities in childhood B-cell precursor acute lymphoblastic leukaemia: Recommendations from the Biology and Diagnosis Committee of the International Berlin-Frankfurt-Munster study group
    • Harrison, C.J. et al. Detection of prognostically relevant genetic abnormalities in childhood B-cell precursor acute lymphoblastic leukaemia: recommendations from the Biology and Diagnosis Committee of the International Berlin-Frankfurt-Munster study group. Br. J. Haematol. 151, 132-142 (2010).
    • (2010) Br. J. Haematol. , vol.151 , pp. 132-142
    • Harrison, C.J.1
  • 61
    • 53049109135 scopus 로고    scopus 로고
    • Mutation of genes affecting the RAS pathway is common in childhood acute lymphoblastic leukemia
    • Case, M. et al. Mutation of genes affecting the RAS pathway is common in childhood acute lymphoblastic leukemia. Cancer Res. 68, 6803-6809 (2008).
    • (2008) Cancer Res. , vol.68 , pp. 6803-6809
    • Case, M.1
  • 62
    • 84874534042 scopus 로고    scopus 로고
    • IKZF1 deletion is an independent predictor of outcome in pediatric acute lymphoblastic leukemia treated according to the ALL-BFM 2000 protocol
    • Dörge, P. et al. IKZF1 deletion is an independent predictor of outcome in pediatric acute lymphoblastic leukemia treated according to the ALL-BFM 2000 protocol. Haematologica 98, 428-432 (2013).
    • (2013) Haematologica , vol.98 , pp. 428-432
    • Dörge, P.1
  • 64
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 65
    • 84866440781 scopus 로고    scopus 로고
    • DELLY: Structural variant discovery by integrated paired-end and split-read analysis
    • Rausch, T. et al. DELLY: structural variant discovery by integrated paired-end and split-read analysis. Bioinformatics 28, i333-i339 (2012).
    • (2012) Bioinformatics , vol.28 , pp. i333-i339
    • Rausch, T.1
  • 66
    • 81755172942 scopus 로고    scopus 로고
    • Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion
    • Xi, R. et al. Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion. Proc. Natl. Acad. Sci. USA 108, E1128-E1136 (2011).
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. E1128-E1136
    • Xi, R.1
  • 67
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim, D. et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14, R36 (2013).
    • (2013) Genome Biol. , vol.14 , pp. R36
    • Kim, D.1
  • 68
    • 79957829805 scopus 로고    scopus 로고
    • DeFuse: An algorithm for gene fusion discovery in tumor RNA-Seq data
    • McPherson, A. et al. deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data. PLOS Comput. Biol. 7, e1001138 (2011).
    • (2011) PLOS Comput. Biol. , vol.7 , pp. e1001138
    • McPherson, A.1
  • 69
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 70
    • 84874025843 scopus 로고    scopus 로고
    • Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
    • Cibulskis, K. et al. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat. Biotechnol. 31, 213-219 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 213-219
    • Cibulskis, K.1
  • 71
    • 84871757599 scopus 로고    scopus 로고
    • From next-generation sequencing alignments to accurate comparison and validation of single-nucleotide variants: The pibase software
    • Forster, M. et al. From next-generation sequencing alignments to accurate comparison and validation of single-nucleotide variants: the pibase software. Nucleic Acids Res. 41, e16 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. e16
    • Forster, M.1
  • 72
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 73
    • 84863229597 scopus 로고    scopus 로고
    • VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • Koboldt, D.C. et al. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res. 22, 568-576 (2012).
    • (2012) Genome Res. , vol.22 , pp. 568-576
    • Koboldt, D.C.1
  • 74
    • 79957932376 scopus 로고    scopus 로고
    • Dindel: Accurate indel calls from short-read data
    • Albers, C.A. et al. Dindel: accurate indel calls from short-read data. Genome Res. 21, 961-973 (2011).
    • (2011) Genome Res. , vol.21 , pp. 961-973
    • Albers, C.A.1
  • 76
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M.D., McCarthy, D.J. & Smyth, G.K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 77
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profles
    • Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profles. Proc. Natl. Acad. Sci. USA 102, 15545-15550 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1
  • 78
    • 67849133360 scopus 로고    scopus 로고
    • LitInspector: Literature and signal transduction pathway mining in PubMed abstracts
    • Frisch, M., Klocke, B., Haltmeier, M. & Frech, K. LitInspector: literature and signal transduction pathway mining in PubMed abstracts. Nucleic Acids Res. 37, W135-W140 (2009).
    • (2009) Nucleic Acids Res. , vol.37 , pp. W135-W140
    • Frisch, M.1    Klocke, B.2    Haltmeier, M.3    Frech, K.4
  • 79
    • 20144370200 scopus 로고    scopus 로고
    • OPOSSUM: Identifcation of over-represented transcription factor binding sites in co-expressed genes
    • Ho Sui, S.J. et al. oPOSSUM: identifcation of over-represented transcription factor binding sites in co-expressed genes. Nucleic Acids Res. 33, 3154-3164 (2005).
    • (2005) Nucleic Acids Res. , vol.33 , pp. 3154-3164
    • Ho Sui, S.J.1
  • 80
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
    • Wang, K., Li, M. & Hakonarson, H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 38, e164 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. e164
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 81
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium. A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073 (2010).
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 82
    • 84925283743 scopus 로고    scopus 로고
    • GrabBlur-A framework to facilitate the secure exchange of whole-exome and -genome SNV data using VCF fles
    • Stade, B., Seelow, D., Thomsen, I., Krawczak, M. & Franke, A. GrabBlur-A framework to facilitate the secure exchange of whole-exome and -genome SNV data using VCF fles. BMC Genomics 15 (suppl. 4), S8 (2014).
    • (2014) BMC Genomics , vol.15 , Issue.S8
    • Stade, B.1    Seelow, D.2    Thomsen, I.3    Krawczak, M.4    Franke, A.5
  • 83
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J.T. et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011).
    • (2011) Nat. Biotechnol. , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 84
    • 84878118960 scopus 로고    scopus 로고
    • Lineage classifcation of childhood acute lymphoblastic leukemia according to the EGIL recommendations: Results of the ALL-BFM 2000 trial
    • Ratei, R. et al. Lineage classifcation of childhood acute lymphoblastic leukemia according to the EGIL recommendations: results of the ALL-BFM 2000 trial. Klin. Padiatr. 225 (suppl. 1), S34-S39 (2013).
    • (2013) Klin. Padiatr. , vol.225 , pp. S34-S39
    • Ratei, R.1
  • 85
    • 0036374477 scopus 로고    scopus 로고
    • Guidelines for the design and statistical analysis of experiments using laboratory animals
    • Festing, M.F. & Altman, D.G. Guidelines for the design and statistical analysis of experiments using laboratory animals. ILAR J. 43, 244-258 (2002).
    • (2002) ILAR J. , vol.43 , pp. 244-258
    • Festing, M.F.1    Altman, D.G.2


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