Studying host-microbiota mutualism in Drosophila: Harnessing the power of gnotobiotic flies

Biomedical Journal

Volumn 38, Issue 4, 2015, Pages 285-293

  Ma, Dali ^a   Storelli, Gilles ^a   Mitchell, Mélanie ^a   Leulier, François ^a  

^a UNIVERSITÉ DE LYON   (France)

Author keywords

Drosophila; gnotobiology; microbiota; mutualism

Indexed keywords

ARTICLE; BEHAVIOR; COMMENSAL; CONTROLLED STUDY; DIET; DROSOPHILA; FRUIT FLY MODEL; GNOTOBIOTICS; HORMONAL REGULATION; HOST; HUMAN; INTESTINE FLORA; METABOLISM; NONHUMAN; PHYSIOLOGICAL PROCESS; SYMBIOSIS; TRANSCRIPTOMICS; ANIMAL; ANIMAL BEHAVIOR; DROSOPHILA MELANOGASTER; GASTROINTESTINAL TRACT; GERMFREE ANIMAL; GROWTH, DEVELOPMENT AND AGING; MICROFLORA; PHYSIOLOGY;

ANIMALS; BEHAVIOR, ANIMAL; DROSOPHILA; DROSOPHILA MELANOGASTER; GASTROINTESTINAL TRACT; GERM-FREE LIFE; HUMANS; MICROBIOTA; SYMBIOSIS;

EID: 84940180203     PISSN: 23194170     EISSN: None     Source Type: Journal    
DOI: 10.4103/2319-4170.158620     Document Type: Article

References (56)

1. Pasteur L. Observations related to the previous notes from M. Duclaux C. R. Acad Sci 1885;100:68.
2. Wollman E. On raising sterile flies. Contribution to the knowledge of the role of microbes in the digestive tract. Ann Inst Pasteur (Paris) 1911;25:79-88.
3. McFall-Ngai M, Hadfield MG, Bosch TC, Carey HV, Domazet-Lošo T, Douglas AE, et al. Animals in a bacterial world, a new imperative for the life sciences. Proc Natl Acad Sci USA 2013;110:3229-36.
4. Douglas AE. Symbiosis as a general principle in eukaryotic evolution. J Mol Bio 20014;426:3830-7.
5. Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature 2012;486:207-14.
6. Sommer F, Bäckhed F. The gut microbiota-Masters of host development and physiology. Nat Rev Microbiol 2013;11:227-38.
7. Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M, et al. Diversity of the human intestinal microbial flora. Science 2005;308:1635-8.
8. Clemente JC, Ursell LK, Parfrey LW, Knight R. The impact of the gut microbiota on human health: An integrative view. Cell 2012;148:1258-70.
9. Sharon G, Garg N, Debelius J, Knight R, Dorrestein PC, Mazmanian SK. Specialized metabolites from the microbiome in health and disease. Cell Metab 2014;20:719-30.
10. Kaiko GE, Stappenbeck TS. Host-microbe interactions shaping the gastrointestinal environment. Trends Immunol 2014;35:538-48.
11. Grenham S, Clarke G, Cryan JF, Dinan TG. Brain-gut-microbe communication in health and disease. Front Physiol 2011;2:94.
12. Gibson MK, Pesesky MW, Dantas G. The yin and yang of bacterial resilience in the human gut microbiota. J Mol Biol 2014;426:3866-76.
13. O'Hara AM, Shanahan F. The gut flora as a forgotten organ. EMBO Rep 2006;7:688-93.
14. Karlsson F, Tremaroli V, Nielsen J, Bäckhed F. Assessing the human gut microbiota in metabolic diseases. Diabetes 2013;62:3341-9.
15. Tremaroli V, Bäckhed F. Functional interactions between the gut microbiota and host metabolism. Nature 2012;489:242-9.
16. Irrazábal T, Belcheva A, Girardin SE, Martin A, Philpott DJ. The multifaceted role of the intestinal microbiota in colon cancer. Mol Cell 2014;54:309-20.
17. Fond G, Boukouaci W, Chevalier G, Regnault A, Eberl G, Hamdani N, et al. The "psychomicrobiotic": Targeting microbiota in major psychiatric disorders: A systematic review. Pathol Biol (Paris) 2015;63:35-42.
18. Lemaitre B, Miguel-Aliaga I. The digestive tract of Drosophila melanogaster. Annu Rev Genet 2013;47:377-404.
19. Broderick NA, Lemaitre B. Gut-associated microbes of Drosophila melanogaster. Gut Microbes 2012;3:307-21.
20. Erkosar B, Storelli G, Defaye A, Leulier F. Host-intestinal microbiota mutualism: "Learning on the fly". Cell Host Microbe 2013;13:8-14.
21. Chandler JA, Lang JM, Bhatnagar S, Eisen JA, Kopp A. Bacterial communities of diverse Drosophila species: Ecological context of a host-microbe model system. PLoS Genet 2011;7:e1002272.
22. Ridley EV, Wong AC, Westmiller S, Douglas AE. Impact of the resident microbiota on the nutritional phenotype of Drosophila melanogaster. PLoS One 2012;7:e36765.
23. Shin SC, Kim SH, You H, Kim B, Kim AC, Lee KA, et al. Drosophila microbiome modulates host developmental and metabolic homeostasis via insulin signaling. Science 2011;334:670-4.
24. Storelli G, Defaye A, Erkosar B, Hols P, Royet J, Leulier F. Lactobacillus plantarum promotes Drosophila systemic growth by modulating hormonal signals through TOR-dependent nutrient sensing. Cell Metab 2011;14:403-14.
25. Chaston JM, Newell PD, Douglas AE. Metagenome-wide association of microbial determinants of host phenotype in Drosophila melanogaster. MBio 2014;5:e01631-14.
26. Wong CN, Ng P, Douglas AE. Low-diversity bacterial community in the gut of the fruitfly Drosophila melanogaster. Environ Microbiol 2011;13:1889-900.
27. Blum JE, Fischer CN, Miles J, Handelsman J. Frequent replenishment sustains the beneficial microbiome of Drosophila melanogaster. MBio 2013;4:e00860-13.
28. Broderick NA, Buchon N, Lemaitre B. Microbiota-induced changes in Drosophila melanogaster host gene expression and gut morphology. MBio 2014;5:e01117-14.
29. Erkosar B, Leulier F. Transient adult microbiota, gut homeostasis and longevity: Novel insights from the Drosophila model. FEBS Lett 2014;588:4250-7.
30. Chouaia B, Gaiarsa S, Crotti E, Comandatore F, Degli Esposti M, Ricci I, et al. Acetic acid bacteria genomes reveal functional traits for adaptation to life in insect guts. Genome Biol Evol 2014;6:912-20.
31. Crotti E, Damiani C, Pajoro M, Gonella E, Rizzi A, Ricci I, et al. Asaia, a versatile acetic acid bacterial symbiont, capable of cross-colonizing insects of phylogenetically distant genera and orders. Environ Microbiol 2009;11:3252-64.
32. Rastall RA. Bacteria in the gut: Friends and foes and how to alter the balance. J Nutr 2004;134:2022S-6S.
33. Reuter G. The Lactobacillus and Bifidobacterium microflora of the human intestine: Composition and succession. Curr Issues Intest Microbiol 2001;2:43-53.
34. Walter J, Britton RA, Roos S. Host-microbial symbiosis in the vertebrate gastrointestinal tract and the Lactobacillus reuteri paradigm. Proc Natl Acad Sci USA 2011;108 Suppl 1:4645-52.
35. Bakula M. The persistence of a microbial flora during postembryogenesis of Drosophila melanogaster. J Invertebr Pathol 1969;14:365-74.
36. Begg M, SANG JH. A method for collecting and sterilizing large numbers of Drosophila eggs. Science 1950;112:11-2.
37. Grönke S, Clarke DF, Broughton S, Andrews TD, Partridge L. Molecular evolution and functional characterization of Drosophila insulin-like peptides. PLoS Genet 2010;6:e1000857.
38. Hamilton PT, Perlman SJ. Host defense via symbiosis in Drosophila. PLoS Pathog 2013;9:e1003808.
39. Ikeya T, Broughton S, Alic N, Grandison R, Partridge L. The endosymbiont Wolbachia increases insulin/IGF-like signalling in Drosophila. Proc Biol Sci 2009;276:3799-807.
40. Ringo J, Sharon G, Segal D. Bacteria-induced sexual isolation in Drosophila. Fly (Austin) 2011;5:310-5.
41. Ridley EV, Wong AC, Douglas AE. Microbe-dependent and nonspecific effects of procedures to eliminate the resident microbiota from Drosophila melanogaster. Appl Environ Microbiol 2013;79:3209-14.
42. Wong AC, Dobson AJ, Douglas AE. Gut microbiota dictates the metabolic response of Drosophila to diet. J Exp Biol 2014;217:1894-901.
43. Natarajan N, Pluznick JL. From microbe to man: The role of microbial short chain fatty acid metabolites in host cell biology. Am J Physiol Cell Physiol 2014;307:C979-85.
44. Fridmann-Sirkis Y, Stern S, Elgart M, Galili M, Zeisel A, Shental N, et al. Delayed development induced by toxicity to the host can be inherited by a bacterial-dependent, transgenerational effect. Front Genet 2014;5:27.
45. Danielsen ET, Moeller ME, Rewitz KF. Nutrient signaling and developmental timing of maturation. Curr Top Dev Biol 2013;105:37-67.
46. Hietakangas V, Cohen SM. Regulation of tissue growth through nutrient sensing. Annu Rev Genet 2009;43:389-410.
47. Newell PD, Douglas AE. Interspecies interactions determine the impact of the gut microbiota on nutrient allocation in Drosophila melanogaster. Appl Environ Microbiol 2014;80:788-96.
48. Erkosar B, Defaye A, Bozonnet N, Puthier D, Royet J, Leulier F. Drosophila microbiota modulates host metabolic gene expression via IMD/NF-B signaling. PLoS One 2014;9:e94729.
49. Guo L, Karpac J, Tran SL, Jasper H. PGRP-SC2 promotes gut immune homeostasis to limit commensal dysbiosis and extend lifespan. Cell 2014;156:109-22.
50. Buchon N, Broderick NA, Poidevin M, Pradervand S, Lemaitre B. Drosophila intestinal response to bacterial infection: Activation of host defense and stem cell proliferation. Cell Host Microbe 2009;5:200-11.
51. Montiel-Castro AJ, González-Cervantes RM, Bravo-Ruiseco G, Pacheco-López G. The microbiota-gut-brain axis: Neurobehavioral correlates, health and sociality. Front Integr Neurosci 2013;7:70.
52. Cryan JF, Dinan TG. Mind-altering microorganisms: The impact of the gut microbiota on brain and behaviour. Nat Rev Neurosci 2012;13:701-12.
53. Stilling RM, Dinan TG, Cryan JF. Microbial genes, brain and behaviour-Epigenetic regulation of the gut-brain axis. Genes Brain Behav 2014;13:69-86.
54. Sharon G, Segal D, Ringo JM, Hefetz A, Zilber-Rosenberg I, Rosenberg E. Commensal bacteria play a role in mating preference of Drosophila melanogaster. Proc Natl Acad Sci USA 2010;107:20051-6.
55. Venu I, Durisko Z, Xu J, Dukas R. Social attraction mediated by fruit flies' microbiome. J Exp Biol 2014;217:1346-52.
56. Durisko Z, Dukas R. Attraction to and learning from social cues in fruitfly larvae. Proc Biol Sci 2013;280:20131398.