Frequent replenishment sustains the beneficial microbiome of Drosophila melanogaster

mBio

Volumn 4, Issue 6, 2013, Pages

  Blum, Jessamina E ^a,c   Fischer, Caleb N ^a   Miles, Jessica ^a,b   Handelsman, Jo ^a  

^a YALE UNIVERSITY   (United States)

^b YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

ACETOBACTER; ARTICLE; COMMENSAL; CONTROLLED STUDY; DROSOPHILA MELANOGASTER; FEMALE; INFECTION RESISTANCE; INGESTION; INTESTINE FLORA; LACTOBACILLUS; LACTOBACILLUS PLANTARUM; MALE; MICROBIAL COMMUNITY; MICROBIOME; NONHUMAN; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; PYROSEQUENCING; SERRATIA MARCESCENS;

ANIMALS; BIOTA; DROSOPHILA MELANOGASTER; FEEDING BEHAVIOR; GASTROINTESTINAL TRACT; MICROBIOTA;

EID: 84891592625     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.00860-13     Document Type: Article

References (37)

1. Morgan XC, Segata N, Huttenhower C. 2013. Biodiversity and functional genomics in the human microbiome. Trends Genet. 29:51-58.
2. Microbiome, Human Project Consortium. 2012. Structure, function and diversity of the healthy human microbiome. Nature 486:207-214.
3. Venema K. 2010. Role of gut microbiome in the control of energy and carbohydrate metabolism. Curr. Opin. Clin. Nutr. Metab. Care 13: 432-438.
4. Hooper LV, Midtvedt T, Gordon JI. 2002. How host-microbial interactions shape the nutrient environment of the mammalian intestine. Annu. Rev. Nutr. 22:283-307.
5. Ivanov II, Atarashi K, Manel N, Brodie EL, Shima T, Karaoz U, Wei D, Goldfarb KC, Santee CA, Lynch SV, Tanoue T, Imaoka A, Itoh K, Takeda K, Umesaki Y, Honda K, Littman DR. 2009. Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell 139: 485-498.
6. Hooper LV, Gordon JI. 2001. Commensal host-bacterial relationships in the gut. Science 292:1115-1118.
7. Brown CT, Davis-Richardson AG, Giongo A, Gano KA, Crabb DB, Mukherjee N, Casella G, Drew JC, Ilonen J, Knip M, Hyöty H, Veijola R, Simell T, Simell O, Neu J, Wasserfall CH, Schatz D, Atkinson MA, Triplett EW. 2011. Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes. PLoS One 6:e25792. doi:10.1371/journal.pone.0025792.
8. Larsen N, Vogensen FK, van den Berg FW, Nielsen DS, Andreasen AS, vPedersen BK, Al-Soud WA, Sørensen SJ, Hansen LH, Jakobsen M. 2010. November/December 2013 Volume 4 Issue 6 e00860-13 Gut microbiome in human adults with type 2 diabetes differs from nondiabetic adults. PLoS One 5:e9085. doi:10.1371/journal.pone.0009085.
9. Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. 2006. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444:1027-1031.
10. Ridaura VK, Faith JJ, Rey FE, Cheng J, Duncan AE, Kau AL, Griffin NW, Lombard V, Henrissat B, Bain JR, Muehlbauer MJ, Ilkayeva O, Semenkovich CF, Funai K, Hayashi DK, Lyle BJ, Martini MC, Ursell LK, Clemente JC, Van Treuren W, Walters WA, Knight R, Newgard CB, Heath AC, Gordon JI. 2013. Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science 341:1241214. doi:10.1126/science.1241214.
11. Fei N, Zhao L. 2013. An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice. ISME J. 7:880-884.
12. Rowland IR. 2009. The role of the gastrointestinal microbiota in colorec-tal cancer. Curr. Pharm. Des. 15:1524-1527.
13. Maes M, Kubera M, Leunis JC, Berk M. 2012. Increased IgA and IgM responses against gut commensals in chronic depression: further evidence for increased bacterial translocation or leaky gut. J. Affect. Disord. 141: 55-62.
14. Wong CN, Ng P, Douglas AE. 2011. Low diversity bacterial community in the gut of the fruitfly Drosophila melanogaster. Environ. Microbiol. 13:1889-1900.
15. Ren C, Webster P, Finkel SE, Tower J. 2007. Increased internal and external bacterial load during Drosophila aging without life-span tradeoff. Cell Metab. 6:144-152.
16. Dale C, Moran NA. 2006. Molecular interactions between bacterial symbionts and their hosts. Cell 126:453-465.
17. McFall-Ngai MJ, Ruby EG. 1991. Symbiont recognition and subsequent morphogenesis as early events in an animal-bacterial mutualism. Science 254:1491-1494.
18. Macfarlane GT, Blackett KL, Nakayama T, Steed H, Macfarlane S. 2009. The gut microbiota in inflammatory bowel disease. Curr. Pharm. Des. 15:1528-1536.
19. Cognigni P, Bailey AP, Miguel-Aliaga I. 2011. Enteric neurons and systemic signals couple nutritional and reproductive status with intestinal homeostasis. Cell Metab. 13:92-104.
20. Wong AC, Chaston JM, Douglas AE. 2013. The inconstant gut micro-biota of Drosophila species revealed by 16S rRNA gene analysis. ISME J. 7:1922-1932.
21. Stensmyr MC, Dweck HK, Farhan A, Ibba I, Strutz A, Mukunda L, Linz J, Grabe V, Steck K, Lavista-Llanos S, Wicher D, Sachse S, Knaden M, Becher PG, Seki Y, Hansson BS. 2012. A conserved dedicated olfactory circuit for detecting harmful microbes in Drosophila. Cell 151:1345-1357.
22. Storelli G, Defaye A, Erkosar B, Hols P, Royet J, Leulier F. 2011. Lactobacillus plantarum promotes Drosophila systemic growth by modulating hormonal signals through TOR-dependent nutrient sensing. Cell Metab. 14:403-414.
23. Zhang MM, Poulsen M, Currie CR. 2007. Symbiont recognition of mutualistic bacteria by Acromyrmex leaf-cutting ants. ISME J. 1:313-320.
24. Stallforth P, Brock DA, Cantley AM, Tian X, Queller DC, Strassmann JE, Clardy J. 2013. A bacterial symbiont is converted from an inedible producer of beneficial molecules into food by a single mutation in the gacA gene. Proc. Natl. Acad. Sci. U. S. A. 110:14528-14533. DOI:10.1073/pnas.1308199110. PubMed.
25. Szajewska H, Ruszczynski M, Radzikowski A. 2006. Probiotics in the prevention of antibiotic-associated diarrhea in children: a meta-analysis of randomized controlled trials. J. Pediatr. 149:367-372.
26. Pelletier X, Laure-Boussuge S, Donazzolo Y. 2001. Hydrogen excretion upon ingestion of dairy products in lactose-intolerant male subjects: importance of the live flora. Eur. J. Clin. Nutr. 55:509-512.
27. Gawronska A, Dziechciarz P, Horvath A, Szajewska H. 2007. A randomized double-blind placebo-controlled trial of Lactobacillus GG for abdominal pain disorders in children. Aliment. Pharmacol. Ther. 25:177-184.
28. Rijkers GT, Bengmark S, Enck P, Haller D, Herz U, Kalliomaki M, Kudo S, Lenoir-Wijnkoop I, Mercenier A, Myllyluoma E, Rabot S, Rafter J, Szajewska H, Watzl B, Wells J, Wolvers D, Antoine JM. 2010. Guidance for substantiating the evidence for beneficial effects of probiotics: current status and recommendations for future research. J. Nutr. 140:671S-676S. doi:10.3945/jn.109.113779.
29. Boyle RJ, Bath-Hextall FJ, Leonardi-Bee J, Murrell DF, Tang ML. 2009. Probiotics for the treatment of eczema: a systematic review. Clin. Exp. Allergy 39:1117-1127.
30. Doherty GA, Bennett GC, Cheifetz AS, Moss AC. 2010. Meta-analysis: targeting the intestinal microbiome in prophylaxis for post-operative Crohn's disease. Aliment. Pharmacol. Ther. 31:802-809.
31. Corby-Harris V, Pontaroli AC, Shimkets LJ, Bennetzen JL, Habel KE, Promislow DE. 2007. Geographical distribution and diversity of bacteria associated with natural populations of Drosophila melanogaster. Appl. Environ. Microbiol. 73:3470-3479.
32. Chandler JA, Lang JM, Bhatnagar S, Eisen JA, Kopp A. 2011. Bacterial communities of diverse Drosophila species: ecological context of a host-microbe model system. PLoS Genet. 7(9):e1002272. doi:10.1371/ journal.pgen.1002272.
33. Cox CR, Gilmore MS. 2007. Native microbial colonization of Drosophila melanogaster and its use as a model of Enterococcus faecalis pathogenesis. Infect. Immun. 75:1565-1576.
34. Ryu JH, Kim SH, Lee HY, Bai JY, Nam YD, Bae JW, Lee DG, Shin SC, Ha EM, Lee WJ. 2008. Innate immune homeostasis by the homeobox gene Caudal and commensal-gut mutualism in Drosophila. Science 319: 777-782.
35. Bakula M. 1969. The persistence of a microbial flora during postembryogenesis of Drosophila melanogaster. J. Invertebr. Pathol. 14: 365-374.
36. Staubach F, Baines JF, Kuenzel S, Bik EM, Petrov DA. 2013. Host species and environmental effects on bacterial communities associated with Drosophila in the laboratory and in the natural Environment. PLoS One 8:e70749. doi:10.1371/journal.pone.0070749.
37. McNulty NP, Yatsunenko T, Hsiao A, Faith JJ, Muegge BD, Goodman AL, Henrissat B, Oozeer R, Cools-Portier S, Gobert G, Chervaux C, Knights D, Lozupone CA, Knight R, Duncan AE, Bain JR, Muehlbauer MJ, Newgard CB, Heath AC, Gordon JI. 2011. The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Sci. Transl. Med. 3:106ra106. doi:10.1126/ scitranslmed.3002701.