Recent advancements in structured-illumination microscopy toward live-cell imaging

Microscopy

Volumn 64, Issue 4, 2015, Pages 237-249

  Hirano, Yasuhiro ^a   Matsuda, Atsushi ^a,b   Hiraoka, Yasushi ^a,b  

^a OSAKA UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF INFORMATION AND COMMUNICATIONS TECHNOLOGY   (Japan)

Author keywords

Live cell imaging; Low illumination intensity; Structured illumination microscopy; Super resolution; Temporal resolution

Indexed keywords

CELLS; CYTOLOGY; DIFFRACTION; FLUORESCENCE MICROSCOPY;

ILLUMINATION INTENSITY; LIVE-CELL IMAGING; LOW ILLUMINATION INTENSITY; LOW ILLUMINATIONS; SPATIAL RESOLUTION; STRUCTURED ILLUMINATION; STRUCTURED-ILLUMINATION MICROSCOPY; SUPER-RESOLUTION MICROSCOPY; SUPERRESOLUTION; TEMPORAL RESOLUTION;

IMAGE RESOLUTION;

FLUORESCENCE MICROSCOPY; ILLUMINATION; IMAGE PROCESSING; PROCEDURES; THREE DIMENSIONAL IMAGING;

IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; LIGHTING; MICROSCOPY, FLUORESCENCE;

EID: 84939789876     PISSN: 20505698     EISSN: 20505701     Source Type: Journal    
DOI: 10.1093/jmicro/dfv034     Document Type: Review

References (58)

1. Abbe E (1873) Beiträge zur Theorie des Mikroskops und der mikroskopischenWahrnehmung. Arkiv. Mikroskop. Anat. 9: 413–468.
2. Sandison D R, Piston D W, Williams R M, Webb W W (1995) Quantitative comparison of background rejection, signal-to-noise ratio, and resolution in confocal and full-field laser scanning microscopes. Appl. Opt. 34: 3576–3588.
3. Denk W, Strickler J H, Webb W W (1990) Two-photon laser scanning fluorescence microscopy. Science 248: 73–76.
4. Hell S W, Wichmann J (1994) Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy. Opt. Lett. 19: 780–782.
5. Klar T A, Hell S W (1999) Subdiffraction resolution in far-field fluorescence microscopy. Opt. Lett. 24: 954–956.
6. Rust M J, Bates M, Zhuang X (2006) Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat. Methods 3: 793–795.
7. Betzig E, Patterson G H, Sougrat R, Lindwasser OW, Olenych S, Bonifacino J S, Davidson M W, Lippincott-Schwartz J, Hess H F (2006) Imaging intracellular fluorescent proteins at nanometer resolution. Science 313: 1642–1645.
8. Dertinger T, Colyer R, Iyer G, Weiss S, Enderlein J (2009) Fast, background-free, 3D super-resolution optical fluctuation imaging (SOFI). Proc. Natl Acad. Sci. USA 106: 22287–22292.
9. Fujita K, Kobayashi M, Kawano S, Yamanaka M, Kawata S (2007) High-resolution confocal microscopy by saturated excitation of fluorescence. Phys. Rev. Lett. 99: 228105.
10. Yamanaka M, Saito K, Smith N I, Kawata S, Nagai T, Fujita K (2014) Saturated excitation of fluorescent proteins for subdiffraction-limited imaging of living cells in three dimensions. Interface Focus 3: 20130007.
11. Gustafsson MG (1999) Extended resolution fluorescence microscopy. Curr. Opin. Struct. Biol. 9: 627–634.
12. Gustafsson M G (2000) Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy. J. Microsc. 198: 82–87.
13. Gustafsson MG, Shao L, Carlton PM, Wang C J, Golubovskaya I N, Cande W Z, Agard D A, Sedat J W (2008) Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination. Biophys. J. 94: 4957–4970.
14. Schermelleh L, Heintzmann R, Leonhardt H (2010) A guide to super-resolution fluorescence microscopy. J. Cell Biol. 190: 165–175.
15. Cox S (2015) Super-resolution imaging in live cells. Dev. Biol. 401: 175–181.
16. Schermelleh L, Carlton P M, Haase S, Shao L, Winoto L, Kner P, Burke B, Cardoso M C, Agard D A, Gustafsson M G, Leonhardt H, Sedat J W (2008) Subdiffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy. Science 320: 1332–1336.
17. Strauss M P, Liew A T, Turnbull L, Whitchurch C B, Monahan L G, Harry E J (2012) 3D-SIM super resolution microscopy reveals a bead-like arrangement for FtsZ and the division machinery: implications for triggering cytokinesis. PLoS Biol. 10: e1001389.
18. Turnbull L, Strauss MP, Liew A T, Monahan L G, Whitchurch C B, Harry E J (2014) Super-resolution imaging of the cytokinetic Z ring in live bacteria using fast 3D-structured illumination microscopy (f3D-SIM). J. Vis. Exp. 29: e51469.
19. Wicker K, Mandula O, Best G, Fiolka R, Heintzmann R (2013) Phase optimisation for structured illumination microscopy. Optics Express 21: 2032–2049.
20. Wei F, Lu D, Shen H, Wan W, Ponsetto J L, Huang E, Liu Z (2014) Wide field super-resolution surface imaging through plasmonic structured illumination microscopy. Nano Lett. 14: 4634–4639.
21. Ponsetto J L, Wei F F, Liu ZW (2014) Localized plasmon assisted structured illumination microscopy for wide-field high-speed dispersion-independent super resolution imaging. Nanoscale 6: 5807–5812.
22. Park J H, Lee S W, Lee E S, Lee J Y (2014) A method for superresolved CARS microscopy with structured illumination in two dimensions. Optics Express 22: 9854–9870.
23. Kner P, Chhun B B, Griffis E R, Winoto L, Gustafsson M G (2009) Super-resolution video microscopy of live cells by structured illumination. Nat. Methods 6: 339–342.
24. Shao L, Kner P, Rego E H, Gustafsson M G (2011) Superresolution 3D microscopy of live whole cells using structured illumination. Nat. Methods 8: 1044–1046.
25. Gustafsson M G (2005) Nonlinear structured-illumination microscopy: wide-field fluorescence imaging with theoretically unlimited resolution. Proc. Natl Acad. Sci. USA 102: 13081–13086.
26. Rego E H, Shao L, Macklin J J, Winoto L, Johansson G A, Kamps-Hughes N, Davidson MW, Gustafsson MG (2012) Nonlinear structured-illumination microscopy with a photoswitchable protein reveals cellular structures at 50-nm resolution. Proc. Natl Acad. Sci. USA 109: E135–E143.
27. Müller C B, Enderlein J (2010) Image scanning microscopy. Phys. Rev. Lett. 104: 198101.
28. York A G, Parekh S H, Dalle Nogare D, Fischer R S, Temprine K, Mione M, Chitnis A B, Combs C A, Shroff H (2012) Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy. Nat. Methods 9: 749–754.
29. Schulz O, Pieper C, Clever M, Pfaff J, Ruhlandt A, Kehlenbach R H, Wouters F S, Grosshans J, Bunt G, Enderlein J (2013) Resolution doubling in fluorescence microscopy with confocal spinning-disk image scanningmicroscopy. Proc.Natl Acad. Sci.USA 110: 21000–21005.
30. York A G, Chandris P, Nogare D D, Head J, Wawrzusin P, Fischer R S, Chitnis A, Shroff H (2013) Instant super-resolution imaging in live cells and embryos via analog image processing. Nat. Methods 10: 1122–1126.
31. Gao L, Shao L, Higgins C D, Poulton J S, Peifer M, Davidson M W, Wu X, Goldstein B, Betzig E (2012) Noninvasive imaging beyond the diffraction limit of 3D dynamics in thickly fluorescent specimens. Cell 151: 1370–1385.
32. Chen B C, Legant W R, Wang K, Shao L, Milkie D E, Davidson M W, Janetopoulos C, Wu X S, Hammer J A, Liu Z, English B P, Mimori-Kiyosue Y, Romero D P, Ritter A T, Lippincott-Schwartz J, Fritz-Laylin L, Mullins R D, Mitchell D M, Bembenek J N, Reymann A C, Bohme R, Grill SW, Wang J T, Seydoux G, Tulu U S, Kiehart D P, Betzig E (2014) Lattice lightsheet microscopy: imaging molecules to embryos at high spatiotemporal resolution. Science 346: 1257998.
33. Ando R, Mizuno H, Miyawaki A (2004) Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting. Science 306: 1370–1373.
34. Habuchi S, Ando R, Dedecker P, Verheijen W, Mizuno H, Miyawaki A, Hofkens J (2005) Reversible single-molecule photoswitching in the GFP-like fluorescent protein Dronpa. Proc. Natl Acad. Sci. USA 102: 9511–9516.
35. Habuchi S, Dedecker P, Hotta J, Flors C, Ando R, Mizuno H, Miyawaki A, Hofkens J (2006) Photo-induced protonation/ deprotonation in the GFP-like fluorescent protein Dronpa: mechanism responsible for the reversible photoswitching. Photochem. Photobiol. Sci. 5: 567–576.
36. Schwentker M A, Bock H, Hofmann M, Jakobs S, Bewersdorf J, Eggeling C, Hell S W (2007) Wide-field subdiffraction RESOLFT microscopy using fluorescent protein photoswitching. Microsc. Res. Tech. 70: 269–280.
37. Shao L, Isaac B, Uzawa S, Agard D A, Sedat J W, Gustafsson M G (2008) I5S: wide-field light microscopy with 100-nm-scale resolution in three dimensions. Biophys. J. 94: 4971–4983.
38. Ingaramo M, York A G, Wawrzusin P, Milberg O, Hong A, Weigert R, Shroff H, Patterson G H (2014) Two-photon excitation improves multifocal structured illumination microscopy in thick scattering tissue. Proc. Natl Acad. Sci. USA 111: 5254–5259.
39. Winter P W, York A G, Nogare D D, Ingaramo M, Christensen R, Chitnis A, Patterson G H, Shroff H (2014) Twophoton instant structured illumination microscopy improves the depth penetration of super-resolution imaging in thick scattering samples. Optica 1: 181–191.
40. Huisken J, Swoger J, Del Bene F, Wittbrodt J, Stelzer E H (2004) Optical sectioning deep inside live embryos by selective plane illumination microscopy. Science 305: 1007–1009.
41. Keller P J, Schmidt A D, Wittbrodt J, Stelzer E H (2008) Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy. Science 322: 1065–1069.
42. Gao L, Shao L, Chen B C, Betzig E (2014) 3D live fluorescence imaging of cellular dynamics using Bessel beam plane illumination microscopy. Nat. Protoc. 9: 1083–1101.
43. Lin Y, Seka W, Eberly J H, Huang H, Brown D L (1992) Experimental investigation of Bessel beam characteristics. Appl. Opt. 31: 2708–2713.
44. Planchon T A, Gao L, Milkie D E, Davidson MW, Galbraith J A, Galbraith C G, Betzig E (2011) Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination. Nat. Methods 8: 417–423.
45. Arigovindan M, Sedat J W, Agard D A (2012) Effect of depth dependent spherical aberrations in 3D structured illumination microscopy. Optics Express 20: 6527–6541.
46. Babcock H W (1990) Adaptive optics revisited. Science 249: 253–257.
47. Milkie D E, Betzig E, Ji N (2011) Pupil-segmentation-based adaptive optical microscopy with full-pupil illumination. Opt. Lett. 36: 4206–4208.
48. Ji N, Milkie D E, Betzig E (2010) Adaptive optics via pupil segmentation for high-resolution imaging in biological tissues. Nat. Methods 7: 141–147.
49. Wang K, Milkie D E, Saxena A, Engerer P, Misgeld T, Bronner M E, Mumm J, Betzig E (2014) Rapid adaptive optical recovery of optimal resolution over large volumes. Nat.Methods 11: 625–628.
50. Boulanger J, Kervrann C, Bouthemy P, Elbau P, Sibarita J B, Salamero J (2010) Patch-based nonlocal functional for denoising fluorescence microscopy image sequences. IEEE Trans. Med. Imaging 29: 442–454.
51. Arigovindan M, Fung J C, Elnatan D, Mennella V, Chan Y H, Pollard M, Branlund E, Sedat J W, Agard D A (2013) Highresolution restoration of 3D structures from widefield images with extreme low signal-to-noise-ratio. Proc. Natl Acad. Sci. USA 110: 17344–17349.
52. Matsuda A, Shao L, Boulanger J, Kervrann C, Carlton P M, Kner P, Agard D, Sedat J W (2010) Condensed mitotic chromosome structure at nanometer resolution using PALM and EGFPhistones. PLoS One 5: e12768.
53. Carlton P M, Boulanger J, Kervrann C, Sibarita J B, Salamero J, Gordon-Messer S, Bressan D, Haber J E, Haase S, Shao L, Winoto L, Matsuda A, Kner P, Uzawa S, Gustafsson M, Kam Z, Agard D A, Sedat J W (2010) Fast live simultaneous multiwavelength four-dimensional optical microscopy. Proc. Natl Acad. Sci. USA 107: 16016–16022.
54. Chu K, McMillan P J, Smith Z J, Yin J, Atkins J, Goodwin P, Wachsmann-Hogiu S, Lane S (2014) Image reconstruction for structured-illumination microscopy with low signal level. Optics Express 22: 8687–8702.
55. Goldstein T, Osher S (2009) The Split Bregman method for L1-regularized problems. SIAM J. Imaging Sci. 2: 323–343.
56. Setzer S, Steidl G, Teuber T (2010) Deblurring Poissonian images by split Bregman techniques. J. Vis. Commun. Image R 21: 193–199.
57. Wang Y L, Yang J F, Yin WT, Zhang Y (2008) A new alternating minimization algorithm for total variation image reconstruction. SIAM J. Imaging Sci. 1: 248–272.
58. Mudry E, Belkebir K, Girard J, Savatier J, Le Moal E, Nicoletti C, Allain M, Sentenac A (2012) Structured illumination microscopy using unknown speckle patterns. Nat. Photon. 6: 312–315.