메뉴 건너뛰기




Volumn 112, Issue 33, 2015, Pages 10177-10184

Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes

Author keywords

Chloroplast; Endosymbiosis; Mitochondrial genome; Mitochondrion; Plastid genome

Indexed keywords

CHROMOSOME NUMBER; CONVERGENT EVOLUTION; DNA FRAGMENTATION; DNA REPAIR; GENE MUTATION; GENE NUMBER; GENE STRUCTURE; GENETIC CODE; GENETIC DRIFT; GENOME SIZE; HORIZONTAL GENE TRANSFER; HUMAN; INTRON; MITOCHONDRIAL GENOME; MOLECULAR EVOLUTION; NATURAL SELECTION; NONHUMAN; OXIDATIVE PHOSPHORYLATION; PLASTID GENOME; PRIORITY JOURNAL; REVIEW; RNA EDITING; ANIMAL; CELL LINEAGE; CELL NUCLEUS; CHROMOSOME; DNA SEQUENCE; EVOLUTION; GENETICS; GENOME; GENOMICS; MUTATION; PLANT; PLASTID; POPULATION GENETICS; RNA PROCESSING; SYMBIOSIS; ULTRASTRUCTURE;

EID: 84939650665     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1422049112     Document Type: Review
Times cited : (306)

References (120)
  • 3
    • 77349112000 scopus 로고    scopus 로고
    • The endosymbiotic origin, diversification and fate of plastids
    • Keeling PJ (2010) The endosymbiotic origin, diversification and fate of plastids. Philos Trans R Soc Lond B Biol Sci 365(1541):729-748.
    • (2010) Philos Trans R Soc Lond B Biol Sci , vol.365 , Issue.1541 , pp. 729-748
    • Keeling, P.J.1
  • 4
    • 84898715307 scopus 로고    scopus 로고
    • A plastid without a genome: Evidence from the non-photosynthetic green algal genus Polytomella
    • Smith DR, Lee RW (2014) A plastid without a genome: Evidence from the non-photosynthetic green algal genus Polytomella. Plant Physiol 164(4):1812-1819.
    • (2014) Plant Physiol , vol.164 , Issue.4 , pp. 1812-1819
    • Smith, D.R.1    Lee, R.W.2
  • 5
    • 79953234083 scopus 로고    scopus 로고
    • Chloroplast genomes of photosynthetic eukaryotes
    • Green BR (2011) Chloroplast genomes of photosynthetic eukaryotes. Plant J 66(1): 34-44.
    • (2011) Plant J , vol.66 , Issue.1 , pp. 34-44
    • Green, B.R.1
  • 6
    • 66449102561 scopus 로고    scopus 로고
    • DNA transfer from organelles to the nucleus: The idiosyncratic genetics of endosymbiosis
    • Kleine T, Maier UG, Leister D (2009) DNA transfer from organelles to the nucleus: the idiosyncratic genetics of endosymbiosis. Annu Rev Plant Biol 60:115-138.
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 115-138
    • Kleine, T.1    Maier, U.G.2    Leister, D.3
  • 7
    • 0344861878 scopus 로고    scopus 로고
    • Mitochondrial genomes: Anything goes
    • Burger G, Gray MW, Lang BF (2003) Mitochondrial genomes: Anything goes. Trends Genet 19(12):709-716.
    • (2003) Trends Genet , vol.19 , Issue.12 , pp. 709-716
    • Burger, G.1    Gray, M.W.2    Lang, B.F.3
  • 8
    • 43049169011 scopus 로고    scopus 로고
    • The remarkable chloroplast genome of dinoflagellates
    • Howe CJ, Nisbet RER, Barbrook AC (2008) The remarkable chloroplast genome of dinoflagellates. J Exp Bot 59(5):1035-1045.
    • (2008) J Exp Bot , vol.59 , Issue.5 , pp. 1035-1045
    • Howe, C.J.1    Nisbet, R.E.R.2    Barbrook, A.C.3
  • 9
    • 0032762209 scopus 로고    scopus 로고
    • Evolution of organellar genomes
    • Gray MW (1999) Evolution of organellar genomes. Curr Opin Genet Dev 9(6): 678-687.
    • (1999) Curr Opin Genet Dev , vol.9 , Issue.6 , pp. 678-687
    • Gray, M.W.1
  • 11
    • 0022294484 scopus 로고
    • Comparative organization of chloroplast genomes
    • Palmer JD (1985) Comparative organization of chloroplast genomes. Annu Rev Genet 19:325-354.
    • (1985) Annu Rev Genet , vol.19 , pp. 325-354
    • Palmer, J.D.1
  • 13
    • 84863111501 scopus 로고    scopus 로고
    • Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene
    • Sloan DB, Alverson AJ, Wu M, Palmer JD, Taylor DR (2012) Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene. Genome Biol Evol 4(3):294-306.
    • (2012) Genome Biol Evol , vol.4 , Issue.3 , pp. 294-306
    • Sloan, D.B.1    Alverson, A.J.2    Wu, M.3    Palmer, J.D.4    Taylor, D.R.5
  • 14
    • 0029758985 scopus 로고    scopus 로고
    • RNA editing in plant organelles: A fertile field
    • Gray MW (1996) RNA editing in plant organelles: A fertile field. Proc Natl Acad Sci USA 93(16):8157-8159.
    • (1996) Proc Natl Acad Sci USA , vol.93 , Issue.16 , pp. 8157-8159
    • Gray, M.W.1
  • 15
    • 77954693072 scopus 로고    scopus 로고
    • Recombination and the maintenance of plant organelle genome stability
    • Maréchal A, Brisson N (2010) Recombination and the maintenance of plant organelle genome stability. New Phytol 186(2):299-317.
    • (2010) New Phytol , vol.186 , Issue.2 , pp. 299-317
    • Maréchal, A.1    Brisson, N.2
  • 16
    • 0029610067 scopus 로고
    • Uniparental inheritance of mitochondrial and chloroplast genes: Mechanisms and evolution
    • Birky CW, Jr (1995) Uniparental inheritance of mitochondrial and chloroplast genes: Mechanisms and evolution. Proc Natl Acad Sci USA 92(25):11331-11338.
    • (1995) Proc Natl Acad Sci USA , vol.92 , Issue.25 , pp. 11331-11338
    • Birky, C.W.1
  • 17
    • 0019423856 scopus 로고
    • Sequence and organization of the human mitochondrial genome
    • Anderson S, et al. (1981) Sequence and organization of the human mitochondrial genome. Nature 290(5806):457-465.
    • (1981) Nature , vol.290 , Issue.5806 , pp. 457-465
    • Anderson, S.1
  • 19
    • 0022546644 scopus 로고
    • Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA
    • Ohyama K, et al. (1986) Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322(6079): 572-574.
    • (1986) Nature , vol.322 , Issue.6079 , pp. 572-574
    • Ohyama, K.1
  • 20
    • 84968989005 scopus 로고
    • The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and expression
    • Shinozaki K, et al. (1986) The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and expression. EMBO J 5(9):2043-2049.
    • (1986) EMBO J , vol.5 , Issue.9 , pp. 2043-2049
    • Shinozaki, K.1
  • 21
    • 79957927000 scopus 로고    scopus 로고
    • The evolution of the plastid chromosome in land plants: Gene content, gene order, gene function
    • Wicke S, Schneeweiss GM, dePamphilis CW, Müller KF, Quandt D (2011) The evolution of the plastid chromosome in land plants: Gene content, gene order, gene function. Plant Mol Biol 76(3-5):273-297.
    • (2011) Plant Mol Biol , vol.76 , Issue.3-5 , pp. 273-297
    • Wicke, S.1    Schneeweiss, G.M.2    DePamphilis, C.W.3    Müller, K.F.4    Quandt, D.5
  • 22
    • 0344876053 scopus 로고    scopus 로고
    • Mitochondrial genome diversity: Evolution of the molecular architecture and replication strategy
    • Nosek J, Tomáska L (2003) Mitochondrial genome diversity: Evolution of the molecular architecture and replication strategy. Curr Genet 44(2):73-84.
    • (2003) Curr Genet , vol.44 , Issue.2 , pp. 73-84
    • Nosek, J.1    Tomáska, L.2
  • 23
    • 34248578392 scopus 로고    scopus 로고
    • The size and form of chromosomes are constant in the nucleus, but highly variable in bacteria, mitochondria and chloroplasts
    • Bendich AJ (2007) The size and form of chromosomes are constant in the nucleus, but highly variable in bacteria, mitochondria and chloroplasts. BioEssays 29(5): 474-483.
    • (2007) BioEssays , vol.29 , Issue.5 , pp. 474-483
    • Bendich, A.J.1
  • 24
    • 80052007901 scopus 로고    scopus 로고
    • The human mitochondrial transcriptome
    • Mercer TR, et al. (2011) The human mitochondrial transcriptome. Cell 146(4): 645-658.
    • (2011) Cell , vol.146 , Issue.4 , pp. 645-658
    • Mercer, T.R.1
  • 25
    • 84857757047 scopus 로고    scopus 로고
    • The primary transcriptome of barley chloroplasts: Numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase
    • Zhelyazkova P, et al. (2012) The primary transcriptome of barley chloroplasts: Numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase. Plant Cell 24(1):123-136.
    • (2012) Plant Cell , vol.24 , Issue.1 , pp. 123-136
    • Zhelyazkova, P.1
  • 26
    • 33645214213 scopus 로고    scopus 로고
    • Mutation pressure and the evolution of organelle genomic architecture
    • Lynch M, Koskella B, Schaack S (2006) Mutation pressure and the evolution of organelle genomic architecture. Science 311(5768):1727-1730.
    • (2006) Science , vol.311 , Issue.5768 , pp. 1727-1730
    • Lynch, M.1    Koskella, B.2    Schaack, S.3
  • 27
    • 77957238416 scopus 로고    scopus 로고
    • Low nucleotide diversity for the expanded organelle and nuclear genomes of Volvox carteri supports the mutational-hazard hypothesis
    • Smith DR, Lee RW (2010) Low nucleotide diversity for the expanded organelle and nuclear genomes of Volvox carteri supports the mutational-hazard hypothesis. Mol Biol Evol 27(10):2244-2256.
    • (2010) Mol Biol Evol , vol.27 , Issue.10 , pp. 2244-2256
    • Smith, D.R.1    Lee, R.W.2
  • 28
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling PJ, Palmer JD (2008) Horizontal gene transfer in eukaryotic evolution. Nat Rev Genet 9(8):605-618.
    • (2008) Nat Rev Genet , vol.9 , Issue.8 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 29
    • 84890355580 scopus 로고    scopus 로고
    • An archaeal origin of eukaryotes supports only two primary domains of life
    • Williams TA, Foster PG, Cox CJ, Embley TM (2013) An archaeal origin of eukaryotes supports only two primary domains of life. Nature 504(7479):231-236.
    • (2013) Nature , vol.504 , Issue.7479 , pp. 231-236
    • Williams, T.A.1    Foster, P.G.2    Cox, C.J.3    Embley, T.M.4
  • 30
    • 84900009860 scopus 로고    scopus 로고
    • A 400,000-year-old mitochondrial genome questions phylogenetic relationships amongst archaic hominins: Using the latest advances in ancient genomics, the mitochondrial genome sequence of a 400,000-year-old hominin has been deciphered
    • Orlando L (2014) A 400,000-year-old mitochondrial genome questions phylogenetic relationships amongst archaic hominins: Using the latest advances in ancient genomics, the mitochondrial genome sequence of a 400,000-year-old hominin has been deciphered. BioEssays 36(6):598-605.
    • (2014) BioEssays , vol.36 , Issue.6 , pp. 598-605
    • Orlando, L.1
  • 33
    • 43949134849 scopus 로고    scopus 로고
    • Apicoplast translation, transcription and genome replication: Targets for antimalarial antibiotics
    • Dahl EL, Rosenthal PJ (2008) Apicoplast translation, transcription and genome replication: Targets for antimalarial antibiotics. Trends Parasitol 24(6):279-284.
    • (2008) Trends Parasitol , vol.24 , Issue.6 , pp. 279-284
    • Dahl, E.L.1    Rosenthal, P.J.2
  • 34
    • 0025607160 scopus 로고
    • The genetic code in mitochondria and chloroplasts
    • Jukes TH, Osawa S (1990) The genetic code in mitochondria and chloroplasts. Experientia 46(11-12):1117-1126.
    • (1990) Experientia , vol.46 , Issue.11-12 , pp. 1117-1126
    • Jukes, T.H.1    Osawa, S.2
  • 35
    • 0027201750 scopus 로고
    • On the evolution of RNA editing
    • Covello PS, Gray MW (1993) On the evolution of RNA editing. Trends Genet 9(8): 265-268.
    • (1993) Trends Genet , vol.9 , Issue.8 , pp. 265-268
    • Covello, P.S.1    Gray, M.W.2
  • 36
    • 62849116357 scopus 로고    scopus 로고
    • Dinoflagellate mitochondrial genomes: Stretching the rules of molecular biology
    • Waller RF, Jackson CJ (2009) Dinoflagellate mitochondrial genomes: Stretching the rules of molecular biology. BioEssays 31(2):237-245.
    • (2009) BioEssays , vol.31 , Issue.2 , pp. 237-245
    • Waller, R.F.1    Jackson, C.J.2
  • 38
    • 79954582755 scopus 로고    scopus 로고
    • Does constructive neutral evolution play an important role in the origin of cellular complexity? Making sense of the origins and uses of biological complexity
    • Speijer D (2011) Does constructive neutral evolution play an important role in the origin of cellular complexity? Making sense of the origins and uses of biological complexity. BioEssays 33(5):344-349.
    • (2011) BioEssays , vol.33 , Issue.5 , pp. 344-349
    • Speijer, D.1
  • 39
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore JL (1999) Animal mitochondrial genomes. Nucleic Acids Res 27(8):1767-1780.
    • (1999) Nucleic Acids Res , vol.27 , Issue.8 , pp. 1767-1780
    • Boore, J.L.1
  • 40
    • 84856483430 scopus 로고    scopus 로고
    • Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates
    • Sloan DB, et al. (2012) Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates. PLoS Biol 10(1):e1001241.
    • (2012) PLoS Biol , vol.10 , Issue.1
    • Sloan, D.B.1
  • 41
    • 84876158905 scopus 로고    scopus 로고
    • Updating our view of organelle genome nucleotide landscape
    • Smith DR (2012) Updating our view of organelle genome nucleotide landscape. Front Genet 3:175.
    • (2012) Front Genet , vol.3 , pp. 175
    • Smith, D.R.1
  • 42
    • 79960100341 scopus 로고    scopus 로고
    • Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: The root of frequent plant mtDNA recombination in early tracheophytes
    • Hecht J, Grewe F, Knoop V (2011) Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: The root of frequent plant mtDNA recombination in early tracheophytes. Genome Biol Evol 3:344-358.
    • (2011) Genome Biol Evol , vol.3 , pp. 344-358
    • Hecht, J.1    Grewe, F.2    Knoop, V.3
  • 43
    • 84891458417 scopus 로고    scopus 로고
    • Gene conversion shapes linear mitochondrial genome architecture
    • Smith DR, Keeling PJ (2013) Gene conversion shapes linear mitochondrial genome architecture. Genome Biol Evol 5(5):905-912.
    • (2013) Genome Biol Evol , vol.5 , Issue.5 , pp. 905-912
    • Smith, D.R.1    Keeling, P.J.2
  • 44
    • 77957708154 scopus 로고    scopus 로고
    • Evolution of linear mitochondrial DNA in three known lineages of Polytomella
    • Smith DR, Hua J, Lee RW (2010) Evolution of linear mitochondrial DNA in three known lineages of Polytomella. Curr Genet 56(5):427-438.
    • (2010) Curr Genet , vol.56 , Issue.5 , pp. 427-438
    • Smith, D.R.1    Hua, J.2    Lee, R.W.3
  • 45
    • 0027359351 scopus 로고
    • Mitochondrial DNA of Chlamydomonas reinhardtii: The structure of the ends of the linear 15.8-kb genome suggests mechanisms for DNA replication
    • Vahrenholz C, Riemen G, Pratje E, Dujon B, Michaelis G (1993) Mitochondrial DNA of Chlamydomonas reinhardtii: The structure of the ends of the linear 15.8-kb genome suggests mechanisms for DNA replication. Curr Genet 24(3):241-247.
    • (1993) Curr Genet , vol.24 , Issue.3 , pp. 241-247
    • Vahrenholz, C.1    Riemen, G.2    Pratje, E.3    Dujon, B.4    Michaelis, G.5
  • 46
    • 77954566307 scopus 로고    scopus 로고
    • The mitochondrial genome of the pathogenic yeast Candida subhashii: GC-rich linear DNA with a protein covalently attached to the 5′ termini
    • Fricova D, et al. (2010) The mitochondrial genome of the pathogenic yeast Candida subhashii: GC-rich linear DNA with a protein covalently attached to the 5′ termini. Microbiology 156(Pt 7):2153-2163.
    • (2010) Microbiology , vol.156 , Issue.7 , pp. 2153-2163
    • Fricova, D.1
  • 47
    • 84888586835 scopus 로고    scopus 로고
    • Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia
    • Janouskovec J, et al. (2013) Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia. Mol Biol Evol 30(11):2447-2462.
    • (2013) Mol Biol Evol , vol.30 , Issue.11 , pp. 2447-2462
    • Janouskovec, J.1
  • 48
    • 84862993199 scopus 로고    scopus 로고
    • First complete mitochondrial genome sequence from a box jellyfish reveals a highly fragmented linear architecture and insights into telomere evolution
    • Smith DR, et al. (2012) First complete mitochondrial genome sequence from a box jellyfish reveals a highly fragmented linear architecture and insights into telomere evolution. Genome Biol Evol 4(1):52-58.
    • (2012) Genome Biol Evol , vol.4 , Issue.1 , pp. 52-58
    • Smith, D.R.1
  • 49
    • 80051930449 scopus 로고    scopus 로고
    • Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber
    • Alverson AJ, Rice DW, Dickinson S, Barry K, Palmer JD (2011) Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber. Plant Cell 23(7):2499-2513.
    • (2011) Plant Cell , vol.23 , Issue.7 , pp. 2499-2513
    • Alverson, A.J.1    Rice, D.W.2    Dickinson, S.3    Barry, K.4    Palmer, J.D.5
  • 50
    • 84876062140 scopus 로고    scopus 로고
    • Evolution of extensively fragmented mitochondrial genomes in the lice of humans
    • Shao R, Zhu XQ, Barker SC, Herd K (2012) Evolution of extensively fragmented mitochondrial genomes in the lice of humans. Genome Biol Evol 4(11):1088-1101.
    • (2012) Genome Biol Evol , vol.4 , Issue.11 , pp. 1088-1101
    • Shao, R.1    Zhu, X.Q.2    Barker, S.C.3    Herd, K.4
  • 51
    • 79951574071 scopus 로고    scopus 로고
    • Systematically fragmented genes in a multipartite mitochondrial genome
    • Vlcek C, Marande W, Teijeiro S, Lukes J, Burger G (2011) Systematically fragmented genes in a multipartite mitochondrial genome. Nucleic Acids Res 39(3):979-988.
    • (2011) Nucleic Acids Res , vol.39 , Issue.3 , pp. 979-988
    • Vlcek, C.1    Marande, W.2    Teijeiro, S.3    Lukes, J.4    Burger, G.5
  • 52
    • 0036691852 scopus 로고    scopus 로고
    • Kinetoplast DNA network: Evolution of an improbable structure
    • Lukes J, et al. (2002) Kinetoplast DNA network: Evolution of an improbable structure. Eukaryot Cell 1(4):495-502.
    • (2002) Eukaryot Cell , vol.1 , Issue.4 , pp. 495-502
    • Lukes, J.1
  • 53
    • 0037417915 scopus 로고    scopus 로고
    • Unique mitochondrial genome architecture in unicellular relatives of animals
    • Burger G, Forget L, Zhu Y, Gray MW, Lang BF (2003) Unique mitochondrial genome architecture in unicellular relatives of animals. Proc Natl Acad Sci USA 100(3):892-897.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.3 , pp. 892-897
    • Burger, G.1    Forget, L.2    Zhu, Y.3    Gray, M.W.4    Lang, B.F.5
  • 54
    • 84862499173 scopus 로고    scopus 로고
    • Genome fragmentation is not confined to the peridinin plastid in dinoflagellates
    • Espelund M, et al. (2012) Genome fragmentation is not confined to the peridinin plastid in dinoflagellates. PLoS ONE 7(6):e38809.
    • (2012) PLoS ONE , vol.7 , Issue.6
    • Espelund, M.1
  • 55
    • 77951950846 scopus 로고    scopus 로고
    • The Dunaliella salina organelle genomes: Large sequences, inflated with intronic and intergenic DNA
    • Smith DR, et al. (2010) The Dunaliella salina organelle genomes: Large sequences, inflated with intronic and intergenic DNA. BMC Plant Biol 10:83.
    • (2010) BMC Plant Biol , vol.10 , pp. 83
    • Smith, D.R.1
  • 56
    • 77951598028 scopus 로고    scopus 로고
    • Divergence of the mitochondrial genome structure in the apicomplexan parasites, Babesia and Theileria
    • Hikosaka K, et al. (2010) Divergence of the mitochondrial genome structure in the apicomplexan parasites, Babesia and Theileria. Mol Biol Evol 27(5):1107-1116.
    • (2010) Mol Biol Evol , vol.27 , Issue.5 , pp. 1107-1116
    • Hikosaka, K.1
  • 57
    • 84902970129 scopus 로고    scopus 로고
    • Chromera velia, endosymbioses and the rhodoplex hypothesis - Plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages)
    • Petersen J, et al. (2014) Chromera velia, endosymbioses and the rhodoplex hypothesis - Plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages). Genome Biol Evol 6(3):666-684.
    • (2014) Genome Biol Evol , vol.6 , Issue.3 , pp. 666-684
    • Petersen, J.1
  • 58
    • 80155172617 scopus 로고    scopus 로고
    • Extreme mitochondrial evolution in the ctenophore Mnemiopsis leidyi: Insight from mtDNA and the nuclear genome
    • Pett W, et al. (2011) Extreme mitochondrial evolution in the ctenophore Mnemiopsis leidyi: Insight from mtDNA and the nuclear genome. Mitochondrial DNA 22(4): 130-142.
    • (2011) Mitochondrial DNA , vol.22 , Issue.4 , pp. 130-142
    • Pett, W.1
  • 59
    • 33645052438 scopus 로고    scopus 로고
    • The mitochondrial genome of the wine yeast Hanseniaspora uvarum: A unique genome organization among yeast/fungal counterparts
    • Pramateftaki PV, Kouvelis VN, Lanaridis P, Typas MA (2006) The mitochondrial genome of the wine yeast Hanseniaspora uvarum: A unique genome organization among yeast/fungal counterparts. FEMS Yeast Res 6(1):77-90.
    • (2006) FEMS Yeast Res , vol.6 , Issue.1 , pp. 77-90
    • Pramateftaki, P.V.1    Kouvelis, V.N.2    Lanaridis, P.3    Typas, M.A.4
  • 60
    • 77958495156 scopus 로고    scopus 로고
    • The exceptionally large chloroplast genome of the green alga Floydiella terrestris illuminates the evolutionary history of the Chlorophyceae
    • Brouard JS, Otis C, Lemieux C, Turmel M (2010) The exceptionally large chloroplast genome of the green alga Floydiella terrestris illuminates the evolutionary history of the Chlorophyceae. Genome Biol Evol 2:240-256.
    • (2010) Genome Biol Evol , vol.2 , pp. 240-256
    • Brouard, J.S.1    Otis, C.2    Lemieux, C.3    Turmel, M.4
  • 61
    • 84892548302 scopus 로고    scopus 로고
    • Is ftsH the key to plastid longevity in sacoglossan slugs?
    • de Vries J, et al. (2013) Is ftsH the key to plastid longevity in sacoglossan slugs? Genome Biol Evol 5(12):2540-2548.
    • (2013) Genome Biol Evol , vol.5 , Issue.12 , pp. 2540-2548
    • De Vries, J.1
  • 62
    • 84889573821 scopus 로고    scopus 로고
    • The chloroplast genome of a Symbiodinium sp. clade C3 isolate
    • Barbrook AC, Voolstra CR, Howe CJ (2014) The chloroplast genome of a Symbiodinium sp. clade C3 isolate. Protist 165(1):1-13.
    • (2014) Protist , vol.165 , Issue.1 , pp. 1-13
    • Barbrook, A.C.1    Voolstra, C.R.2    Howe, C.J.3
  • 63
    • 84865479657 scopus 로고    scopus 로고
    • The Plasmodium apicoplast genome: Conserved structure and close relationship of P. ovale to rodent malaria parasites
    • Arisue N, et al. (2012) The Plasmodium apicoplast genome: Conserved structure and close relationship of P. ovale to rodent malaria parasites. Mol Biol Evol 29(9): 2095-2099.
    • (2012) Mol Biol Evol , vol.29 , Issue.9 , pp. 2095-2099
    • Arisue, N.1
  • 64
    • 33646695266 scopus 로고    scopus 로고
    • The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured
    • de Koning AP, Keeling PJ (2006) The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured. BMC Biol 4:12.
    • (2006) BMC Biol , vol.4 , pp. 12
    • De Koning, A.P.1    Keeling, P.J.2
  • 65
    • 0027176391 scopus 로고
    • Complete sequence of Euglena gracilis chloroplast DNA
    • Hallick RB, et al. (1993) Complete sequence of Euglena gracilis chloroplast DNA. Nucleic Acids Res 21(15):3537-3544.
    • (1993) Nucleic Acids Res , vol.21 , Issue.15 , pp. 3537-3544
    • Hallick, R.B.1
  • 66
    • 84879027741 scopus 로고    scopus 로고
    • The 135 kbp mitochondrial genome of Agaricus bisporus is the largest known eukaryotic reservoir of group I introns and plasmidrelated sequences
    • Férandon C, Xu J, Barroso G (2013) The 135 kbp mitochondrial genome of Agaricus bisporus is the largest known eukaryotic reservoir of group I introns and plasmidrelated sequences. Fungal Genet Biol 55:85-91.
    • (2013) Fungal Genet Biol , vol.55 , pp. 85-91
    • Férandon, C.1    Xu, J.2    Barroso, G.3
  • 67
    • 84876584752 scopus 로고    scopus 로고
    • Strikingly bacteria-like and gene-rich mitochondrial genomes throughout jakobid protists
    • Burger G, Gray MW, Forget L, Lang BF (2013) Strikingly bacteria-like and gene-rich mitochondrial genomes throughout jakobid protists. Genome Biol Evol 5(2): 418-438.
    • (2013) Genome Biol Evol , vol.5 , Issue.2 , pp. 418-438
    • Burger, G.1    Gray, M.W.2    Forget, L.3    Lang, B.F.4
  • 68
    • 34547938897 scopus 로고    scopus 로고
    • The highly reduced and fragmented mitochondrial genome of the early-branching dinoflagellate Oxyrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomes
    • Slamovits CH, Saldarriaga JF, Larocque A, Keeling PJ (2007) The highly reduced and fragmented mitochondrial genome of the early-branching dinoflagellate Oxyrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomes. J Mol Biol 372(2):356-368.
    • (2007) J Mol Biol , vol.372 , Issue.2 , pp. 356-368
    • Slamovits, C.H.1    Saldarriaga, J.F.2    Larocque, A.3    Keeling, P.J.4
  • 69
    • 84875439665 scopus 로고    scopus 로고
    • Evolution of red algal plastid genomes: Ancient architectures, introns, horizontal gene transfer, and taxonomic utility of plastid markers
    • Janouškovec J, et al. (2013) Evolution of red algal plastid genomes: Ancient architectures, introns, horizontal gene transfer, and taxonomic utility of plastid markers. PLoS ONE 8(3):e59001.
    • (2013) PLoS ONE , vol.8 , Issue.3
    • Janouškovec, J.1
  • 70
    • 84930154239 scopus 로고    scopus 로고
    • Plastid genomes of parasitic plants: A trail of reductions and losses
    • ed Bullerwell C Springer, Berlin
    • Krause K (2012) Plastid genomes of parasitic plants: a trail of reductions and losses. Organelle Genetics, ed Bullerwell C (Springer, Berlin), pp 79-103.
    • (2012) Organelle Genetics , pp. 79-103
    • Krause, K.1
  • 71
    • 0024277968 scopus 로고
    • Scrambled ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA
    • Boer PH, Gray MW (1988) Scrambled ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA. Cell 55(3):399-411.
    • (1988) Cell , vol.55 , Issue.3 , pp. 399-411
    • Boer, P.H.1    Gray, M.W.2
  • 72
    • 79952204281 scopus 로고    scopus 로고
    • Ribosomal RNA genes in Euglena gracilis mitochondrial DNA: Fragmented genes in a seemingly fragmented genome
    • Spencer DF, Gray MW (2011) Ribosomal RNA genes in Euglena gracilis mitochondrial DNA: Fragmented genes in a seemingly fragmented genome. Mol Genet Genomics 285(1):19-31.
    • (2011) Mol Genet Genomics , vol.285 , Issue.1 , pp. 19-31
    • Spencer, D.F.1    Gray, M.W.2
  • 73
    • 84862654563 scopus 로고    scopus 로고
    • The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum
    • Feagin JE, et al. (2012) The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum. PLoS ONE 7(6):e38320.
    • (2012) PLoS ONE , vol.7 , Issue.6
    • Feagin, J.E.1
  • 74
    • 67349147862 scopus 로고    scopus 로고
    • Substitutional editing of Heterocapsa triquetra chloroplast transcripts and a folding model for its divergent chloroplast 16S rRNA
    • Dang Y, Green BR (2009) Substitutional editing of Heterocapsa triquetra chloroplast transcripts and a folding model for its divergent chloroplast 16S rRNA. Gene 442(1-2): 73-80.
    • (2009) Gene , vol.442 , Issue.1-2 , pp. 73-80
    • Dang, Y.1    Green, B.R.2
  • 75
    • 0032724587 scopus 로고    scopus 로고
    • Sequence evidence for an altered genetic code in the Neospora caninum plastid
    • Lang-Unnasch N, Aiello DP (1999) Sequence evidence for an altered genetic code in the Neospora caninum plastid. Int J Parasitol 29(10):1557-1562.
    • (1999) Int J Parasitol , vol.29 , Issue.10 , pp. 1557-1562
    • Lang-Unnasch, N.1    Aiello, D.P.2
  • 76
    • 79956343241 scopus 로고    scopus 로고
    • A deviant genetic code in the green alga-derived plastid in the dinoflagellate Lepidodinium chlorophorum
    • Matsumoto T, Ishikawa SA, Hashimoto T, Inagaki Y (2011) A deviant genetic code in the green alga-derived plastid in the dinoflagellate Lepidodinium chlorophorum. Mol Phylogenet Evol 60(1):68-72.
    • (2011) Mol Phylogenet Evol , vol.60 , Issue.1 , pp. 68-72
    • Matsumoto, T.1    Ishikawa, S.A.2    Hashimoto, T.3    Inagaki, Y.4
  • 77
    • 4444336611 scopus 로고    scopus 로고
    • Unexpectedly complex editing patterns at dinucleotide insertion sites in Physarum mitochondria
    • Byrne EM, Gott JM (2004) Unexpectedly complex editing patterns at dinucleotide insertion sites in Physarum mitochondria. Mol Cell Biol 24(18):7821-7828.
    • (2004) Mol Cell Biol , vol.24 , Issue.18 , pp. 7821-7828
    • Byrne, E.M.1    Gott, J.M.2
  • 78
    • 33645059434 scopus 로고    scopus 로고
    • The evolution and diversity of kinetoplastid flagellates
    • Simpson AGB, Stevens JR, Lukeš J (2006) The evolution and diversity of kinetoplastid flagellates. Trends Parasitol 22(4):168-174.
    • (2006) Trends Parasitol , vol.22 , Issue.4 , pp. 168-174
    • Simpson, A.G.B.1    Stevens, J.R.2    Lukeš, J.3
  • 79
    • 0036303481 scopus 로고    scopus 로고
    • Widespread and extensive editing of mitochondrial mRNAS in dinoflagellates
    • Lin S, Zhang H, Spencer DF, Norman JE, Gray MW (2002) Widespread and extensive editing of mitochondrial mRNAS in dinoflagellates. J Mol Biol 320(4):727-739.
    • (2002) J Mol Biol , vol.320 , Issue.4 , pp. 727-739
    • Lin, S.1    Zhang, H.2    Spencer, D.F.3    Norman, J.E.4    Gray, M.W.5
  • 80
    • 84875620376 scopus 로고    scopus 로고
    • A tertiary plastid gains RNA editing in its new host
    • Jackson CJ, Gornik SG, Waller RF (2013) A tertiary plastid gains RNA editing in its new host. Mol Biol Evol 30(4):788-792.
    • (2013) Mol Biol Evol , vol.30 , Issue.4 , pp. 788-792
    • Jackson, C.J.1    Gornik, S.G.2    Waller, R.F.3
  • 81
    • 83055191560 scopus 로고    scopus 로고
    • Extending the limited transfer window hypothesis to inter-organelle DNA migration
    • Smith DR (2011) Extending the limited transfer window hypothesis to inter-organelle DNA migration. Genome Biol Evol 3:743-748.
    • (2011) Genome Biol Evol , vol.3 , pp. 743-748
    • Smith, D.R.1
  • 82
    • 77952837838 scopus 로고    scopus 로고
    • Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)
    • Alverson AJ, et al. (2010) Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae). Mol Biol Evol 27(6):1436-1448.
    • (2010) Mol Biol Evol , vol.27 , Issue.6 , pp. 1436-1448
    • Alverson, A.J.1
  • 83
    • 78650727966 scopus 로고    scopus 로고
    • Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion
    • Hao W, Richardson AO, Zheng Y, Palmer JD (2010) Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion. Proc Natl Acad Sci USA 107(50):21576-21581.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.50 , pp. 21576-21581
    • Hao, W.1    Richardson, A.O.2    Zheng, Y.3    Palmer, J.D.4
  • 84
    • 84890824581 scopus 로고    scopus 로고
    • Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella
    • Rice DW, et al. (2013) Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella. Science 342(6165):1468-1473.
    • (2013) Science , vol.342 , Issue.6165 , pp. 1468-1473
    • Rice, D.W.1
  • 85
    • 33845904639 scopus 로고    scopus 로고
    • Horizontal gene transfer in plants
    • Richardson AO, Palmer JD (2007) Horizontal gene transfer in plants. J Exp Bot 58(1):1-9.
    • (2007) J Exp Bot , vol.58 , Issue.1 , pp. 1-9
    • Richardson, A.O.1    Palmer, J.D.2
  • 86
    • 84906494501 scopus 로고    scopus 로고
    • Next-generation sequencing data suggest that certain nonphotosynthetic green plants have lost their plastid genomes
    • Smith DR, Asmail SR (2014) Next-generation sequencing data suggest that certain nonphotosynthetic green plants have lost their plastid genomes. New Phytol 204(1): 7-11.
    • (2014) New Phytol , vol.204 , Issue.1 , pp. 7-11
    • Smith, D.R.1    Asmail, S.R.2
  • 87
    • 84862230226 scopus 로고    scopus 로고
    • De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome
    • Iorizzo M, et al. (2012) De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome. BMC Plant Biol 12:61.
    • (2012) BMC Plant Biol , vol.12 , pp. 61
    • Iorizzo, M.1
  • 88
    • 84892493808 scopus 로고    scopus 로고
    • Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (apocynaceae)
    • Straub SCK, Cronn RC, Edwards C, Fishbein M, Liston A (2013) Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (apocynaceae). Genome Biol Evol 5(10):1872-1885.
    • (2013) Genome Biol Evol , vol.5 , Issue.10 , pp. 1872-1885
    • Straub, S.C.K.1    Cronn, R.C.2    Edwards, C.3    Fishbein, M.4    Liston, A.5
  • 89
    • 84904968331 scopus 로고    scopus 로고
    • The dynamic history of plastid genomes in the Campanulaceae sensu lato is unique among angiosperms
    • Knox EB (2014) The dynamic history of plastid genomes in the Campanulaceae sensu lato is unique among angiosperms. Proc Natl Acad Sci USA 111(30):11097-11102.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.30 , pp. 11097-11102
    • Knox, E.B.1
  • 90
    • 84902985281 scopus 로고    scopus 로고
    • Serial gene losses and foreign DNA underlie size and sequence variation in the plastid genomes of diatoms
    • Ruck EC, Nakov T, Jansen RK, Theriot EC, Alverson AJ (2014) Serial gene losses and foreign DNA underlie size and sequence variation in the plastid genomes of diatoms. Genome Biol Evol 6(3):644-654.
    • (2014) Genome Biol Evol , vol.6 , Issue.3 , pp. 644-654
    • Ruck, E.C.1    Nakov, T.2    Jansen, R.K.3    Theriot, E.C.4    Alverson, A.J.5
  • 91
    • 37249080252 scopus 로고    scopus 로고
    • Linear plasmids in plant mitochondria: Peaceful coexistences or malicious invasions?
    • Handa H (2008) Linear plasmids in plant mitochondria: Peaceful coexistences or malicious invasions? Mitochondrion 8(1):15-25.
    • (2008) Mitochondrion , vol.8 , Issue.1 , pp. 15-25
    • Handa, H.1
  • 92
    • 0033810559 scopus 로고    scopus 로고
    • Localization of plasmid like DNA in giant-celled marine green algae
    • La Claire JW, Wang J (2000) Localization of plasmid like DNA in giant-celled marine green algae. Protoplasma 213:157-164.
    • (2000) Protoplasma , vol.213 , pp. 157-164
    • La Claire, J.W.1    Wang, J.2
  • 93
    • 70849112619 scopus 로고    scopus 로고
    • Unparalleled GC content in the plastid DNA of Selaginella
    • Smith DR (2009) Unparalleled GC content in the plastid DNA of Selaginella. Plant Mol Biol 71(6):627-639.
    • (2009) Plant Mol Biol , vol.71 , Issue.6 , pp. 627-639
    • Smith, D.R.1
  • 94
    • 34047227131 scopus 로고    scopus 로고
    • The complete chloroplast and mitochondrial DNA sequence of Ostreococcus tauri: Organelle genomes of the smallest eukaryote are examples of compaction
    • Robbens S, et al. (2007) The complete chloroplast and mitochondrial DNA sequence of Ostreococcus tauri: Organelle genomes of the smallest eukaryote are examples of compaction. Mol Biol Evol 24(4):956-968.
    • (2007) Mol Biol Evol , vol.24 , Issue.4 , pp. 956-968
    • Robbens, S.1
  • 95
    • 84866347516 scopus 로고    scopus 로고
    • Evolutionary rate variation in organelle genomes: The role of mutational processes
    • ed Bullerwell C Springer, Berlin
    • Sloan DB, Taylor DR (2012) Evolutionary rate variation in organelle genomes: the role of mutational processes. Organelle Genetics, ed Bullerwell C (Springer, Berlin), pp 123-146.
    • (2012) Organelle Genetics , pp. 123-146
    • Sloan, D.B.1    Taylor, D.R.2
  • 96
    • 60349127044 scopus 로고    scopus 로고
    • Protein transport in organelles: Dual targeting of proteins to mitochondria and chloroplasts
    • Carrie C, Giraud E, Whelan J (2009) Protein transport in organelles: Dual targeting of proteins to mitochondria and chloroplasts. FEBS J 276(5):1187-1195.
    • (2009) FEBS J , vol.276 , Issue.5 , pp. 1187-1195
    • Carrie, C.1    Giraud, E.2    Whelan, J.3
  • 97
    • 84869210902 scopus 로고    scopus 로고
    • Functional remodeling of RNA processing in replacement chloroplasts by pathways retained from their predecessors
    • Dorrell RG, Howe CJ (2012) Functional remodeling of RNA processing in replacement chloroplasts by pathways retained from their predecessors. Proc Natl Acad Sci USA 109(46):18879-18884.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.46 , pp. 18879-18884
    • Dorrell, R.G.1    Howe, C.J.2
  • 98
    • 23644458269 scopus 로고    scopus 로고
    • Genomics-based dissection of the cross-talk of chloroplasts with the nucleus and mitochondria in Arabidopsis
    • Leister D (2005) Genomics-based dissection of the cross-talk of chloroplasts with the nucleus and mitochondria in Arabidopsis. Gene 354:110-116.
    • (2005) Gene , vol.354 , pp. 110-116
    • Leister, D.1
  • 99
    • 68249126127 scopus 로고    scopus 로고
    • Origin of an alternative genetic code in the extremely small and GC-rich genome of a bacterial symbiont
    • McCutcheon JP, McDonald BR, Moran NA (2009) Origin of an alternative genetic code in the extremely small and GC-rich genome of a bacterial symbiont. PLoS Genet 5(7):e1000565.
    • (2009) PLoS Genet , vol.5 , Issue.7
    • McCutcheon, J.P.1    McDonald, B.R.2    Moran, N.A.3
  • 100
    • 0344522705 scopus 로고    scopus 로고
    • Plant mitochondria actively import DNA via the permeability transition pore complex
    • Koulintchenko M, Konstantinov Y, Dietrich A (2003) Plant mitochondria actively import DNA via the permeability transition pore complex. EMBO J 22(6):1245-1254.
    • (2003) EMBO J , vol.22 , Issue.6 , pp. 1245-1254
    • Koulintchenko, M.1    Konstantinov, Y.2    Dietrich, A.3
  • 101
    • 29644437055 scopus 로고    scopus 로고
    • Natural competence of mammalian mitochondria allows the molecular investigation of mitochondrial gene expression
    • Koulintchenko M, Temperley RJ, Mason PA, Dietrich A, Lightowlers RN (2006) Natural competence of mammalian mitochondria allows the molecular investigation of mitochondrial gene expression. Hum Mol Genet 15(1):143-154.
    • (2006) Hum Mol Genet , vol.15 , Issue.1 , pp. 143-154
    • Koulintchenko, M.1    Temperley, R.J.2    Mason, P.A.3    Dietrich, A.4    Lightowlers, R.N.5
  • 102
    • 84875610117 scopus 로고    scopus 로고
    • Mitochondrial DNA of Clathrina clathrus (Calcarea, Calcinea): Six linear chromosomes, fragmented rRNAs, tRNA editing, and a novel genetic code
    • Lavrov DV, et al. (2013) Mitochondrial DNA of Clathrina clathrus (Calcarea, Calcinea): Six linear chromosomes, fragmented rRNAs, tRNA editing, and a novel genetic code. Mol Biol Evol 30(4):865-880.
    • (2013) Mol Biol Evol , vol.30 , Issue.4 , pp. 865-880
    • Lavrov, D.V.1
  • 103
    • 33645574750 scopus 로고    scopus 로고
    • No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation
    • Hellberg ME (2006) No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation. BMC Evol Biol 6:24.
    • (2006) BMC Evol Biol , vol.6 , pp. 24
    • Hellberg, M.E.1
  • 104
    • 84876144707 scopus 로고    scopus 로고
    • The "fossilized" mitochondrial genome of Liriodendron tulipifera: Ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate
    • Richardson AO, Rice DW, Young GJ, Alverson AJ, Palmer JD (2013) The "fossilized" mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate. BMC Biol 11:29.
    • (2013) BMC Biol , vol.11 , pp. 29
    • Richardson, A.O.1    Rice, D.W.2    Young, G.J.3    Alverson, A.J.4    Palmer, J.D.5
  • 105
    • 82555189836 scopus 로고    scopus 로고
    • Similar relative mutation rates in the three genetic compartments of Mesostigma and Chlamydomonas
    • Hua J, Smith DR, Borza T, Lee RW (2012) Similar relative mutation rates in the three genetic compartments of Mesostigma and Chlamydomonas. Protist 163(1):105-115.
    • (2012) Protist , vol.163 , Issue.1 , pp. 105-115
    • Hua, J.1    Smith, D.R.2    Borza, T.3    Lee, R.W.4
  • 106
    • 84891596059 scopus 로고    scopus 로고
    • Plant mitochondrial genome evolution can be explained by DNA repair mechanisms
    • Christensen AC (2013) Plant mitochondrial genome evolution can be explained by DNA repair mechanisms. Genome Biol Evol 5(6):1079-1086.
    • (2013) Genome Biol Evol , vol.5 , Issue.6 , pp. 1079-1086
    • Christensen, A.C.1
  • 107
    • 80053199003 scopus 로고    scopus 로고
    • Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis
    • Davila JI, et al. (2011) Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis. BMC Biol 9:64.
    • (2011) BMC Biol , vol.9 , pp. 64
    • Davila, J.I.1
  • 108
    • 52449104857 scopus 로고    scopus 로고
    • Rapidly evolving mitochondrial genome and directional selection in mitochondrial genes in the parasitic wasp nasonia (Hymenoptera: Pteromalidae)
    • Oliveira DCSG, Raychoudhury R, Lavrov DV, Werren JH (2008) Rapidly evolving mitochondrial genome and directional selection in mitochondrial genes in the parasitic wasp nasonia (Hymenoptera: Pteromalidae). Mol Biol Evol 25(10):2167-2180.
    • (2008) Mol Biol Evol , vol.25 , Issue.10 , pp. 2167-2180
    • Oliveira, D.C.S.G.1    Raychoudhury, R.2    Lavrov, D.V.3    Werren, J.H.4
  • 109
    • 84899580564 scopus 로고    scopus 로고
    • Unprecedented heterogeneity in the synonymous substitution rate within a plant genome
    • Zhu A, Guo W, Jain K, Mower JP (2014) Unprecedented heterogeneity in the synonymous substitution rate within a plant genome. Mol Biol Evol 31(5):1228-1236.
    • (2014) Mol Biol Evol , vol.31 , Issue.5 , pp. 1228-1236
    • Zhu, A.1    Guo, W.2    Jain, K.3    Mower, J.P.4
  • 110
    • 40949140505 scopus 로고    scopus 로고
    • Slow mitochondrial COI sequence evolution at the base of the metazoan tree and its implications for DNA barcoding
    • Huang D, Meier R, Todd PA, Chou LM (2008) Slow mitochondrial COI sequence evolution at the base of the metazoan tree and its implications for DNA barcoding. J Mol Evol 66(2):167-174.
    • (2008) J Mol Evol , vol.66 , Issue.2 , pp. 167-174
    • Huang, D.1    Meier, R.2    Todd, P.A.3    Chou, L.M.4
  • 111
    • 33646253454 scopus 로고    scopus 로고
    • Population size does not influence mitochondrial genetic diversity in animals
    • Bazin E, Glémin S, Galtier N (2006) Population size does not influence mitochondrial genetic diversity in animals. Science 312(5773):570-572.
    • (2006) Science , vol.312 , Issue.5773 , pp. 570-572
    • Bazin, E.1    Glémin, S.2    Galtier, N.3
  • 112
    • 77954316382 scopus 로고    scopus 로고
    • Comparative analysis of the mitochondrial cytochrome coxidase subunit I (COI) gene in ciliates (Alveolata, Ciliophora) and evaluation of its suitability as a biodiversity marker
    • Strüder-Kypke MC, Lynn DH (2010) Comparative analysis of the mitochondrial cytochrome coxidase subunit I (COI) gene in ciliates (Alveolata, Ciliophora) and evaluation of its suitability as a biodiversity marker. Syst Biodivers 8(1):131-148.
    • (2010) Syst Biodivers , vol.8 , Issue.1 , pp. 131-148
    • Strüder-Kypke, M.C.1    Lynn, D.H.2
  • 113
    • 84862779930 scopus 로고    scopus 로고
    • Twenty-fold difference in evolutionary rates between the mitochondrial and plastid genomes of species with secondary red plastids
    • Smith DR, Keeling PJ (2012) Twenty-fold difference in evolutionary rates between the mitochondrial and plastid genomes of species with secondary red plastids. J Eukaryot Microbiol 59(2):181-184.
    • (2012) J Eukaryot Microbiol , vol.59 , Issue.2 , pp. 181-184
    • Smith, D.R.1    Keeling, P.J.2
  • 114
    • 84885592522 scopus 로고    scopus 로고
    • Holarctic phylogeography of the testate amoeba Hyalosphenia papilio (Amoebozoa: Arcellinida) reveals extensive genetic diversity explained more by environment than dispersal limitation
    • Heger TJ, Mitchell EAD, Leander BS (2013) Holarctic phylogeography of the testate amoeba Hyalosphenia papilio (Amoebozoa: Arcellinida) reveals extensive genetic diversity explained more by environment than dispersal limitation. Mol Ecol 22(20): 5172-5184.
    • (2013) Mol Ecol , vol.22 , Issue.20 , pp. 5172-5184
    • Heger, T.J.1    Mitchell, E.A.D.2    Leander, B.S.3
  • 115
    • 84874795632 scopus 로고    scopus 로고
    • Rates of molecular evolution and diversification in plants: Chloroplast substitution rates correlate with species-richness in the Proteaceae
    • Duchene D, Bromham L (2013) Rates of molecular evolution and diversification in plants: Chloroplast substitution rates correlate with species-richness in the Proteaceae. BMC Evol Biol 13:65.
    • (2013) BMC Evol Biol , vol.13 , pp. 65
    • Duchene, D.1    Bromham, L.2
  • 116
    • 84905223945 scopus 로고    scopus 로고
    • Nucleotide substitution analyses of the glaucophyte Cyanophora suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida
    • Smith DR, Jackson CJ, Reyes-Prieto A (2014) Nucleotide substitution analyses of the glaucophyte Cyanophora suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida. Mol Phylogenet Evol 79:380-384.
    • (2014) Mol Phylogenet Evol , vol.79 , pp. 380-384
    • Smith, D.R.1    Jackson, C.J.2    Reyes-Prieto, A.3
  • 117
    • 78650071302 scopus 로고    scopus 로고
    • Localized hypermutation and associated gene losses in legume chloroplast genomes
    • Magee AM, et al. (2010) Localized hypermutation and associated gene losses in legume chloroplast genomes. Genome Res 20(12):1700-1710.
    • (2010) Genome Res , vol.20 , Issue.12 , pp. 1700-1710
    • Magee, A.M.1
  • 118
    • 84903836131 scopus 로고    scopus 로고
    • Multi-gene analysis of Symbiodinium dinoflagellates: A perspective on rarity, symbiosis, and evolution
    • Pochon X, Putnam HM, Gates RD (2014) Multi-gene analysis of Symbiodinium dinoflagellates: A perspective on rarity, symbiosis, and evolution. PeerJ 2:e394.
    • (2014) PeerJ , vol.2 , pp. e394
    • Pochon, X.1    Putnam, H.M.2    Gates, R.D.3
  • 120
    • 0023462635 scopus 로고
    • Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
    • Wolfe KH, Li WH, Sharp PM (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci USA 84(24):9054-9058.
    • (1987) Proc Natl Acad Sci USA , vol.84 , Issue.24 , pp. 9054-9058
    • Wolfe, K.H.1    Li, W.H.2    Sharp, P.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.