메뉴 건너뛰기




Volumn 372, Issue 2, 2007, Pages 356-368

The Highly Reduced and Fragmented Mitochondrial Genome of the Early-branching Dinoflagellate Oxyrrhis marina Shares Characteristics with both Apicomplexan and Dinoflagellate Mitochondrial Genomes

Author keywords

fusion protein; mitochondrial genome; RNA editing; translation initiation; translation termination

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; RIBOSOME RNA;

EID: 34547938897     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2007.06.085     Document Type: Article
Times cited : (85)

References (51)
  • 1
    • 0034913239 scopus 로고    scopus 로고
    • The origin and early evolution of mitochondria
    • REVIEWS1018
    • Gray M.W., Burger G., and Lang B.F. The origin and early evolution of mitochondria. Genome Biol. 2 (2001) REVIEWS1018
    • (2001) Genome Biol. , vol.2
    • Gray, M.W.1    Burger, G.2    Lang, B.F.3
  • 4
    • 0037417915 scopus 로고    scopus 로고
    • Unique mitochondrial genome architecture in unicellular relatives of animals
    • Burger G., Forget L., Zhu Y., Gray M.W., and Lang B.F. Unique mitochondrial genome architecture in unicellular relatives of animals. Proc. Natl Acad. Sci. USA 100 (2003) 892-897
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 892-897
    • Burger, G.1    Forget, L.2    Zhu, Y.3    Gray, M.W.4    Lang, B.F.5
  • 5
    • 20444456657 scopus 로고    scopus 로고
    • Unique mitochondrial genome structure in diplonemids, the sister group of kinetoplastids
    • Marande W., Lukes J., and Burger G. Unique mitochondrial genome structure in diplonemids, the sister group of kinetoplastids. Eukaryot. Cell 4 (2005) 1137-1146
    • (2005) Eukaryot. Cell , vol.4 , pp. 1137-1146
    • Marande, W.1    Lukes, J.2    Burger, G.3
  • 6
    • 0036900271 scopus 로고    scopus 로고
    • The evolutionary history of kinetoplastids and their kinetoplasts
    • Simpson A.G., Lukes J., and Roger A.J. The evolutionary history of kinetoplastids and their kinetoplasts. Mol. Biol. Evol. 19 (2002) 2071-2083
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 2071-2083
    • Simpson, A.G.1    Lukes, J.2    Roger, A.J.3
  • 7
    • 28044460265 scopus 로고    scopus 로고
    • Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates
    • Lukes J., Hashimi H., and Zikova A. Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates. Curr. Genet. 48 (2005) 277-299
    • (2005) Curr. Genet. , vol.48 , pp. 277-299
    • Lukes, J.1    Hashimi, H.2    Zikova, A.3
  • 8
    • 0036124759 scopus 로고    scopus 로고
    • Re-examining alveolate evolution using multiple protein molecular phylogenies
    • Fast N.M., Xue L., Bingham S., and Keeling P.J. Re-examining alveolate evolution using multiple protein molecular phylogenies. J. Eukaryot. Microbiol. 49 (2002) 30-37
    • (2002) J. Eukaryot. Microbiol. , vol.49 , pp. 30-37
    • Fast, N.M.1    Xue, L.2    Bingham, S.3    Keeling, P.J.4
  • 9
    • 0026017244 scopus 로고
    • Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates
    • Gajadhar A.A., Marquardt W.C., Hall R., Gunderson J., Ariztia-Carmona E.V., and Sogin M.L. Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates. Mol. Biochem. Parasitol. 45 (1991) 147-154
    • (1991) Mol. Biochem. Parasitol. , vol.45 , pp. 147-154
    • Gajadhar, A.A.1    Marquardt, W.C.2    Hall, R.3    Gunderson, J.4    Ariztia-Carmona, E.V.5    Sogin, M.L.6
  • 10
    • 0037443875 scopus 로고    scopus 로고
    • Complete sequence of the mitochondrial genome of Tetrahymena thermophila and comparative methods for identifying highly divergent genes
    • Brunk C.F., Lee L.C., Tran A.B., and Li J. Complete sequence of the mitochondrial genome of Tetrahymena thermophila and comparative methods for identifying highly divergent genes. Nucl. Acids Res. 31 (2003) 1673-1682
    • (2003) Nucl. Acids Res. , vol.31 , pp. 1673-1682
    • Brunk, C.F.1    Lee, L.C.2    Tran, A.B.3    Li, J.4
  • 11
    • 0034708339 scopus 로고    scopus 로고
    • Complete sequence of the mitochondrial genome of Tetrahymena pyriformis and comparison with Paramecium aurelia mitochondrial DNA
    • Burger G., Zhu Y., Littlejohn T.G., Greenwood S.J., Schnare M.N., Lang B.F., and Gray M.W. Complete sequence of the mitochondrial genome of Tetrahymena pyriformis and comparison with Paramecium aurelia mitochondrial DNA. J. Mol. Biol. 297 (2000) 365-380
    • (2000) J. Mol. Biol. , vol.297 , pp. 365-380
    • Burger, G.1    Zhu, Y.2    Littlejohn, T.G.3    Greenwood, S.J.4    Schnare, M.N.5    Lang, B.F.6    Gray, M.W.7
  • 13
    • 0030035107 scopus 로고    scopus 로고
    • Mitochondrial import of only one of three nuclear-encoded glutamine tRNAs in Tetrahymena thermophila
    • Rusconi C.P., and Cech T.R. Mitochondrial import of only one of three nuclear-encoded glutamine tRNAs in Tetrahymena thermophila. EMBO J. 15 (1996) 3286-3295
    • (1996) EMBO J. , vol.15 , pp. 3286-3295
    • Rusconi, C.P.1    Cech, T.R.2
  • 14
    • 0026538116 scopus 로고
    • The 6-kb element of Plasmodium falciparum encodes mitochondrial cytochrome genes
    • Feagin J.E. The 6-kb element of Plasmodium falciparum encodes mitochondrial cytochrome genes. Mol. Biochem. Parasitol. 52 (1992) 145-148
    • (1992) Mol. Biochem. Parasitol. , vol.52 , pp. 145-148
    • Feagin, J.E.1
  • 15
    • 0030788539 scopus 로고    scopus 로고
    • Identification of additional rRNA fragments encoded by the Plasmodium falciparum 6 kb element
    • Feagin J.E., Mericle B.L., Werner E., and Morris M. Identification of additional rRNA fragments encoded by the Plasmodium falciparum 6 kb element. Nucl. Acids Res. 25 (1997) 438-446
    • (1997) Nucl. Acids Res. , vol.25 , pp. 438-446
    • Feagin, J.E.1    Mericle, B.L.2    Werner, E.3    Morris, M.4
  • 17
    • 0030857039 scopus 로고    scopus 로고
    • The cytochrome oxidase subunit 1 gene (cox1) from the dinoflagellate, Crypthecodinium cohnii
    • Norman J.E., and Gray M.W. The cytochrome oxidase subunit 1 gene (cox1) from the dinoflagellate, Crypthecodinium cohnii. FEBS Letters 413 (1997) 333-338
    • (1997) FEBS Letters , vol.413 , pp. 333-338
    • Norman, J.E.1    Gray, M.W.2
  • 18
    • 0036303481 scopus 로고    scopus 로고
    • Widespread and extensive editing of mitochondrial mRNAS in dinoflagellates
    • Lin S., Zhang H., Spencer D.F., Norman J.E., and Gray M.W. Widespread and extensive editing of mitochondrial mRNAS in dinoflagellates. J. Mol. Biol. 320 (2002) 727-739
    • (2002) J. Mol. Biol. , vol.320 , pp. 727-739
    • Lin, S.1    Zhang, H.2    Spencer, D.F.3    Norman, J.E.4    Gray, M.W.5
  • 19
    • 32044446476 scopus 로고    scopus 로고
    • Development of a cob-18S rRNA gene real-time PCR assay for quantifying Pfiesteria shumwayae in the natural environment
    • Zhang H., and Lin S. Development of a cob-18S rRNA gene real-time PCR assay for quantifying Pfiesteria shumwayae in the natural environment. Appl. Environ. Microbiol. 71 (2005) 7053-7063
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 7053-7063
    • Zhang, H.1    Lin, S.2
  • 21
    • 33947513310 scopus 로고    scopus 로고
    • Fragmentation of mitochondrial large subunit rRNA in the dinoflagellate Alexandrium catenella and the evolution of rRNA structure in alveolate mitochondria
    • Kamikawa R., Inagaki Y., and Sako Y. Fragmentation of mitochondrial large subunit rRNA in the dinoflagellate Alexandrium catenella and the evolution of rRNA structure in alveolate mitochondria. Protist 158 (2007) 239-245
    • (2007) Protist , vol.158 , pp. 239-245
    • Kamikawa, R.1    Inagaki, Y.2    Sako, Y.3
  • 22
    • 0034825471 scopus 로고    scopus 로고
    • A complex organization of the gene encoding cytochrome oxidase subunit 1 in the mitochondrial genome of the dinoflagellate, Crypthecodinium cohnii: homologous recombination generates two different cox1 open reading frames
    • Norman J.E., and Gray M.W. A complex organization of the gene encoding cytochrome oxidase subunit 1 in the mitochondrial genome of the dinoflagellate, Crypthecodinium cohnii: homologous recombination generates two different cox1 open reading frames. J. Mol. Evol. 53 (2001) 351-363
    • (2001) J. Mol. Evol. , vol.53 , pp. 351-363
    • Norman, J.E.1    Gray, M.W.2
  • 23
    • 33644832394 scopus 로고    scopus 로고
    • Mitochondrial cytochrome b mRNA editing in dinoflagellates: possible ecological and evolutionary associations?
    • Zhang H., and Lin S. Mitochondrial cytochrome b mRNA editing in dinoflagellates: possible ecological and evolutionary associations?. J. Eukaryot. Microbiol. 52 (2005) 538-545
    • (2005) J. Eukaryot. Microbiol. , vol.52 , pp. 538-545
    • Zhang, H.1    Lin, S.2
  • 24
    • 0037815082 scopus 로고    scopus 로고
    • Diversity and evolution of mitochondrial RNA editing systems
    • Gray M.W. Diversity and evolution of mitochondrial RNA editing systems. IUBMB Life 55 (2003) 227-233
    • (2003) IUBMB Life , vol.55 , pp. 227-233
    • Gray, M.W.1
  • 25
    • 1842422548 scopus 로고    scopus 로고
    • Early evolutionary history of dinoflagellates and apicomplexans (Alveolata) as inferred from HSP90 and actin phylogenies
    • Leander B.S., and Keeling P.J. Early evolutionary history of dinoflagellates and apicomplexans (Alveolata) as inferred from HSP90 and actin phylogenies. J. Phycol. 40 (2007) 341-350
    • (2007) J. Phycol. , vol.40 , pp. 341-350
    • Leander, B.S.1    Keeling, P.J.2
  • 26
    • 0037217056 scopus 로고    scopus 로고
    • Multiple protein phylogenies show that Oxyhrris marina and Perkinsus marinus are early branches of the dinoflagellate lineage
    • Saldarriaga J.F., McEwan M.L., Fast N.M., Taylor F.J.R., and Keeling P.J. Multiple protein phylogenies show that Oxyhrris marina and Perkinsus marinus are early branches of the dinoflagellate lineage. Int. J. Sys. Evol. Microbiol. 53 (2003) 355-365
    • (2003) Int. J. Sys. Evol. Microbiol. , vol.53 , pp. 355-365
    • Saldarriaga, J.F.1    McEwan, M.L.2    Fast, N.M.3    Taylor, F.J.R.4    Keeling, P.J.5
  • 27
    • 0033991171 scopus 로고    scopus 로고
    • Transcriptional mapping and RNA processing of the Plasmodium falciparum mitochondrial mRNAs
    • Rehkopf D.H., Gillespie D.E., Harrell M.I., and Feagin J.E. Transcriptional mapping and RNA processing of the Plasmodium falciparum mitochondrial mRNAs. Mol. Biochem. Parasitol. 105 (2000) 91-103
    • (2000) Mol. Biochem. Parasitol. , vol.105 , pp. 91-103
    • Rehkopf, D.H.1    Gillespie, D.E.2    Harrell, M.I.3    Feagin, J.E.4
  • 28
    • 0033151814 scopus 로고    scopus 로고
    • The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum have short A tails
    • Gillespie D.E., Salazar N.A., Rehkopf D.H., and Feagin J.E. The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum have short A tails. Nucl. Acids Res. 27 (1999) 2416-2422
    • (1999) Nucl. Acids Res. , vol.27 , pp. 2416-2422
    • Gillespie, D.E.1    Salazar, N.A.2    Rehkopf, D.H.3    Feagin, J.E.4
  • 30
    • 33645100385 scopus 로고    scopus 로고
    • A tertiary plastid uses genes from two endosymbionts
    • Patron N.J., Waller R.F., and Keeling P.J. A tertiary plastid uses genes from two endosymbionts. J. Mol. Biol. 357 (2006) 1373-1382
    • (2006) J. Mol. Biol. , vol.357 , pp. 1373-1382
    • Patron, N.J.1    Waller, R.F.2    Keeling, P.J.3
  • 31
    • 4143116847 scopus 로고    scopus 로고
    • Protalveolate phylogeny and systematics and the origins of Sporozoa and dinoflagellates (phylum Myzozoa nom. nov.)
    • Cavalier-Smith T., and Chao E.E. Protalveolate phylogeny and systematics and the origins of Sporozoa and dinoflagellates (phylum Myzozoa nom. nov.). Eur. J. Protistol. 40 (2004) 185-212
    • (2004) Eur. J. Protistol. , vol.40 , pp. 185-212
    • Cavalier-Smith, T.1    Chao, E.E.2
  • 32
    • 0035998869 scopus 로고    scopus 로고
    • Polyadenylated transcripts containing random gene fragments are expressed in dinoflagellate mitochondria
    • Chaput H., Wang Y., and Morse D. Polyadenylated transcripts containing random gene fragments are expressed in dinoflagellate mitochondria. Protist 153 (2002) 111-122
    • (2002) Protist , vol.153 , pp. 111-122
    • Chaput, H.1    Wang, Y.2    Morse, D.3
  • 33
    • 0028098026 scopus 로고
    • A 7.1 kb linear DNA molecule of Theileria parva has scrambled rDNA sequences and open reading frames for mitochondrially encoded proteins
    • Kairo A., Fairlamb A.H., Gobright E., and Nene V. A 7.1 kb linear DNA molecule of Theileria parva has scrambled rDNA sequences and open reading frames for mitochondrially encoded proteins. EMBO J. 13 (1994) 898-905
    • (1994) EMBO J. , vol.13 , pp. 898-905
    • Kairo, A.1    Fairlamb, A.H.2    Gobright, E.3    Nene, V.4
  • 34
    • 0029789623 scopus 로고    scopus 로고
    • A quantitative map of nucleotide substitution rates in bacterial rRNA
    • Van de Peer Y., Chapelle S., and De Wachter R. A quantitative map of nucleotide substitution rates in bacterial rRNA. Nucl. Acids Res. 24 (1996) 3381-3391
    • (1996) Nucl. Acids Res. , vol.24 , pp. 3381-3391
    • Van de Peer, Y.1    Chapelle, S.2    De Wachter, R.3
  • 35
    • 0027225783 scopus 로고
    • A compilation of large subunit (23S and 23S-like) ribosomal RNA structures
    • Gutell R.R., Gray M.W.S., and chnare M.N. A compilation of large subunit (23S and 23S-like) ribosomal RNA structures. Nucl. Acids Res. 21 (1993) 3055-3074
    • (1993) Nucl. Acids Res. , vol.21 , pp. 3055-3074
    • Gutell, R.R.1    Gray, M.W.S.2    chnare, M.N.3
  • 36
    • 0037079666 scopus 로고    scopus 로고
    • RT-PCR analysis of 5′ to 3′-end-ligated mRNAs identifies the extremities of cox2 transcripts in pea mitochondria
    • Kuhn J., and Binder S. RT-PCR analysis of 5′ to 3′-end-ligated mRNAs identifies the extremities of cox2 transcripts in pea mitochondria. Nucl. Acids Res. 30 (2002) 439-446
    • (2002) Nucl. Acids Res. , vol.30 , pp. 439-446
    • Kuhn, J.1    Binder, S.2
  • 38
    • 0029968249 scopus 로고    scopus 로고
    • Expression of a continuous open reading frame encoding subunits 1 and 2 of cytochrome c oxidase in the mitochondrial DNA of Acanthamoeba castellanii
    • Lonergan K.M., and Gray M.W. Expression of a continuous open reading frame encoding subunits 1 and 2 of cytochrome c oxidase in the mitochondrial DNA of Acanthamoeba castellanii. J. Mol. Biol. 257 (1996) 1019-1030
    • (1996) J. Mol. Biol. , vol.257 , pp. 1019-1030
    • Lonergan, K.M.1    Gray, M.W.2
  • 39
    • 33748598232 scopus 로고    scopus 로고
    • Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote
    • Eisen J.A., Coyne R.S., Wu M., Wu D., Thiagarajan M., Wortman J.R., et al. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. PLoS Biol. 4 (2006) e286
    • (2006) PLoS Biol. , vol.4
    • Eisen, J.A.1    Coyne, R.S.2    Wu, M.3    Wu, D.4    Thiagarajan, M.5    Wortman, J.R.6
  • 40
    • 1242314743 scopus 로고    scopus 로고
    • Functional polypeptides can be synthesized from human mitochondrial transcripts lacking termination codons
    • Chrzanowska-Lightowlers Z.M., Temperley R.J., Smith P.M., Seneca S.H., and Lightowlers R.N. Functional polypeptides can be synthesized from human mitochondrial transcripts lacking termination codons. Biochem. J. 377 (2004) 725-731
    • (2004) Biochem. J. , vol.377 , pp. 725-731
    • Chrzanowska-Lightowlers, Z.M.1    Temperley, R.J.2    Smith, P.M.3    Seneca, S.H.4    Lightowlers, R.N.5
  • 41
    • 0019444843 scopus 로고
    • tRNA punctuation model of RNA processing in human mitochondria
    • Ojala D., Montoya J., and Attardi G. tRNA punctuation model of RNA processing in human mitochondria. Nature 290 (1981) 470-474
    • (1981) Nature , vol.290 , pp. 470-474
    • Ojala, D.1    Montoya, J.2    Attardi, G.3
  • 42
    • 0027055653 scopus 로고
    • Mitochondrial genomes of the ciliates
    • Cummings D.J. Mitochondrial genomes of the ciliates. Int. Rev. Cytol. 141 (1992) 1-64
    • (1992) Int. Rev. Cytol. , vol.141 , pp. 1-64
    • Cummings, D.J.1
  • 43
    • 0042666874 scopus 로고    scopus 로고
    • Morphostasis in alveolate evolution
    • Leander B.S., and Keeling P.J. Morphostasis in alveolate evolution. Trends Ecol. Evol. 18 (2003) 395-402
    • (2003) Trends Ecol. Evol. , vol.18 , pp. 395-402
    • Leander, B.S.1    Keeling, P.J.2
  • 45
    • 25444458848 scopus 로고    scopus 로고
    • AutoFACT: an automatic functional annotation and classification tool
    • Koski L.B., Gray M.W., Lang B.F., and Burger G. AutoFACT: an automatic functional annotation and classification tool. BMC Bioinformat. 6 (2005) 151
    • (2005) BMC Bioinformat. , vol.6 , pp. 151
    • Koski, L.B.1    Gray, M.W.2    Lang, B.F.3    Burger, G.4
  • 46
    • 33750084191 scopus 로고    scopus 로고
    • Alveolate and chlorophycean mitochondrial cox2 genes split twice independently
    • Waller R.F., and Keeling P.J. Alveolate and chlorophycean mitochondrial cox2 genes split twice independently. Gene 383 (2006) 33-37
    • (2006) Gene , vol.383 , pp. 33-37
    • Waller, R.F.1    Keeling, P.J.2
  • 48
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 49
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 50
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies
    • Strimmer K., and von Haeseler A. Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13 (1996) 964-969
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 964-969
    • Strimmer, K.1    von Haeseler, A.2
  • 51
    • 0033984609 scopus 로고    scopus 로고
    • Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction
    • Bruno W.J., Socci N.D., and Halpern A.L. Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction. Mol. Biol. Evol. 17 (2000) 189-197
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 189-197
    • Bruno, W.J.1    Socci, N.D.2    Halpern, A.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.