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Volumn 10, Issue , 2010, Pages

The Dunaliella salina organelle genomes: Large sequences, inflated with intronic and intergenic DNA

Author keywords

[No Author keywords available]

Indexed keywords

ALGAE; CHLAMYDOMONADALES; CHLAMYDOMONAS REINHARDTII; CHLOROPHYCEAE; CHLOROPHYTA; DUNALIELLA SALINA; EUKARYOTA; VOLVOX;

EID: 77951950846     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-10-83     Document Type: Article
Times cited : (91)

References (72)
  • 1
    • 0003883780 scopus 로고
    • Organisation et développement du Dunaliella, nouveau genre de Volvocacée-Polyblépharidée
    • Teodoresco EC. Organisation et développement du Dunaliella, nouveau genre de Volvocacée-Polyblépharidée. Beih Bot Zentralblatt Bd 18 Abt 1905, 1:215-232.
    • (1905) Beih Bot Zentralblatt Bd 18 Abt , vol.1 , pp. 215-232
    • Teodoresco, E.C.1
  • 2
    • 33750517600 scopus 로고    scopus 로고
    • A hundred years of Dunaliella research: 1905-2005
    • 10.1186/1746-1448-1-2, 1224875, 16176593
    • Oren A. A hundred years of Dunaliella research: 1905-2005. Saline Syst 2005, 1:2. 10.1186/1746-1448-1-2, 1224875, 16176593.
    • (2005) Saline Syst , vol.1 , pp. 2
    • Oren, A.1
  • 3
    • 79959838854 scopus 로고    scopus 로고
    • History, distribution, and habitats of algae of the genus Dunaliella Teodoresco (Chlorophyceae)
    • Enfield, New Hampshire, USA: Science Publishers, Ben-Amotz A, Polle JEW, Rao DVS
    • Polle JEW, Tran D, Ben-Amotz A. History, distribution, and habitats of algae of the genus Dunaliella Teodoresco (Chlorophyceae). The Alga Dunaliella: Biodiversity, Physiology, Genomics, and Biotechnology 2009, 1-14. Enfield, New Hampshire, USA: Science Publishers, Ben-Amotz A, Polle JEW, Rao DVS.
    • (2009) The Alga Dunaliella: Biodiversity, Physiology, Genomics, and Biotechnology , pp. 1-14
    • Polle, J.E.W.1    Tran, D.2    Ben-Amotz, A.3
  • 4
    • 66849125910 scopus 로고    scopus 로고
    • Dunaliella biotechnology: methods and applications
    • 10.1111/j.1365-2672.2009.04153.x, 19245408
    • Tafresh AH, Shariati M. Dunaliella biotechnology: methods and applications. J Appl Microbiol 2009, 107:14-35. 10.1111/j.1365-2672.2009.04153.x, 19245408.
    • (2009) J Appl Microbiol , vol.107 , pp. 14-35
    • Tafresh, A.H.1    Shariati, M.2
  • 5
    • 84985222643 scopus 로고
    • Accumulation of β-carotene in halotolerant algae: Purification and characterization of β-carotene-rich globules from Dunaliella bardawil (Chlorophyceae)
    • Ben-Amotz A, Katz A, Avron M. Accumulation of β-carotene in halotolerant algae: Purification and characterization of β-carotene-rich globules from Dunaliella bardawil (Chlorophyceae). J Phycol 1982, 18:529-537.
    • (1982) J Phycol , vol.18 , pp. 529-537
    • Ben-Amotz, A.1    Katz, A.2    Avron, M.3
  • 6
    • 0028888623 scopus 로고
    • Isolation and characterization of a protein associated with carotene globules in the alga Dunaliella bardawil
    • 157547, 12228570
    • Katz A, Jiménez C, Pick U. Isolation and characterization of a protein associated with carotene globules in the alga Dunaliella bardawil. Plant Physiol 1995, 108:1657-1664. 157547, 12228570.
    • (1995) Plant Physiol , vol.108 , pp. 1657-1664
    • Katz, A.1    Jiménez, C.2    Pick, U.3
  • 7
    • 1842350777 scopus 로고
    • The mass culture of Dunaliella salina for β-carotene: from pilot plant to production plant
    • Moulton TP, Borowitzka LJ, Vincent DJ. The mass culture of Dunaliella salina for β-carotene: from pilot plant to production plant. Hydrobiologia 1987, 151/152:99-105.
    • (1987) Hydrobiologia , vol.151-152 , pp. 99-105
    • Moulton, T.P.1    Borowitzka, L.J.2    Vincent, D.J.3
  • 8
    • 33748447108 scopus 로고    scopus 로고
    • Industrial production of microalgal cell-mass and secondary products - major industrial species
    • Oxford, UK: Blackwell Publishing, Richmond A
    • Ben-Amotz A. Industrial production of microalgal cell-mass and secondary products - major industrial species. Handbook of Microalgal Culture: Biotechnology and Applied Phycology 2003, 273-280. Oxford, UK: Blackwell Publishing, Richmond A.
    • (2003) Handbook of Microalgal Culture: Biotechnology and Applied Phycology , pp. 273-280
    • Ben-Amotz, A.1
  • 10
    • 0003865434 scopus 로고
    • Dunaliella: Physiology, Biochemistry, and Biotechnology
    • Boca Raton, Florida, USA: CRC Press Inc
    • Avron M, Ben-Amotz A. Dunaliella: Physiology, Biochemistry, and Biotechnology. 1992, Boca Raton, Florida, USA: CRC Press Inc.
    • (1992)
    • Avron, M.1    Ben-Amotz, A.2
  • 11
    • 2442529788 scopus 로고    scopus 로고
    • Taming plastids for a green future
    • 10.1016/j.tibtech.2004.03.005, 15158061
    • Bock R, Khan MS. Taming plastids for a green future. Trends in Biotechnology 2004, 22:311-318. 10.1016/j.tibtech.2004.03.005, 15158061.
    • (2004) Trends in Biotechnology , vol.22 , pp. 311-318
    • Bock, R.1    Khan, M.S.2
  • 12
    • 32144445913 scopus 로고    scopus 로고
    • Isolation and characterization of components of the Dunaliella tertiolecta chloroplast genome
    • Walker TL, Black D, Becker DK, Dale JL, Collet C. Isolation and characterization of components of the Dunaliella tertiolecta chloroplast genome. J Appl Phycol 2005, 17:495-508.
    • (2005) J Appl Phycol , vol.17 , pp. 495-508
    • Walker, T.L.1    Black, D.2    Becker, D.K.3    Dale, J.L.4    Collet, C.5
  • 13
    • 38549102100 scopus 로고    scopus 로고
    • Optimization of recombinant protein expression in the chloroplasts of green algae
    • full_text, 18161493
    • Fletcher SP, Muto M, Mayfield SP. Optimization of recombinant protein expression in the chloroplasts of green algae. Adv Exp Med Biol 2007, 616:90-98. full_text, 18161493.
    • (2007) Adv Exp Med Biol , vol.616 , pp. 90-98
    • Fletcher, S.P.1    Muto, M.2    Mayfield, S.P.3
  • 14
    • 37249014420 scopus 로고    scopus 로고
    • Chloroplast vector systems for biotechnology applications
    • 10.1104/pp.107.106690, 2151729, 18056863
    • Verma D, Daniell H. Chloroplast vector systems for biotechnology applications. Plant Physiol 2007, 145:1129-1143. 10.1104/pp.107.106690, 2151729, 18056863.
    • (2007) Plant Physiol , vol.145 , pp. 1129-1143
    • Verma, D.1    Daniell, H.2
  • 15
    • 38549144272 scopus 로고    scopus 로고
    • Tools and techniques for chloroplast transformation of Chlamydomonas
    • full_text, 18161489
    • Purton S. Tools and techniques for chloroplast transformation of Chlamydomonas. Adv Exp Med Biol 2007, 616:34-45. full_text, 18161489.
    • (2007) Adv Exp Med Biol , vol.616 , pp. 34-45
    • Purton, S.1
  • 16
    • 53049102292 scopus 로고    scopus 로고
    • A green light for engineered algae: redirecting metabolism to fuel a biotechnology revolution
    • Rosenberg JN, Oyler GA, Wilkinson L, Betenbaugh MJ. A green light for engineered algae: redirecting metabolism to fuel a biotechnology revolution. Curr Opin in Biotech 2008, 19:430-436.
    • (2008) Curr Opin in Biotech , vol.19 , pp. 430-436
    • Rosenberg, J.N.1    Oyler, G.A.2    Wilkinson, L.3    Betenbaugh, M.J.4
  • 18
    • 0025766849 scopus 로고
    • Transgenic expression of aminoglycoside adenine transferase in the chloroplast: a selectable marker for site-directed transformation of Chlamydomonas
    • 10.1093/nar/19.15.4083, 328544, 1651475
    • Goldschmidt-Clermont M. Transgenic expression of aminoglycoside adenine transferase in the chloroplast: a selectable marker for site-directed transformation of Chlamydomonas. Nucleic Acids Res 1991, 19:4083-4089. 10.1093/nar/19.15.4083, 328544, 1651475.
    • (1991) Nucleic Acids Res , vol.19 , pp. 4083-4089
    • Goldschmidt-Clermont, M.1
  • 19
    • 1542368230 scopus 로고    scopus 로고
    • Plastid transformation in higher plants
    • 10.1146/annurev.arplant.55.031903.141633, 15377222
    • Maliga P. Plastid transformation in higher plants. Annu Rev Plant Biol 2004, 55:289-313. 10.1146/annurev.arplant.55.031903.141633, 15377222.
    • (2004) Annu Rev Plant Biol , vol.55 , pp. 289-313
    • Maliga, P.1
  • 20
    • 44949138125 scopus 로고    scopus 로고
    • Molecular systematics of Volvocales (Chlorophyceae, Chlorophyta) based on exhaustive 18S rRNA phylogenetic analyses
    • 10.1016/j.ympev.2008.03.016, 18430591
    • Nakada T, Misawa K, Nozaki H. Molecular systematics of Volvocales (Chlorophyceae, Chlorophyta) based on exhaustive 18S rRNA phylogenetic analyses. Mol Phylogenet Evol 2008, 48:281-291. 10.1016/j.ympev.2008.03.016, 18430591.
    • (2008) Mol Phylogenet Evol , vol.48 , pp. 281-291
    • Nakada, T.1    Misawa, K.2    Nozaki, H.3
  • 21
    • 79959853339 scopus 로고    scopus 로고
    • Development of genetics and molecular tool kits for species of the unicellular green alga Dunaliella (Chlorophyta)
    • Enfield, New Hampshire, USA: Science Publishers, Ben-Amotz A, Polle JEW, Rao DVS
    • Polle JEW, Qin S. Development of genetics and molecular tool kits for species of the unicellular green alga Dunaliella (Chlorophyta). The Alga Dunaliella: Biodiversity, Physiology, Genomics, and Biotechnology 2009, 403-422. Enfield, New Hampshire, USA: Science Publishers, Ben-Amotz A, Polle JEW, Rao DVS.
    • (2009) The Alga Dunaliella: Biodiversity, Physiology, Genomics, and Biotechnology , pp. 403-422
    • Polle, J.E.W.1    Qin, S.2
  • 22
    • 79959813057 scopus 로고    scopus 로고
    • United States Department of Energy Joint Genome Institute
    • United States Department of Energy Joint Genome Institute. , http://www.jgi.doe.gov/
  • 23
    • 59449094424 scopus 로고    scopus 로고
    • Microalgae as a raw material for biofuels production
    • Gouveia L, Oliveira AC. Microalgae as a raw material for biofuels production. J Ind Microbiol Biot 2009, 36:269-274.
    • (2009) J Ind Microbiol Biot , vol.36 , pp. 269-274
    • Gouveia, L.1    Oliveira, A.C.2
  • 24
    • 67649487505 scopus 로고    scopus 로고
    • NCBI Trace Archives
    • NCBI Trace Archives. , http://www.ncbi.nlm.nih.gov/Traces/home/
  • 26
    • 17644368841 scopus 로고    scopus 로고
    • Green algae and the origin of land plants
    • Lewis LA, McCourt M. Green algae and the origin of land plants. Am J Bot 2004, 91:1535-1556.
    • (2004) Am J Bot , vol.91 , pp. 1535-1556
    • Lewis, L.A.1    McCourt, M.2
  • 27
    • 0002055259 scopus 로고
    • Dunaliella
    • Cambridge, UK: Cambridge University Press, Borowitzka MA, Borowitzka LJ
    • Borowitzka MA, Borowitzka LJ. Dunaliella . Microalgal Biotechnology 1988, 27-58. Cambridge, UK: Cambridge University Press, Borowitzka MA, Borowitzka LJ.
    • (1988) Microalgal Biotechnology , pp. 27-58
    • Borowitzka, M.A.1    Borowitzka, L.J.2
  • 28
    • 34548438059 scopus 로고    scopus 로고
    • The taxonomy of the genus Dunaliella (Chlorophyta, Dunaliellales) with emphasis on the marine and halophilic species
    • Borowitzka MA, Siva C. The taxonomy of the genus Dunaliella (Chlorophyta, Dunaliellales) with emphasis on the marine and halophilic species. J Appl Phycol 2007, 19:567-590.
    • (2007) J Appl Phycol , vol.19 , pp. 567-590
    • Borowitzka, M.A.1    Siva, C.2
  • 29
    • 0024300787 scopus 로고
    • Organization and expression of algal (Chlamydomonas reinhardtii) mitochondrial DNA
    • Gray MW, Boer PH. Organization and expression of algal (Chlamydomonas reinhardtii) mitochondrial DNA. Philos T Roy Soc B 1988, 319:135-147.
    • (1988) Philos T Roy Soc B , vol.319 , pp. 135-147
    • Gray, M.W.1    Boer, P.H.2
  • 30
    • 0025096489 scopus 로고
    • Mitochondrial DNA of Chlamydomonas reinhardtii: the gene for apocytochrome b and the complete functional map of the 15.8 kb DNA
    • Michaelis G, Vahrenholz C, Pratje E. Mitochondrial DNA of Chlamydomonas reinhardtii: the gene for apocytochrome b and the complete functional map of the 15.8 kb DNA. Mol Gen Genet 1990, 223:211-216.
    • (1990) Mol Gen Genet , vol.223 , pp. 211-216
    • Michaelis, G.1    Vahrenholz, C.2    Pratje, E.3
  • 31
    • 0031884735 scopus 로고    scopus 로고
    • Complete sequence of the mitochondrial DNA of Chlamydomonas eugametos
    • 10.1023/A:1005995718091, 9484440
    • Denovan-Wright EM, Nedelcu AM, Lee RW. Complete sequence of the mitochondrial DNA of Chlamydomonas eugametos. Plant Mol Biol 1998, 36:285-295. 10.1023/A:1005995718091, 9484440.
    • (1998) Plant Mol Biol , vol.36 , pp. 285-295
    • Denovan-Wright, E.M.1    Nedelcu, A.M.2    Lee, R.W.3
  • 32
    • 0031665387 scopus 로고    scopus 로고
    • The mitochondrial genome of Chlorogonium elongatum inferred from the complete sequence
    • 10.1007/PL00006400, 9767688
    • Kroymann J, Zetsche K. The mitochondrial genome of Chlorogonium elongatum inferred from the complete sequence. J Mol Evol 1998, 47:431-440. 10.1007/PL00006400, 9767688.
    • (1998) J Mol Evol , vol.47 , pp. 431-440
    • Kroymann, J.1    Zetsche, K.2
  • 33
    • 0035986910 scopus 로고    scopus 로고
    • Mitochondrial genome of the colorless green alga Polytomella parva: two linear DNA molecules with homologous inverted repeat termini
    • Fan J, Lee RW. Mitochondrial genome of the colorless green alga Polytomella parva: two linear DNA molecules with homologous inverted repeat termini. Mol Biol Evol 2002, 19:999-1007.
    • (2002) Mol Biol Evol , vol.19 , pp. 999-1007
    • Fan, J.1    Lee, R.W.2
  • 34
    • 0036845754 scopus 로고    scopus 로고
    • The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats
    • 10.1105/tpc.006155, 153795, 12417694
    • Maul JE, Lilly JW, Cui L, dePamphilis CW, Miller W, Harris EH, Stern DB. The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats. Plant Cell 2002, 14:2659-2679. 10.1105/tpc.006155, 153795, 12417694.
    • (2002) Plant Cell , vol.14 , pp. 2659-2679
    • Maul, J.E.1    Lilly, J.W.2    Cui, L.3    dePamphilis, C.W.4    Miller, W.5    Harris, E.H.6    Stern, D.B.7
  • 35
    • 34247871378 scopus 로고    scopus 로고
    • Mitochondrial genome sequence evolution in Chlamydomonas
    • 10.1534/genetics.106.063156, 1800605, 17151253
    • Popescu CE, Lee RW. Mitochondrial genome sequence evolution in Chlamydomonas. Genetics 2007, 175:819-826. 10.1534/genetics.106.063156, 1800605, 17151253.
    • (2007) Genetics , vol.175 , pp. 819-826
    • Popescu, C.E.1    Lee, R.W.2
  • 36
    • 39749186643 scopus 로고    scopus 로고
    • Mitochondrial genome of the colorless green alga Polytomella capuana: a linear molecule with an unprecedented GC content
    • 10.1093/molbev/msm245, 18222946
    • Smith DR, Lee RW. Mitochondrial genome of the colorless green alga Polytomella capuana: a linear molecule with an unprecedented GC content. Mol Biol Evol 2008, 25:487-496. 10.1093/molbev/msm245, 18222946.
    • (2008) Mol Biol Evol , vol.25 , pp. 487-496
    • Smith, D.R.1    Lee, R.W.2
  • 37
    • 65249087231 scopus 로고    scopus 로고
    • The mitochondrial and plastid genomes of Volvox carteri: bloated molecules rich in repetitive DNA
    • 10.1186/1471-2164-10-132, 2670323, 19323823
    • Smith DR, Lee RW. The mitochondrial and plastid genomes of Volvox carteri: bloated molecules rich in repetitive DNA. BMC Genomics 2009, 10:132. 10.1186/1471-2164-10-132, 2670323, 19323823.
    • (2009) BMC Genomics , vol.10 , pp. 132
    • Smith, D.R.1    Lee, R.W.2
  • 38
    • 77957238416 scopus 로고    scopus 로고
    • Low nucleotide diversity for the expanded organelle and nuclear genomes of Volvox carteri supports the mutational-hazard hypothesis
    • Smith DR, Lee RW. Low nucleotide diversity for the expanded organelle and nuclear genomes of Volvox carteri supports the mutational-hazard hypothesis. Mol Biol Evol
    • Mol Biol Evol
    • Smith, D.R.1    Lee, R.W.2
  • 39
    • 0028372047 scopus 로고
    • Conserved gene clusters in the highly rearranged chloroplast genomes of Chlamydomonas moewusii and Chlamydomonas reinhardtii
    • 10.1007/BF00023556, 8155879
    • Boudreau E, Otis C, Turmel M. Conserved gene clusters in the highly rearranged chloroplast genomes of Chlamydomonas moewusii and Chlamydomonas reinhardtii. Plant Mol Biol 1994, 24:585-602. 10.1007/BF00023556, 8155879.
    • (1994) Plant Mol Biol , vol.24 , pp. 585-602
    • Boudreau, E.1    Otis, C.2    Turmel, M.3
  • 40
    • 0029152633 scopus 로고
    • Gene rearrangements in Chlamydomonas chloroplast DNAs are accounted for by inversions and by the expansion/contraction of the inverted repeat
    • 10.1007/BF00020189, 7888624
    • Boudreau E, Turmel M. Gene rearrangements in Chlamydomonas chloroplast DNAs are accounted for by inversions and by the expansion/contraction of the inverted repeat. Plant Mol Biol 1995, 27:351-364. 10.1007/BF00020189, 7888624.
    • (1995) Plant Mol Biol , vol.27 , pp. 351-364
    • Boudreau, E.1    Turmel, M.2
  • 41
    • 0030061828 scopus 로고    scopus 로고
    • Extensive gene rearrangements in the chloroplast DNAs of Chlamydomonas species featuring multiple dispersed repeats
    • Boudreau E, Turmel M. Extensive gene rearrangements in the chloroplast DNAs of Chlamydomonas species featuring multiple dispersed repeats. Mol Biol Evol 1996, 13:233-243.
    • (1996) Mol Biol Evol , vol.13 , pp. 233-243
    • Boudreau, E.1    Turmel, M.2
  • 42
    • 0027359351 scopus 로고
    • Mitochondrial DNA of Chlamydomonas reinhardtii: the structure of the ends of the linear 15.8-kb genome suggests mechanisms for DNA replication
    • 10.1007/BF00351798, 8221933
    • Vahrenholz C, Riemen G, Pratje E, Dujon B, Michaelis G. Mitochondrial DNA of Chlamydomonas reinhardtii: the structure of the ends of the linear 15.8-kb genome suggests mechanisms for DNA replication. Curr Genet 1993, 24:241-247. 10.1007/BF00351798, 8221933.
    • (1993) Curr Genet , vol.24 , pp. 241-247
    • Vahrenholz, C.1    Riemen, G.2    Pratje, E.3    Dujon, B.4    Michaelis, G.5
  • 43
    • 73349134993 scopus 로고    scopus 로고
    • Mitochondrial DNA in the Oogamochlamys clade (Chlorophyceae): high GC content and unique genome architecture for green algae
    • Borza T, Redmond EK, Laflamme M, Lee RW. Mitochondrial DNA in the Oogamochlamys clade (Chlorophyceae): high GC content and unique genome architecture for green algae. J Phycol 2009, 45:1323-1334.
    • (2009) J Phycol , vol.45 , pp. 1323-1334
    • Borza, T.1    Redmond, E.K.2    Laflamme, M.3    Lee, R.W.4
  • 44
    • 33644824389 scopus 로고    scopus 로고
    • Identification of three distinct Polytomella lineages based on mitochondrial DNA features
    • 10.1111/j.1550-7408.2005.00079.x, 16579809
    • Mallet M, Lee RW. Identification of three distinct Polytomella lineages based on mitochondrial DNA features. J Eukaryot Microbiol 2006, 53:79-84. 10.1111/j.1550-7408.2005.00079.x, 16579809.
    • (2006) J Eukaryot Microbiol , vol.53 , pp. 79-84
    • Mallet, M.1    Lee, R.W.2
  • 45
    • 0031895184 scopus 로고    scopus 로고
    • Contrasting mitochondrial genome organizations and sequence affiliations among green algae: potential factors, mechanisms, and evolutionary scenarios
    • Nedelcu AM. Contrasting mitochondrial genome organizations and sequence affiliations among green algae: potential factors, mechanisms, and evolutionary scenarios. J Phycol 1998, 34:16-28.
    • (1998) J Phycol , vol.34 , pp. 16-28
    • Nedelcu, A.M.1
  • 46
    • 67649519425 scopus 로고    scopus 로고
    • Nucleotide diversity of the Chlamydomonas reinhardtii plastid genome: addressing the mutational-hazard hypothesis
    • 10.1186/1471-2148-9-120, 2698885, 19473533
    • Smith DR, Lee RW. Nucleotide diversity of the Chlamydomonas reinhardtii plastid genome: addressing the mutational-hazard hypothesis. BMC Evol Biol 2009, 9:120. 10.1186/1471-2148-9-120, 2698885, 19473533.
    • (2009) BMC Evol Biol , vol.9 , pp. 120
    • Smith, D.R.1    Lee, R.W.2
  • 47
    • 33748952472 scopus 로고    scopus 로고
    • Distinctive architecture of the chloroplast genome in the chlorophycean green alga Stigeoclonium helveticum
    • 10.1007/s00438-006-0156-2, 16944205
    • Bélanger AS, Brouard JS, Charlesbois P, Otis C, Lemieux C, Turmel M. Distinctive architecture of the chloroplast genome in the chlorophycean green alga Stigeoclonium helveticum. Mol Genet Genomics 2006, 276:464-477. 10.1007/s00438-006-0156-2, 16944205.
    • (2006) Mol Genet Genomics , vol.276 , pp. 464-477
    • Bélanger, A.S.1    Brouard, J.S.2    Charlesbois, P.3    Otis, C.4    Lemieux, C.5    Turmel, M.6
  • 48
    • 33749336062 scopus 로고    scopus 로고
    • The complete chloroplast genome sequence of Pelargonium × hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants
    • 10.1093/molbev/msl089, 16916942
    • Chumley TW, Palmer JD, Mower JP, Fourcade HM, Calie PJ, Boore JL, Jansen RK. The complete chloroplast genome sequence of Pelargonium × hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants. Mol Biol Evol 2006, 23:2175-2190. 10.1093/molbev/msl089, 16916942.
    • (2006) Mol Biol Evol , vol.23 , pp. 2175-2190
    • Chumley, T.W.1    Palmer, J.D.2    Mower, J.P.3    Fourcade, H.M.4    Calie, P.J.5    Boore, J.L.6    Jansen, R.K.7
  • 49
    • 0032524384 scopus 로고    scopus 로고
    • Analyzing genomes with cumulative skew diagrams
    • 10.1093/nar/26.10.2286, 147580, 9580676
    • Grigoriev A. Analyzing genomes with cumulative skew diagrams. Nucleic Acids Res 1998, 26:2286-2290. 10.1093/nar/26.10.2286, 147580, 9580676.
    • (1998) Nucleic Acids Res , vol.26 , pp. 2286-2290
    • Grigoriev, A.1
  • 50
    • 0028098026 scopus 로고
    • A 7.1 kb linear DNA molecule of Theileria parva has scrambled rDNA sequences and open reading frames for mitochondrially endcoded proteins
    • 394889, 8112303
    • Kairo A, Fairlamb AH, Gobright E, Nene V. A 7.1 kb linear DNA molecule of Theileria parva has scrambled rDNA sequences and open reading frames for mitochondrially endcoded proteins. EMBO J 1994, 13:898-905. 394889, 8112303.
    • (1994) EMBO J , vol.13 , pp. 898-905
    • Kairo, A.1    Fairlamb, A.H.2    Gobright, E.3    Nene, V.4
  • 51
    • 34547653667 scopus 로고    scopus 로고
    • Organization of the mitochondrial genome in the dinoflagellate Amphidinium carterae
    • 10.1093/molbev/msm074, 17440175
    • Nash EA, Barbrook AC, Edwards-Stuart RK, Bernhardt K, Howe CJ, Nisbet RER. Organization of the mitochondrial genome in the dinoflagellate Amphidinium carterae. Mol Biol Evol 2007, 24:1528-1536. 10.1093/molbev/msm074, 17440175.
    • (2007) Mol Biol Evol , vol.24 , pp. 1528-1536
    • Nash, E.A.1    Barbrook, A.C.2    Edwards-Stuart, R.K.3    Bernhardt, K.4    Howe, C.J.5    Nisbet, R.E.R.6
  • 52
    • 44849098142 scopus 로고    scopus 로고
    • Nucleotide diversity in the mitochondrial and nuclear compartments of Chlamydomonas reinhardtii: investigating the origins of genome architecture
    • 10.1186/1471-2148-8-156, 2412866, 18495022
    • Smith DR, Lee RW. Nucleotide diversity in the mitochondrial and nuclear compartments of Chlamydomonas reinhardtii: investigating the origins of genome architecture. BMC Evol Biol 2008, 8:156. 10.1186/1471-2148-8-156, 2412866, 18495022.
    • (2008) BMC Evol Biol , vol.8 , pp. 156
    • Smith, D.R.1    Lee, R.W.2
  • 53
    • 33645214213 scopus 로고    scopus 로고
    • Mutation pressure and the evolution of organelle genomic architecture
    • 10.1126/science.1118884, 16556832
    • Lynch M, Koskella B, Schaack S. Mutation pressure and the evolution of organelle genomic architecture. Science 2006, 311:1727-1730. 10.1126/science.1118884, 16556832.
    • (2006) Science , vol.311 , pp. 1727-1730
    • Lynch, M.1    Koskella, B.2    Schaack, S.3
  • 54
    • 0011348284 scopus 로고
    • Physical mapping of differences between the chloroplast DNAs of the interfertile algae Chlamydomonas eugametos and Chlamydomonas moewusii
    • Turmel M, Bellemare G, Lemieux C. Physical mapping of differences between the chloroplast DNAs of the interfertile algae Chlamydomonas eugametos and Chlamydomonas moewusii. Curr Genet 1987, 11:543-552.
    • (1987) Curr Genet , vol.11 , pp. 543-552
    • Turmel, M.1    Bellemare, G.2    Lemieux, C.3
  • 55
    • 0030971363 scopus 로고    scopus 로고
    • Fragmented and scrambled mitochondrial ribosomal RNA coding regions among green algae: a model for their origin and evolution
    • Nedelcu AM. Fragmented and scrambled mitochondrial ribosomal RNA coding regions among green algae: a model for their origin and evolution. Mol Biol Evol 1997, 14:506-517.
    • (1997) Mol Biol Evol , vol.14 , pp. 506-517
    • Nedelcu, A.M.1
  • 56
    • 0031867074 scopus 로고    scopus 로고
    • Short repetitive sequences in green algal mitochondrial genomes: potential roles in mitochondrial genome evolution
    • Nedelcu AM, Lee RW. Short repetitive sequences in green algal mitochondrial genomes: potential roles in mitochondrial genome evolution. Mol Biol Evol 1998, 15:690-701.
    • (1998) Mol Biol Evol , vol.15 , pp. 690-701
    • Nedelcu, A.M.1    Lee, R.W.2
  • 57
    • 0027999209 scopus 로고
    • PetD mRNA maturation in Chlamydomonas reinhardtii chloroplasts: role of 5' endonucleolytic processing
    • 359145, 8065351
    • Sakamoto W, Sturm NR, Kindle KL, Stern DB. petD mRNA maturation in Chlamydomonas reinhardtii chloroplasts: role of 5' endonucleolytic processing. Mol Cell Biol 1994, 14:6180-6186. 359145, 8065351.
    • (1994) Mol Cell Biol , vol.14 , pp. 6180-6186
    • Sakamoto, W.1    Sturm, N.R.2    Kindle, K.L.3    Stern, D.B.4
  • 58
    • 2442587472 scopus 로고    scopus 로고
    • Short dispersed repeats in the Chlamydomonas chloroplast genome are collocated with sites for mRNA 3' end formation
    • 10.1007/s00294-004-0487-7, 14760508
    • Jiao HS, Hicks A, Simpson C, Stern DB. Short dispersed repeats in the Chlamydomonas chloroplast genome are collocated with sites for mRNA 3' end formation. Curr Genet 2004, 45:311-322. 10.1007/s00294-004-0487-7, 14760508.
    • (2004) Curr Genet , vol.45 , pp. 311-322
    • Jiao, H.S.1    Hicks, A.2    Simpson, C.3    Stern, D.B.4
  • 59
    • 65349104518 scopus 로고    scopus 로고
    • Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions
    • 10.1007/s00239-008-9180-7, 19018585
    • Cai Z, Guisinger M, Kim HG, Ruck E, Blazier JC, McMurty V, Kuehl JV, Boore J, Jansen RK. Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions. J Mol Evol 2008, 67:696-704. 10.1007/s00239-008-9180-7, 19018585.
    • (2008) J Mol Evol , vol.67 , pp. 696-704
    • Cai, Z.1    Guisinger, M.2    Kim, H.G.3    Ruck, E.4    Blazier, J.C.5    McMurty, V.6    Kuehl, J.V.7    Boore, J.8    Jansen, R.K.9
  • 60
    • 50649097946 scopus 로고    scopus 로고
    • Group II introns in Eubacteria and Archaea: ORF-less introns and new varieties
    • 10.1261/rna.1056108, 2525955, 18676618
    • Simon DM, Clark N, McNeil BA, Johnson I, Pantuso D, Dai L, Chai D, Zimmerly S. Group II introns in Eubacteria and Archaea: ORF-less introns and new varieties. RNA 2008, 14:1704-1713. 10.1261/rna.1056108, 2525955, 18676618.
    • (2008) RNA , vol.14 , pp. 1704-1713
    • Simon, D.M.1    Clark, N.2    McNeil, B.A.3    Johnson, I.4    Pantuso, D.5    Dai, L.6    Chai, D.7    Zimmerly, S.8
  • 61
    • 49249098402 scopus 로고    scopus 로고
    • Survey of group I and group II introns in 29 sequenced genomes of the Bacillus cereus group: insights into their spread and evolution
    • Tourasse NJ, Kolstø AB. Survey of group I and group II introns in 29 sequenced genomes of the Bacillus cereus group: insights into their spread and evolution. Nucleic Acids Res 2008, 14:4529-4548.
    • (2008) Nucleic Acids Res , vol.14 , pp. 4529-4548
    • Tourasse, N.J.1    Kolstø, A.B.2
  • 62
    • 33847192548 scopus 로고    scopus 로고
    • Mitochondrial introns: a critical view
    • 10.1016/j.tig.2007.01.006, 17280737
    • Lang BF, Laforest MJ, Burger G. Mitochondrial introns: a critical view. Trends Genet 2007, 23:119-125. 10.1016/j.tig.2007.01.006, 17280737.
    • (2007) Trends Genet , vol.23 , pp. 119-125
    • Lang, B.F.1    Laforest, M.J.2    Burger, G.3
  • 64
    • 0025761166 scopus 로고
    • Short dispersed repeats localized in spacer regions of Chlamydomonas reinhardtii mitochondrial DNA
    • 10.1007/BF00355060, 1831072
    • Boer PH, Gray MW. Short dispersed repeats localized in spacer regions of Chlamydomonas reinhardtii mitochondrial DNA. Curr Genet 1991, 19:309-312. 10.1007/BF00355060, 1831072.
    • (1991) Curr Genet , vol.19 , pp. 309-312
    • Boer, P.H.1    Gray, M.W.2
  • 65
    • 67651115703 scopus 로고    scopus 로고
    • Improvement of efficiency of genetic transformation for Dunaliella salina by glass beads method
    • 10.1007/s11033-008-9333-1, 18792804
    • Feng S, Xue L, Liu H, Lu P. Improvement of efficiency of genetic transformation for Dunaliella salina by glass beads method. Mol Biol Rep 2009, 36:1433-1439. 10.1007/s11033-008-9333-1, 18792804.
    • (2009) Mol Biol Rep , vol.36 , pp. 1433-1439
    • Feng, S.1    Xue, L.2    Liu, H.3    Lu, P.4
  • 66
    • 0042701160 scopus 로고    scopus 로고
    • Culture Collection of Algae and Protozoa
    • Culture Collection of Algae and Protozoa. , http://www.ccap.ac.uk/
  • 67
    • 50049084794 scopus 로고    scopus 로고
    • A fragmented metazoan organellar genome: the two mitochondrial chromosomes of Hydra magnipapillata
    • 10.1186/1471-2164-9-350, 2518934, 18655725
    • Voigt O, Erpenbeck D, Wörheide G. A fragmented metazoan organellar genome: the two mitochondrial chromosomes of Hydra magnipapillata. BMC Genomics 2008, 9:350. 10.1186/1471-2164-9-350, 2518934, 18655725.
    • (2008) BMC Genomics , vol.9 , pp. 350
    • Voigt, O.1    Erpenbeck, D.2    Wörheide, G.3
  • 69
    • 1042304214 scopus 로고    scopus 로고
    • JDotter: a java interface to multiple dotplots generated by dotter
    • 10.1093/bioinformatics/btg406, 14734323
    • Brodie R, Roper RL, Upton C. JDotter: a java interface to multiple dotplots generated by dotter. Bioinformatics 2004, 20:279-281. 10.1093/bioinformatics/btg406, 14734323.
    • (2004) Bioinformatics , vol.20 , pp. 279-281
    • Brodie, R.1    Roper, R.L.2    Upton, C.3
  • 70
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • 10.1093/nar/gkg595, 169194, 12824337
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31:3406-3415. 10.1093/nar/gkg595, 169194, 12824337.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 71
    • 0033066718 scopus 로고    scopus 로고
    • REPuter: fast computation of maximal repeats in complete genomes
    • 10.1093/bioinformatics/15.5.426, 10366664
    • Kurtz S, Schleiermacher C. REPuter: fast computation of maximal repeats in complete genomes. Bioinformatics 1999, 15:426-427. 10.1093/bioinformatics/15.5.426, 10366664.
    • (1999) Bioinformatics , vol.15 , pp. 426-427
    • Kurtz, S.1    Schleiermacher, C.2
  • 72
    • 47749154648 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq) collection
    • NCBI Reference Sequence (RefSeq) collection. , http://www.ncbi.nlm.nih.gov/projects/RefSeq/


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.