메뉴 건너뛰기




Volumn 3, Issue SEP, 2012, Pages

Updating our view of organelle genome nucleotide landscape

Author keywords

Coccomyxa; GC content; Mitochondrial DNA; Plastid DNA; Polytomella; RNA editing; Selaginella

Indexed keywords

ANIMALIA; EUKARYOTA; POLYTOMELLA; SELAGINELLA; VIRIDIPLANTAE;

EID: 84876158905     PISSN: None     EISSN: 16648021     Source Type: Journal    
DOI: 10.3389/fgene.2012.00175     Document Type: Article
Times cited : (56)

References (82)
  • 2
    • 58349101981 scopus 로고    scopus 로고
    • The puzzle of plastid evolution
    • Archibald, J. M. (2009). The puzzle of plastid evolution. Curr. Biol. 19, R81-R88.
    • (2009) Curr. Biol. , vol.19
    • Archibald, J.M.1
  • 3
    • 33745662408 scopus 로고    scopus 로고
    • Production and scavenging of reactive oxygen species in chloroplasts and their functions
    • Asada, K. (2006). Production and scavenging of reactive oxygen species in chloroplasts and their functions. Plant Physiol. 141,391-396.
    • (2006) Plant Physiol , vol.141 , pp. 391-396
    • Asada, K.1
  • 5
    • 77953928286 scopus 로고    scopus 로고
    • Mitochondrial DNA, chloroplast DNA and the origins of development in eukaryotic organisms
    • Bendich, A. J. (2010). Mitochondrial DNA, chloroplast DNA and the origins of development in eukaryotic organisms. Biol. Direct 5, 42.
    • (2010) Biol. Direct , vol.5 , pp. 42
    • Bendich, A.J.1
  • 6
    • 0035671887 scopus 로고    scopus 로고
    • The inheritance of genes in mitochondria and chloroplasts: laws, mechanisms, and models
    • Birky, C. W. (2001). The inheritance of genes in mitochondria and chloroplasts: laws, mechanisms, and models. Annu. Rev. Genet. 35, 125-148.
    • (2001) Annu. Rev. Genet. , vol.35 , pp. 125-148
    • Birky, C.W.1
  • 8
    • 73349134993 scopus 로고    scopus 로고
    • Mitochondrial DNA in the Oog-amochlamys clade (Chlorophyceae): high GC content and unique genome architecture for green algae
    • Borza, T., Redmond, E. K., Laflamme, M., and Lee, R. W (2009). Mitochondrial DNA in the Oog-amochlamys clade (Chlorophyceae): high GC content and unique genome architecture for green algae. J. Phycol. 45, 1323-1334.
    • (2009) J. Phycol. , vol.45 , pp. 1323-1334
    • Borza, T.1    Redmond, E.K.2    Laflamme, M.3    Lee, R.W.4
  • 9
    • 70350560063 scopus 로고    scopus 로고
    • Complete mitochondrial genome sequences of three Nakaseomyces species reveal invasion by palin-dromic GC clusters and considerable size expansion
    • Bouchier, C., Ma, L., Créno, S., Dujon, B., and Fairhead, C. (2009). Complete mitochondrial genome sequences of three Nakaseomyces species reveal invasion by palin-dromic GC clusters and considerable size expansion. FEMS Yeast Res. 9, 1283-1292.
    • (2009) FEMS Yeast Res , vol.9 , pp. 1283-1292
    • Bouchier, C.1    Ma, L.2    Créno, S.3    Dujon, B.4    Fairhead, C.5
  • 11
    • 43149113681 scopus 로고    scopus 로고
    • Diagnosing mitochondrial DNA diversity: applications of a sentinel gene approach
    • Clare, E. L., Kerr, K. C. R., Königslöw, T. E., Wilson, J. J., and Hebert, P. D. N. (2008). Diagnosing mitochondrial DNA diversity: applications of a sentinel gene approach. J. Mol. Evol. 66, 362-367.
    • (2008) J. Mol. Evol. , vol.66 , pp. 362-367
    • Clare, E.L.1    Kerr, K.C.R.2    Königslöw, T.E.3    Wilson, J.J.4    Hebert, P.D.N.5
  • 12
    • 0024419064 scopus 로고
    • RNA editing in plant mitochondria
    • Covello, P. S., and Gray, M. W. (1989). RNA editing in plant mitochondria. Nature 341, 662-666.
    • (1989) Nature , vol.341 , pp. 662-666
    • Covello, P.S.1    Gray, M.W.2
  • 13
    • 77956367957 scopus 로고    scopus 로고
    • Epidemic disease decimates amphibian abundance, species diversity, and evolutionary history in the highlands of central Panama
    • Crawford, A. J., Lips, K. R., and Bermingham, E. (2010). Epidemic disease decimates amphibian abundance, species diversity, and evolutionary history in the highlands of central Panama. Proc. Natl. Acad. Sci. U.S.A. 107, 13777-13782.
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 13777-13782
    • Crawford, A.J.1    Lips, K.R.2    Bermingham, E.3
  • 14
    • 79551508554 scopus 로고    scopus 로고
    • Use of rbcL and trnL-F as a two-locus DNA barcode for identification of NW-European ferns: an ecological perspective
    • doi:10.1371/journal.pone.0016371
    • de Groot, G. A., During, H. J., Maas, J. W., Schneider, H., Vogel, J. C., and Erkens, R. H. J. (2011). Use of rbcL and trnL-F as a two-locus DNA barcode for identification of NW-European ferns: an ecological perspective. PLoS ONE 6, e16371. doi:10.1371/journal.pone.0016371
    • (2011) PLoS ONE , vol.6
    • de Groot, G.A.1    During, H.J.2    Maas, J.W.3    Schneider, H.4    Vogel, J.C.5    Erkens, R.H.J.6
  • 15
    • 0022478181 scopus 로고
    • The GC clusters of the mito-chondrial genome of yeast and their evolutionary origin
    • de Zamaroczy, M., and Bernardi, G. (1986). The GC clusters of the mito-chondrial genome of yeast and their evolutionary origin. Gene 41, 1-22.
    • (1986) Gene , vol.41 , pp. 1-22
    • De Zamaroczy, M.1    Bernardi, G.2
  • 16
    • 0023661289 scopus 로고
    • Preferential recombination between GC clusters in yeast mitochondrial DNA
    • Dieckmann,C.L.,and Gandy,B. (1987). Preferential recombination between GC clusters in yeast mitochondrial DNA. EMBOJ. 6, 4197-4203.
    • (1987) EMBOJ , vol.6 , pp. 4197-4203
    • Dieckmann, C.L.1    Gandy, B.2
  • 17
    • 56549086194 scopus 로고    scopus 로고
    • Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants
    • Drouin, G., Daoud, H., and Xia, J. (2008). Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants. Mol. Phy-logenet. Evol. 49, 827-831.
    • (2008) Mol. Phy-logenet. Evol. , vol.49 , pp. 827-831
    • Drouin, G.1    Daoud, H.2    Xia, J.3
  • 18
    • 70350236484 scopus 로고    scopus 로고
    • Biased gene conversion and the evolution of mammalian genomic landscapes
    • Duret, L., and Galtier, N. (2009). Biased gene conversion and the evolution of mammalian genomic landscapes. Annu. Rev. Genomics Hum. Genet. 10,285-311.
    • (2009) Annu. Rev. Genomics Hum. Genet. , vol.10 , pp. 285-311
    • Duret, L.1    Galtier, N.2
  • 19
    • 78650114014 scopus 로고    scopus 로고
    • Molecular species identification with rich floristic sampling: DNA barcoding the pteridophyte flora of Japan
    • doi:10.1371/journal.pone.0015136
    • Ebihara, A., Nitta, J. H., and Ito, M. (2010). Molecular species identification with rich floristic sampling: DNA barcoding the pteridophyte flora of Japan. PLoS ONE 5, e15136. doi:10.1371/journal.pone.0015136
    • (2010) PLoS ONE , vol.5
    • Ebihara, A.1    Nitta, J.H.2    Ito, M.3
  • 20
    • 0242318326 scopus 로고    scopus 로고
    • Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes
    • Faith, J. J., and Pollock, D. D. (2003). Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes. Genetics 165,735-745.
    • (2003) Genetics , vol.165 , pp. 735-745
    • Faith, J.J.1    Pollock, D.D.2
  • 21
    • 0033004743 scopus 로고    scopus 로고
    • Compositional bias may affect both DNA-based and protein-based phy-logenetic reconstructions
    • Foster, P. G., and Hickey, D. A. (1999). Compositional bias may affect both DNA-based and protein-based phy-logenetic reconstructions. J. Mol. Evol. 48, 284-290.
    • (1999) J. Mol. Evol. , vol.48 , pp. 284-290
    • Foster, P.G.1    Hickey, D.A.2
  • 22
    • 0032860238 scopus 로고    scopus 로고
    • Asymmetric substitution patterns: a review of possible underlying muta-tional or selective mechanisms
    • Frank, A. C., and Lobry, J. R. (1999). Asymmetric substitution patterns: a review of possible underlying muta-tional or selective mechanisms. Gene 238, 65-77.
    • (1999) Gene , vol.238 , pp. 65-77
    • Frank, A.C.1    Lobry, J.R.2
  • 23
    • 77954566307 scopus 로고    scopus 로고
    • The mitochondrial genome of the pathogenic yeast Candida subhashii: GC-rich linear DNA with a protein covalently attached to the 5' termini
    • Fricova, D., Valach, M., Farkas, Z., Pfeif-fer, I., Kucsera, J., Tomaska, L., and Nosek, J. (2010). The mitochondrial genome of the pathogenic yeast Candida subhashii: GC-rich linear DNA with a protein covalently attached to the 5' termini. Microbiology 156, 2153-2163.
    • (2010) Microbiology , vol.156 , pp. 2153-2163
    • Fricova, D.1    Valach, M.2    Farkas, Z.3    Pfeif-fer, I.4    Kucsera, J.5    Tomaska, L.6    Nosek, J.7
  • 24
    • 12344282043 scopus 로고    scopus 로고
    • A Comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods
    • Gibson, A. (2005). A Comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods. Mol. Biol. Evol. 22, 251-264.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 251-264
    • Gibson, A.1
  • 25
    • 77952492300 scopus 로고    scopus 로고
    • Molecular phylogeny and revision of the genus Netrium (Zygnematophyceae Streptophyta): Nucleotaenium gen
    • Gontcharov, A. A., and Melkonian, M. (2010). Molecular phylogeny and revision of the genus Netrium (Zygnematophyceae, Streptophyta): Nucleotaenium gen. nov. J. Phycol. 46, 346-362.
    • (2010) nov. J. Phycol. , vol.46 , pp. 346-362
    • Gontcharov, A.A.1    Melkonian, M.2
  • 26
    • 0033525788 scopus 로고    scopus 로고
    • Mitochondrial evolution
    • Gray, M. W., Burger, G., and Lang, B. F. (1999). Mitochondrial evolution. Science 283, 1476-1481.
    • (1999) Science , vol.283 , pp. 1476-1481
    • Gray, M.W.1    Burger, G.2    Lang, B.F.3
  • 28
    • 79953234083 scopus 로고    scopus 로고
    • Chloroplast genomes of photosynthetic eukary-otes
    • Green, B. R. (2011). Chloroplast genomes of photosynthetic eukary-otes. PlantJ. 66, 34-44.
    • (2011) PlantJ , vol.66 , pp. 34-44
    • Green, B.R.1
  • 29
    • 69849093397 scopus 로고    scopus 로고
    • A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii
    • Grewe, F., Viehoever, P., Weisshaar, B., and Knoop, V. (2009). A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii. Nucleic Acids Res. 37, 5093-5104.
    • (2009) Nucleic Acids Res , vol.37 , pp. 5093-5104
    • Grewe, F.1    Viehoever, P.2    Weisshaar, B.3    Knoop, V.4
  • 30
    • 0033103479 scopus 로고    scopus 로고
    • The interaction between plastocyanin and photosystem I is inefficient in transgenic Arabidopsis plants lacking the PSI-N subunit of photosystem
    • Haldrup, A., Naver, H., and Scheller, H. V. (1999). The interaction between plastocyanin and photosystem I is inefficient in transgenic Arabidopsis plants lacking the PSI-N subunit of photosystem. PlantJ. 17, 689-698.
    • (1999) PlantJ , vol.17 , pp. 689-698
    • Haldrup, A.1    Naver, H.2    Scheller, H.V.3
  • 31
    • 37249080252 scopus 로고    scopus 로고
    • Linear plasmids in plant mitochondria: peaceful coexistences or malicious invasions
    • Handa, H. (2008). Linear plasmids in plant mitochondria: peaceful coexistences or malicious invasions. Mitochondrion 8, 15-25.
    • (2008) Mitochondrion , vol.8 , pp. 15-25
    • Handa, H.1
  • 32
    • 79960100341 scopus 로고    scopus 로고
    • Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: the root of frequent plant mtDNA recombination in early tra-cheophytes
    • Hecht, J., Grewe, F., and Knoop, V. (2011). Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: the root of frequent plant mtDNA recombination in early tra-cheophytes. Genome Biol. Evol. 3, 344-358.
    • (2011) Genome Biol. Evol. , vol.3 , pp. 344-358
    • Hecht, J.1    Grewe, F.2    Knoop, V.3
  • 33
    • 27744509111 scopus 로고    scopus 로고
    • Sun-dasalanx (Sundasalangidae) is apro-genetic clupeiform, not a closely-related group of salangids (Osmer-iformes): mitogenomic evidence
    • Ishiguro, N. B., Miya, M., Inoue, J. G., and Nishida, M. (2005). Sun-dasalanx (Sundasalangidae) is apro-genetic clupeiform, not a closely-related group of salangids (Osmer-iformes): mitogenomic evidence. J. Fish Biol. 67,561-569.
    • (2005) J. Fish Biol. , vol.67 , pp. 561-569
    • Ishiguro, N.B.1    Miya, M.2    Inoue, J.G.3    Nishida, M.4
  • 34
    • 56449121204 scopus 로고    scopus 로고
    • Did RNA editing in plant organel-lar genomes originate under natural selection or through genetic drift
    • Jobson, R. W., and Qiu, Y. L. (2008). Did RNA editing in plant organel-lar genomes originate under natural selection or through genetic drift? Biol. Direct 3,43.
    • (2008) Biol Direct , vol.3 , pp. 43
    • Jobson, R.W.1    Qiu, Y.L.2
  • 35
    • 0022881350 scopus 로고
    • Silent nucleotide substitutions and G + C content of some mitochondrial and bacterial genes
    • Jukes, T. H., and Bhushan, V. (1986). Silent nucleotide substitutions and G + C content of some mitochondrial and bacterial genes. J. Mol. Evol. 24, 39-44.
    • (1986) J. Mol. Evol. , vol.24 , pp. 39-44
    • Jukes, T.H.1    Bhushan, V.2
  • 36
    • 0027452083 scopus 로고
    • Evolutionary changes in the genetic code
    • Jukes, T. H., and Osawa, S. (1993). Evolutionary changes in the genetic code. Comp. Biochem. Physiol. B 106, 489-494.
    • (1993) Comp. Biochem. Physiol. B , vol.106 , pp. 489-494
    • Jukes, T.H.1    Osawa, S.2
  • 37
    • 77349112000 scopus 로고    scopus 로고
    • The endosymbi-otic origin, diversification and fate of plastids
    • Keeling, P. J. (2010). The endosymbi-otic origin, diversification and fate of plastids. Philos. Trans. R. Soc. Lond. B Biol. Sci. 365, 729-748.
    • (2010) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.365 , pp. 729-748
    • Keeling, P.J.1
  • 39
    • 33646835562 scopus 로고    scopus 로고
    • Elimination of deleterious mutations in plastid genomes by gene conversion
    • Khakhlova, O., and Bock, R. (2006). Elimination of deleterious mutations in plastid genomes by gene conversion. Plant J. 46, 85-94.
    • (2006) Plant J , vol.46 , pp. 85-94
    • Khakhlova, O.1    Bock, R.2
  • 40
    • 79960916191 scopus 로고    scopus 로고
    • Evolutionarily conserved cox1 trans-splicing without cis-motifs
    • Kiethega, G. N., Turcotte, M., and Burger, G. (2011). Evolutionarily conserved cox1 trans-splicing without cis-motifs. Mol. Biol. Evol. 28, 2425-2428.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2425-2428
    • Kiethega, G.N.1    Turcotte, M.2    Burger, G.3
  • 42
    • 66449102561 scopus 로고    scopus 로고
    • DNA transfer from organelles to the nucleus: the idiosyncratic genetics of endosymbio-sis
    • Kleine, T., Maier, U. G., and Leister, D. (2009). DNA transfer from organelles to the nucleus: the idiosyncratic genetics of endosymbio-sis. Annu. Rev. Plant Biol. 60, 115-138.
    • (2009) Annu. Rev. Plant Biol. , vol.60 , pp. 115-138
    • Kleine, T.1    Maier, U.G.2    Leister, D.3
  • 43
    • 19844377877 scopus 로고    scopus 로고
    • Compositional properties of green-plant plastid genomes
    • Kusumi, J., and Tachida, H. (2005). Compositional properties of green-plant plastid genomes. J. Mol. Evol. 60,417-425.
    • (2005) J. Mol. Evol. , vol.60 , pp. 417-425
    • Kusumi, J.1    Tachida, H.2
  • 44
    • 0033367329 scopus 로고    scopus 로고
    • Mitochondrial genome evolution and the origin of eukaryotes
    • Lang, B. F., Gray, M. W., and Burger, G. (1999). Mitochondrial genome evolution and the origin of eukaryotes. Annu. Rev. Genet. 33, 351-397.
    • (1999) Annu. Rev. Genet. , vol.33 , pp. 351-397
    • Lang, B.F.1    Gray, M.W.2    Burger, G.3
  • 45
    • 77953484497 scopus 로고    scopus 로고
    • DNA repair in mitochondria: much more than we thought
    • Liu, P., and Demple, B. (2010). DNA repair in mitochondria: much more than we thought? Environ. Mol. Mutagen. 51,417-426.
    • (2010) Environ Mol. Mutagen. , vol.51 , pp. 417-426
    • Liu, P.1    Demple, B.2
  • 46
    • 34250709215 scopus 로고    scopus 로고
    • The Origins of Genome Architecture
    • Massachusetts: Sinauer Associates, Inc
    • Lynch, M. (2007). The Origins of Genome Architecture. Massachusetts: Sinauer Associates, Inc.
    • (2007)
    • Lynch, M.1
  • 47
    • 33645214213 scopus 로고    scopus 로고
    • Mutation pressure and the evolution of organelle genomic architecture
    • Lynch, M., Koskella, B., and Schaack, S. (2006). Mutation pressure and the evolution of organelle genomic architecture. Science 311, 1727-1730.
    • (2006) Science , vol.311 , pp. 1727-1730
    • Lynch, M.1    Koskella, B.2    Schaack, S.3
  • 48
    • 0031789680 scopus 로고    scopus 로고
    • Trans-splicing group II introns in plant mitochondria: the complete set of cis-arranged homologs in ferns, fern allies, and a hornwort
    • Malek, O., and Knoop, V. (1998). Trans-splicing group II introns in plant mitochondria: the complete set of cis-arranged homologs in ferns, fern allies, and a hornwort. RNA 4, 1599-1609.
    • (1998) RNA , vol.4 , pp. 1599-1609
    • Malek, O.1    Knoop, V.2
  • 49
    • 47949108144 scopus 로고    scopus 로고
    • High-resolution mapping of meiotic crossovers and non-crossovers in yeast
    • Mancera, E., Bourgon, R., Brozzi, A., Huber, W., and Steinmetz, L. M. (2008). High-resolution mapping of meiotic crossovers and non-crossovers in yeast. Nature 454, 479-485.
    • (2008) Nature , vol.454 , pp. 479-485
    • Mancera, E.1    Bourgon, R.2    Brozzi, A.3    Huber, W.4    Steinmetz, L.M.5
  • 50
    • 0028807395 scopus 로고
    • Metabolic rate and directional nucleotide substitution in animal mitochondrial DNA
    • Martin, A. P. (1995). Metabolic rate and directional nucleotide substitution in animal mitochondrial DNA. Mol. Biol. Evol. 12,1124-1131.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 1124-1131
    • Martin, A.P.1
  • 51
    • 0033103557 scopus 로고    scopus 로고
    • Phylogenetic affinities of Diplonema within the Euglenozoa as inferred from the SSU rRNA gene and partial COI protein sequences
    • Maslov, D. A., Yasuhira, S., and Simpson, L. (1999). Phylogenetic affinities of Diplonema within the Euglenozoa as inferred from the SSU rRNA gene and partial COI protein sequences. Protist 150, 33-42.
    • (1999) Protist , vol.150 , pp. 33-42
    • Maslov, D.A.1    Yasuhira, S.2    Simpson, L.3
  • 52
    • 77958507828 scopus 로고    scopus 로고
    • Functional convergence in reduced genomes of bacterial symbionts spanning 200 My of evolution
    • Mccutcheon, J. P., and Moran, N. A. (2010). Functional convergence in reduced genomes of bacterial symbionts spanning 200 My of evolution. Genome Biol. Evol. 2, 708-718.
    • (2010) Genome Biol. Evol. , vol.2 , pp. 708-718
    • Mccutcheon, J.P.1    Moran, N.A.2
  • 53
    • 43149105019 scopus 로고    scopus 로고
    • DNA barcodes provide a quick preview of mitochondrial genome composition
    • doi:10.1371/journal.pone.0000325
    • Min, X. J., and Hickey, D. A. (2007). DNA barcodes provide a quick preview of mitochondrial genome composition. PLoS ONE 2, e325. doi:10.1371/journal.pone.0000325
    • (2007) PLoS ONE , vol.2
    • Min, X.J.1    Hickey, D.A.2
  • 54
    • 0034497887 scopus 로고    scopus 로고
    • Use of mitogenomic information in teleostean molecular phylogenet-ics: a tree-based exploration under the maximum-parsimony optimal-ity criterion
    • Miya, M., and Nishida, M. (2000). Use of mitogenomic information in teleostean molecular phylogenet-ics: a tree-based exploration under the maximum-parsimony optimal-ity criterion. Mol. Phylogenet. Evol. 17,437-455.
    • (2000) Mol. Phylogenet. Evol. , vol.17 , pp. 437-455
    • Miya, M.1    Nishida, M.2
  • 56
    • 0031979388 scopus 로고    scopus 로고
    • Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages
    • Morton, B. R. (1998). Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages. J. Mol. Evol. 46, 449-459.
    • (1998) J. Mol. Evol. , vol.46 , pp. 449-459
    • Morton, B.R.1
  • 57
    • 50549201557 scopus 로고
    • The relation of recombination to mutational advance
    • Muller, H. J. (1964). The relation of recombination to mutational advance. Mutat. Res. 106,2-9.
    • (1964) Mutat. Res. , vol.106 , pp. 2-9
    • Muller, H.J.1
  • 58
    • 58249093939 scopus 로고    scopus 로고
    • How mitochondria produce reactive oxygen species
    • Murphy, M. P. (2009). How mitochondria produce reactive oxygen species. Biochem. J. 417, 1-13.
    • (2009) Biochem. J. , vol.417 , pp. 1-13
    • Murphy, M.P.1
  • 59
    • 80052142011 scopus 로고    scopus 로고
    • GC-biased gene conversion and selection affect GC content in the Oryza genus (rice)
    • Muyle, A., Serres-Giardi, L., Ressayre, A., Escobar, J., and Glémin, S. (2011). GC-biased gene conversion and selection affect GC content in the Oryza genus (rice). Mol. Biol. Evol. 28,2695-2706.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2695-2706
    • Muyle, A.1    Serres-Giardi, L.2    Ressayre, A.3    Escobar, J.4    Glémin, S.5
  • 60
    • 0031867074 scopus 로고    scopus 로고
    • Short repetitive sequences in green algal mitochondrial genomes: potential roles in mitochondrial genome evolution
    • Nedelcu, A. M., and Lee, R. W. (1998). Short repetitive sequences in green algal mitochondrial genomes: potential roles in mitochondrial genome evolution. Mol. Biol. Evol. 15,690-701.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 690-701
    • Nedelcu, A.M.1    Lee, R.W.2
  • 61
    • 0344876053 scopus 로고    scopus 로고
    • Mitochondrial genome diversity: evolution of the molecular architecture and replication strategy
    • Nosek, J., and Tomáska, L. (2003). Mitochondrial genome diversity: evolution of the molecular architecture and replication strategy. Curr. Genet. 44, 73-84.
    • (2003) Curr. Genet. , vol.44 , pp. 73-84
    • Nosek, J.1    Tomáska, L.2
  • 62
    • 42049092254 scopus 로고    scopus 로고
    • Chro-matophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes
    • Nowack, E. C. M., Melkonian, M., and Glöckner, G. (2008). Chro-matophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes. Curr. Biol. 18, 410-418.
    • (2008) Curr. Biol. , vol.18 , pp. 410-418
    • Nowack, E.C.M.1    Melkonian, M.2    Glöckner, G.3
  • 63
    • 35349003200 scopus 로고    scopus 로고
    • Bacterial pathogenomics
    • Pallen, M. J., and Wren, B. W. (2007). Bacterial pathogenomics. Nature 449, 835-842.
    • (2007) Nature , vol.449 , pp. 835-842
    • Pallen, M.J.1    Wren, B.W.2
  • 64
    • 0022294484 scopus 로고
    • Comparative organization of chloroplast genomes
    • Palmer, J. D. (1985). Comparative organization of chloroplast genomes. Annu. Rev. Genet. 19,325-354.
    • (1985) Annu. Rev. Genet. , vol.19 , pp. 325-354
    • Palmer, J.D.1
  • 65
    • 0037327022 scopus 로고    scopus 로고
    • The symbiotic birth and spread of plastids: how many times and whodunit
    • Palmer, J. D. (2003). The symbiotic birth and spread of plastids: how many times and whodunit? J. Phycol. 39, 1-9.
    • (2003) J Phycol , vol.39 , pp. 1-9
    • Palmer, J.D.1
  • 66
    • 8444235408 scopus 로고    scopus 로고
    • A broad survey of recombination in animal mitochondria
    • Piganeau, G., Gardner, M., and Eyre-Walker, A. (2004). A broad survey of recombination in animal mitochondria. Mol. Biol. Evol. 21, 2319-2325.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 2319-2325
    • Piganeau, G.1    Gardner, M.2    Eyre-Walker, A.3
  • 67
    • 0035673444 scopus 로고    scopus 로고
    • The units of selection on mitochondrial DNA
    • Rand, D. M. (2001). The units of selection on mitochondrial DNA. Annu. Rev. Ecol Syst. 32,415-448.
    • (2001) Annu. Rev. Ecol Syst. , vol.32 , pp. 415-448
    • Rand, D.M.1
  • 68
    • 79951578088 scopus 로고    scopus 로고
    • Phylogenetic relationships in Interfilum and Klebsormid-ium (Klebsormidiophyceae Strep-tophyta)
    • Rindi, F., Mikhailyuk, T. I., Sluiman, H. J., Friedl, T., and López-Bautista, J. M. (2011). Phylogenetic relationships in Interfilum and Klebsormid-ium (Klebsormidiophyceae, Strep-tophyta). Mol Phylogenet. Evol. 58, 218-231.
    • (2011) Mol Phylogenet. Evol. , vol.58 , pp. 218-231
    • Rindi, F.1    Mikhailyuk, T.I.2    Sluiman, H.J.3    Friedl, T.4    López-Bautista, J.M.5
  • 69
    • 84888203365 scopus 로고    scopus 로고
    • Base composition bias might result from competition for metabolic resources
    • Rocha, E. P., and Danchin, A. (2002). Base composition bias might result from competition for metabolic resources. Trends Genet. 34, 377-378.
    • (2002) Trends Genet , vol.34 , pp. 377-378
    • Rocha, E.P.1    Danchin, A.2
  • 70
    • 0037380299 scopus 로고    scopus 로고
    • Mitochondrial genomics of ostario-physan fishes: perspectives on phy-logeny and biogeography
    • Saitoh, K., Miya, M., Inoue, J. G., Ishig-uro, N. B., and Nishida, M. (2003). Mitochondrial genomics of ostario-physan fishes: perspectives on phy-logeny and biogeography. J. Mol. Evol. 56, 464-472.
    • (2003) J. Mol. Evol. , vol.56 , pp. 464-472
    • Saitoh, K.1    Miya, M.2    Inoue, J.G.3    Ishig-uro, N.B.4    Nishida, M.5
  • 72
    • 0029040510 scopus 로고
    • Sense from nonsense: RNA editing in mitochondria of kinetoplastid protozoa and slime molds
    • Simpson, L., and Thiemann, O. H. (1995). Sense from nonsense: RNA editing in mitochondria of kinetoplastid protozoa and slime molds. Cell 81, 837-840.
    • (1995) Cell , vol.81 , pp. 837-840
    • Simpson, L.1    Thiemann, O.H.2
  • 73
    • 33846443616 scopus 로고    scopus 로고
    • Mitochondrial genome of Savalia savaglia (Cnidaria Hexacorallia) and early metazoan phylogeny
    • Sinniger, F., Chevaldonné, P., and Pawlowski, J. (2007). Mitochondrial genome of Savalia savaglia (Cnidaria, Hexacorallia) and early metazoan phylogeny. J. Mol. Evol. 64,196-203.
    • (2007) J. Mol. Evol. , vol.64 , pp. 196-203
    • Sinniger, F.1    Chevaldonné, P.2    Pawlowski, J.3
  • 74
    • 70849112619 scopus 로고    scopus 로고
    • Unparalleled GC content in the plastid DNA of Selaginella
    • Smith, D. R. (2009). Unparalleled GC content in the plastid DNA of Selaginella. Plant Mol. Biol. 71, 627-639.
    • (2009) Plant Mol. Biol. , vol.71 , pp. 627-639
    • Smith, D.R.1
  • 75
    • 80052067631 scopus 로고    scopus 로고
    • The GC-rich mitochondrial and plastid genomes of the green alga Coc-comyxa give insight into the evolution of organelle DNA nucleotide landscape
    • doi:10.1371/journal.pone.0023624
    • Smith, D. R., Burki, F.,Yamada, T., Grim-wood, J., Grigoriev, I. V., Van Etten, J. L., and Keeling, P. J. (2011). The GC-rich mitochondrial and plastid genomes of the green alga Coc-comyxa give insight into the evolution of organelle DNA nucleotide landscape. PLoS ONE 6, e23624. doi:10.1371/journal.pone.0023624
    • (2011) PLoS ONE , vol.6
    • Smith, D.R.1    Burki, F.2    Yamada, T.3    Grim-wood, J.4    Grigoriev, I.V.5    Van Etten, J.L.6    Keeling, P.J.7
  • 76
    • 77957708154 scopus 로고    scopus 로고
    • Evolution of linear mitochondrial DNA in three known lineages of Poly tomella
    • Smith, D. R., Hua, J., and Lee, R. W. (2010). Evolution of linear mitochondrial DNA in three known lineages of Poly tomella. Curr. Genet. 56, 427-438.
    • (2010) Curr. Genet. , vol.56 , pp. 427-438
    • Smith, D.R.1    Hua, J.2    Lee, R.W.3
  • 77
    • 39749186643 scopus 로고    scopus 로고
    • Mitochondrial genome of the colorless green alga Polytomella capuana: a linear molecule with an unprecedented GC content
    • Smith, D. R., and Lee, R. W. (2008). Mitochondrial genome of the colorless green alga Polytomella capuana: a linear molecule with an unprecedented GC content. Mol. Biol. Evol. 25,487-496.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 487-496
    • Smith, D.R.1    Lee, R.W.2
  • 78
    • 33947218312 scopus 로고    scopus 로고
    • The chloroplast genome from a lycophyte (micro-phyllophyte), Selaginella uncinata, has a unique inversion, transpositions and many gene losses
    • Tsuji, S., Ueda, K., Nishiyama, T., Hasebe, M., Yoshikawa, S., Kona-gaya, A., Nishiuchi, T., and Yam-aguchi, K. (2007). The chloroplast genome from a lycophyte (micro-phyllophyte), Selaginella uncinata, has a unique inversion, transpositions and many gene losses. J. Plant Res. 120,281-290.
    • (2007) J. Plant Res. , vol.120 , pp. 281-290
    • Tsuji, S.1    Ueda, K.2    Nishiyama, T.3    Hasebe, M.4    Yoshikawa, S.5    Kona-gaya, A.6    Nishiuchi, T.7    Yam-aguchi, K.8
  • 79
    • 79951574071 scopus 로고    scopus 로고
    • Systematically fragmented genes in a multipartite mitochondrial genome
    • Vlcek, C., Marande, W., Teijeiro, S., Lukes, J., and Burger, G. (2011). Systematically fragmented genes in a multipartite mitochondrial genome. Nucleic Acids Res. 39, 979-988.
    • (2011) Nucleic Acids Res , vol.39 , pp. 979-988
    • Vlcek, C.1    Marande, W.2    Teijeiro, S.3    Lukes, J.4    Burger, G.5
  • 80
    • 0025797314 scopus 로고
    • Mammalian DNA replication: mutation biases and the mutation rate
    • Wolfe, K. H. (1991). Mammalian DNA replication: mutation biases and the mutation rate. J. Theor. Biol. 149, 441-451.
    • (1991) J. Theor. Biol. , vol.149 , pp. 441-451
    • Wolfe, K.H.1
  • 81
    • 77956169639 scopus 로고    scopus 로고
    • Genome characterization of a debilitation-associated mitovirus infecting the phytopathogenic fungus Botrytis cinerea
    • Wu, M., Zhang, L., Li, G., Jiang, D., and Ghabrial, S. A. (2010). Genome characterization of a debilitation-associated mitovirus infecting the phytopathogenic fungus Botrytis cinerea. Virology 406, 117-126.
    • (2010) Virology , vol.406 , pp. 117-126
    • Wu, M.1    Zhang, L.2    Li, G.3    Jiang, D.4    Ghabrial, S.A.5
  • 82
    • 77952355762 scopus 로고    scopus 로고
    • Genome-wide evolutionary analysis of eukaryotic DNA methylation
    • Zemach, A., Mcdaniel, I.E., Silva, P., and Zilberman,D. (2010). Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328, 916-919.
    • (2010) Science , vol.328 , pp. 916-919
    • Zemach, A.1    Mcdaniel, I.E.2    Silva, P.3    Zilberman, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.