-
1
-
-
79960078998
-
Plant mitochondrial genomes and recombination
-
In: Kempken F, editor.. New York: Springer
-
Arrieta-Montiel MP, Mackenzie SA. 2011. Plant mitochondrial genomes and recombination. In: Kempken F, editor. Plant mitochondria. New York: Springer. p. 65-82.
-
(2011)
Plant Mitochondria
, pp. 65-82
-
-
Arrieta-Montiel, M.P.1
Mackenzie, S.A.2
-
2
-
-
58849161775
-
Hotspots of biased nucleotide substitutions in human genes
-
Berglund J, Pollard KS,Webster MT. 2009. Hotspots of biased nucleotide substitutions in human genes. PLoS Biol. 7:e26.
-
(2009)
PLoS Biol
, vol.7
-
-
Berglund, J.1
Pollard, K.S.2
Webster, M.T.3
-
3
-
-
0028386924
-
Rps3 and rpl16 genes do not overlap in Oenothera mitochondria: GTG as a potential translation initiation codon in plant mitochondria?
-
Bock H, Brennicke A, Schuster W. 1994. Rps3 and rpl16 genes do not overlap in Oenothera mitochondria: GTG as a potential translation initiation codon in plant mitochondria? Plant Mol Biol. 24: 811-818.
-
(1994)
Plant Mol Biol
, vol.24
, pp. 811-818
-
-
Bock, H.1
Brennicke, A.2
Schuster, W.3
-
4
-
-
3242670510
-
Molecular phylogenetic dating of asterid flowering plants shows early Cretaceous diversification
-
Bremer K, Friis EM, Bremer B. 2004. Molecular phylogenetic dating of asterid flowering plants shows early Cretaceous diversification. Syst Biol. 53:496-505.
-
(2004)
Syst Biol
, vol.53
, pp. 496-505
-
-
Bremer, K.1
Friis, E.M.2
Bremer, B.3
-
5
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17: 540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
6
-
-
31144465926
-
Hearing silence: Non-neutral evolution at synonymous sites in mammals
-
Chamary JV, Parmley JL, Hurst LD. 2006. Hearing silence: non-neutral evolution at synonymous sites in mammals. Nat Rev Genet. 7: 98-108.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 98-108
-
-
Chamary, J.V.1
Parmley, J.L.2
Hurst, L.D.3
-
7
-
-
11144236816
-
Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants
-
Cho Y, Mower JP, Qiu YL, Palmer JD. 2004. Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants. Proc Natl Acad Sci U S A. 101:17741-17746.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 17741-17746
-
-
Cho, Y.1
Mower, J.P.2
Qiu, Y.L.3
Palmer, J.D.4
-
8
-
-
19344378811
-
Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome
-
Chuang JH, Li H. 2004. Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome. PLoS Biol. 2:e29.
-
(2004)
PLoS Biol
, vol.2
-
-
Chuang, J.H.1
Li, H.2
-
9
-
-
56549086194
-
Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants
-
Drouin G, Daoud H, Xia J. 2008. Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants. Mol Phylogenet Evol. 49:827-831.
-
(2008)
Mol Phylogenet Evol
, vol.49
, pp. 827-831
-
-
Drouin, G.1
Daoud, H.2
Xia, J.3
-
10
-
-
0031252815
-
Male-driven evolution of DNA sequences in birds
-
Ellegren H, Fridolfsson AK. 1997. Male-driven evolution of DNA sequences in birds. Nat Genet. 17:182-184.
-
(1997)
Nat Genet
, vol.17
, pp. 182-184
-
-
Ellegren, H.1
Fridolfsson, A.K.2
-
11
-
-
0030888864
-
Correlated rates of synonymous site evolution across plant genomes
-
Eyre-Walker A, Gaut BS. 1997. Correlated rates of synonymous site evolution across plant genomes. Mol Biol Evol. 14:455-460.
-
(1997)
Mol Biol Evol
, vol.14
, pp. 455-460
-
-
Eyre-Walker, A.1
Gaut, B.S.2
-
12
-
-
25444530606
-
Hypervariable noncoding sequences in Saccharomyces cerevisiae
-
Fay JC, Benavides JA. 2005. Hypervariable noncoding sequences in Saccharomyces cerevisiae. Genetics 170:1575-1587.
-
(2005)
Genetics
, vol.170
, pp. 1575-1587
-
-
Fay, J.C.1
Benavides, J.A.2
-
13
-
-
46749127393
-
Measuring the prevalence of regional mutation rates: An analysis of silent substitutions in mammals, fungi, and insects
-
Fox AK, Tuch BB, Chuang JH. 2008. Measuring the prevalence of regional mutation rates: an analysis of silent substitutions in mammals, fungi, and insects. BMC Evol Biol. 8:186.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 186
-
-
Fox, A.K.1
Tuch, B.B.2
Chuang, J.H.3
-
14
-
-
23744486255
-
The scale of mutational variation in the murid genome
-
Gaffney DJ, Keightley PD. 2005. The scale of mutational variation in the murid genome. Genome Res. 15:1086-1094.
-
(2005)
Genome Res
, vol.15
, pp. 1086-1094
-
-
Gaffney, D.J.1
Keightley, P.D.2
-
15
-
-
84872124943
-
Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and resolve the position of Equisetales among monilophytes
-
Grewe F, Guo WH, Gubbels EA, Hansen AK, Mower JP. 2013. Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and resolve the position of Equisetales among monilophytes. BMC Evol Biol. 13:8.
-
(2013)
BMC Evol Biol
, vol.13
, pp. 8
-
-
Grewe, F.1
Guo, W.H.2
Gubbels, E.A.3
Hansen, A.K.4
Mower, J.P.5
-
16
-
-
0038015586
-
A neutral explanation for the correlation of diversity with recombination rates in humans
-
Hellmann I, Ebersberger I, Ptak SE, Paabo S, Przeworski M. 2003. A neutral explanation for the correlation of diversity with recombination rates in humans. Am J Hum Genet. 72:1527-1535.
-
(2003)
Am J Hum Genet
, vol.72
, pp. 1527-1535
-
-
Hellmann, I.1
Ebersberger, I.2
Ptak, S.E.3
Paabo, S.4
Przeworski, M.5
-
17
-
-
84866954298
-
Loss of two introns from the Magnolia tripetala mitochondrial cox2 gene implicates horizontal gene transfer and gene conversion as a novel mechanism of intron loss
-
Hepburn NJ, Schmidt DW, Mower JP. 2012. Loss of two introns from the Magnolia tripetala mitochondrial cox2 gene implicates horizontal gene transfer and gene conversion as a novel mechanism of intron loss. Mol Biol Evol. 29:3111-3120.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 3111-3120
-
-
Hepburn, N.J.1
Schmidt, D.W.2
Mower, J.P.3
-
18
-
-
84862800191
-
Evolutionary rates of commonly used nuclear and organelle markers of Arabidopsis relatives (Brassicaceae)
-
Huang CC, Hung KH,WangWK, Ho CW, Huang CL, Hsu TW, Osada N, Hwang CC, Chiang TY. 2012. Evolutionary rates of commonly used nuclear and organelle markers of Arabidopsis relatives (Brassicaceae). Gene 499:194-201.
-
(2012)
Gene
, vol.499
, pp. 194-201
-
-
Huang, C.C.1
Hung, K.H.2
Wang, W.K.3
Ho, C.W.4
Huang, C.L.5
Hsu, T.W.6
Osada, N.7
Hwang, C.C.8
Chiang, T.Y.9
-
19
-
-
84875168223
-
The genome and transcriptome of perennial ryegrass mitochondria
-
Islam MS, Studer B, Byrne SL, Farrell JD, Panitz F, Bendixen C, Moller IM, Asp T. 2013. The genome and transcriptome of perennial ryegrass mitochondria. BMC Genomics 14:202.
-
(2013)
BMC Genomics
, vol.14
, pp. 202
-
-
Islam, M.S.1
Studer, B.2
Byrne, S.L.3
Farrell, J.D.4
Panitz, F.5
Bendixen, C.6
Moller, I.M.7
Asp, T.8
-
20
-
-
84870780922
-
Plastid genomes of seed plants
-
In: Bock R, Knoop V, editors.. Dordrecht (The Netherlands): Springer
-
Jansen RK, Ruhlman TA. 2012. Plastid genomes of seed plants. In: Bock R, Knoop V, editors. Genomics of chloroplasts and mitochondria. Dordrecht (The Netherlands): Springer. p. 103-126.
-
(2012)
Genomics of Chloroplasts and Mitochondria
, pp. 103-126
-
-
Jansen, R.K.1
Ruhlman, T.A.2
-
21
-
-
84871266434
-
Capturing the biofuel wellhead and powerhouse: The chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata
-
Kazakoff SH, Imelfort M, Edwards D, Koehorst J, Biswas B, Batley J, Scott PT, Gresshoff PM. 2012. Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata. PLoS One 7: e51687.
-
(2012)
PLoS One
, vol.7
-
-
Kazakoff, S.H.1
Imelfort, M.2
Edwards, D.3
Koehorst, J.4
Biswas, B.5
Batley, J.6
Scott, P.T.7
Gresshoff, P.M.8
-
23
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods. 9:357-359.
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
24
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
-
25
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
26
-
-
78650071302
-
Localized hypermutation and associated gene losses in legume chloroplast genomes
-
Magee AM, Aspinall S, Rice DW, Cusack BP, Semon M, Perry AS, Stefanovic S, Milbourne D, Barth S, Palmer JD, et al. 2010. Localized hypermutation and associated gene losses in legume chloroplast genomes. Genome Res. 20:1700-1710.
-
(2010)
Genome Res
, vol.20
, pp. 1700-1710
-
-
Magee, A.M.1
Aspinall, S.2
Rice, D.W.3
Cusack, B.P.4
Semon, M.5
Perry, A.S.6
Stefanovic, S.7
Milbourne, D.8
Barth, S.9
Palmer, J.D.10
-
27
-
-
0037061501
-
Strong male-driven evolution of DNA sequences in humans and apes
-
Makova KD, Li WH. 2002. Strong male-driven evolution of DNA sequences in humans and apes. Nature 416:624-626.
-
(2002)
Nature
, vol.416
, pp. 624-626
-
-
Makova, K.D.1
Li, W.H.2
-
28
-
-
0347601042
-
Genic mutation rates in mammals: Local similarity, chromosomal heterogeneity, and X-versusautosome disparity
-
Malcom CM,Wyckoff GJ, Lahn BT. 2003. Genic mutation rates in mammals: local similarity, chromosomal heterogeneity, and X-versusautosome disparity. Mol Biol Evol. 20:1633-1641.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1633-1641
-
-
Malcom, C.M.1
Wyckoff, G.J.2
Lahn, B.T.3
-
29
-
-
84860512528
-
Evidence of nonrandom mutation rates suggests an evolutionary risk management strategy
-
Martincorena I, Seshasayee AS, Luscombe NM. 2012. Evidence of nonrandom mutation rates suggests an evolutionary risk management strategy. Nature 485:95-98.
-
(2012)
Nature
, vol.485
, pp. 95-98
-
-
Martincorena, I.1
Seshasayee, A.S.2
Luscombe, N.M.3
-
30
-
-
67849095411
-
The PREP suite: Predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments
-
Mower JP. 2009. The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments. Nucleic Acids Res. 37:W253-W259.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Mower, J.P.1
-
31
-
-
73449119982
-
Ribosomal protein L10 is encoded in the mitochondrial genome of many land plants and green algae
-
Mower JP, Bonen L. 2009. Ribosomal protein L10 is encoded in the mitochondrial genome of many land plants and green algae. BMC Evol Biol. 9:265.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 265
-
-
Mower, J.P.1
Bonen, L.2
-
32
-
-
84864612086
-
The role of horizontal transfer in shaping the plant mitochondrial genome
-
In: Laurence M-D, editor.. New York: Academic Press
-
Mower JP, Jain K, Hepburn NJ. 2012. The role of horizontal transfer in shaping the plant mitochondrial genome. In: Laurence M-D, editor. Advances in botanical research. New York: Academic Press. p. 41-69.
-
(2012)
Advances in Botanical Research
, pp. 41-69
-
-
Mower, J.P.1
Jain, K.2
Hepburn, N.J.3
-
33
-
-
84930711659
-
Plant mitochondrial genome diversity: The genomics revolution
-
In: Wendel JF, editor.. Vol. 1. Vienna: Springer
-
Mower JP, Sloan DB, Alverson AJ. 2012. Plant mitochondrial genome diversity: the genomics revolution. In: Wendel JF, editor. Plant genome diversity. Vol. 1. Vienna: Springer. p. 123-144.
-
(2012)
Plant Genome Diversity
, pp. 123-144
-
-
Mower, J.P.1
Sloan, D.B.2
Alverson, A.J.3
-
34
-
-
78650378822
-
Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes
-
Mower JP, Stefanovic S, Hao W, Gummow JS, Jain K, Ahmed D, Palmer JD. 2010. Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes. BMC Biol. 8:150.
-
(2010)
BMC Biol
, vol.8
, pp. 150
-
-
Mower, J.P.1
Stefanovic, S.2
Hao, W.3
Gummow, J.S.4
Jain, K.5
Ahmed, D.6
Palmer, J.D.7
-
35
-
-
34548568981
-
Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants
-
Mower JP, Touzet P, Gummow JS, Delph LF, Palmer JD. 2007. Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants. BMC Evol Biol. 7:135.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 135
-
-
Mower, J.P.1
Touzet, P.2
Gummow, J.S.3
Delph, L.F.4
Palmer, J.D.5
-
36
-
-
31544435757
-
Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae
-
Parkinson CL, Mower JP, Qiu YL, Shirk AJ, Song KM, Young ND, dePamphilis CW, Palmer JD. 2005. Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae. BMC Evol Biol. 5:73.
-
(2005)
BMC Evol Biol
, vol.5
, pp. 73
-
-
Parkinson, C.L.1
Mower, J.P.2
Qiu, Y.L.3
Shirk, A.J.4
Song, K.M.5
Young, N.D.6
Depamphilis, C.W.7
Palmer, J.D.8
-
37
-
-
0036840720
-
Nucleotide substitution rates in legume chloroplast DNA depend on the presence of the inverted repeat
-
Perry AS, Wolfe KH. 2002. Nucleotide substitution rates in legume chloroplast DNA depend on the presence of the inverted repeat. J Mol Evol. 55:501-508.
-
(2002)
J Mol Evol
, vol.55
, pp. 501-508
-
-
Perry, A.S.1
Wolfe, K.H.2
-
38
-
-
0033026606
-
Nucleotide substitution rate of mammalian mitochondrial genomes
-
Pesole G, Gissi C, De Chirico A, Saccone C. 1999. Nucleotide substitution rate of mammalian mitochondrial genomes. J Mol Evol. 48:427-434.
-
(1999)
J Mol Evol
, vol.48
, pp. 427-434
-
-
Pesole, G.1
Gissi, C.2
De Chirico, A.3
Saccone, C.4
-
40
-
-
33645242016
-
Evolutionary rates and expression level in Chlamydomonas
-
Popescu CE, Borza T, Bielawski JP, Lee RW. 2006. Evolutionary rates and expression level in Chlamydomonas. Genetics 172:1567-1576.
-
(2006)
Genetics
, vol.172
, pp. 1567-1576
-
-
Popescu, C.E.1
Borza, T.2
Bielawski, J.P.3
Lee, R.W.4
-
41
-
-
84876144707
-
The "fossilized" mitochondrial genome of Liriodendron tulipifera: Ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate
-
Richardson AO, Rice DW, Young GJ, Alverson AJ, Palmer JD. 2013. The "fossilized" mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate. BMC Biol. 11:29.
-
(2013)
BMC Biol
, vol.11
, pp. 29
-
-
Richardson, A.O.1
Rice, D.W.2
Young, G.J.3
Alverson, A.J.4
Palmer, J.D.5
-
42
-
-
84876348105
-
Sounds of silence: Synonymous nucleotides as a key to biological regulation and complexity
-
Shabalina SA, Spiridonov NA, Kashina A. 2013. Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity. Nucleic Acids Res. 41:2073-2094.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 2073-2094
-
-
Shabalina, S.A.1
Spiridonov, N.A.2
Kashina, A.3
-
43
-
-
0030513613
-
GTG as translation initiation codon in the apocytochrome b gene of sunflower mitochondria
-
Siculella L, Pacoda D, Treglia S, Gallerani R, Ceci LR. 1996. GTG as translation initiation codon in the apocytochrome b gene of sunflower mitochondria. DNA Seq. 6:365-369.
-
(1996)
DNA Seq
, vol.6
, pp. 365-369
-
-
Siculella, L.1
Pacoda, D.2
Treglia, S.3
Gallerani, R.4
Ceci, L.R.5
-
44
-
-
67649376350
-
Strong evidence for lineage and sequence specificity of substitution rates and patterns in Drosophila
-
Singh ND, Arndt PF, Clark AG, Aquadro CF. 2009. Strong evidence for lineage and sequence specificity of substitution rates and patterns in Drosophila. Mol Biol Evol. 26:1591-1605.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1591-1605
-
-
Singh, N.D.1
Arndt, P.F.2
Clark, A.G.3
Aquadro, C.F.4
-
45
-
-
84856483430
-
Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates
-
Sloan DB, Alverson AJ, Chuckalovcak JP, Wu M, McCauley DE, Palmer JD, Taylor DR. 2012. Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates. PLoS Biol. 10:e1001241.
-
(2012)
PLoS Biol
, vol.10
-
-
Sloan, D.B.1
Alverson, A.J.2
Chuckalovcak, J.P.3
Wu, M.4
McCauley, D.E.5
Palmer, J.D.6
Taylor, D.R.7
-
46
-
-
84863111501
-
Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene
-
Sloan DB, Alverson AJ, Wu M, Palmer JD, Taylor DR. 2012. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene. Genome Biol Evol. 4:294-306.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 294-306
-
-
Sloan, D.B.1
Alverson, A.J.2
Wu, M.3
Palmer, J.D.4
Taylor, D.R.5
-
47
-
-
77956943288
-
Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: Selection vs
-
Sloan DB, MacQueen AH, Alverson AJ, Palmer JD, Taylor DR. 2010. Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: selection vs. retroprocessing as the driving force. Genetics 185:1369-1380.
-
(2010)
Retroprocessing As the Driving Force. Genetics
, vol.185
, pp. 1369-1380
-
-
Sloan, D.B.1
Macqueen, A.H.2
Alverson, A.J.3
Palmer, J.D.4
Taylor, D.R.5
-
48
-
-
72449190576
-
Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae
-
Sloan DB, Oxelman B, Rautenberg A, Taylor DR. 2009. Phylogenetic analysis of mitochondrial substitution rate variation in the angiosperm tribe Sileneae. BMC Evol Biol. 9:260.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 260
-
-
Sloan, D.B.1
Oxelman, B.2
Rautenberg, A.3
Taylor, D.R.4
-
49
-
-
77954423296
-
Testing for selection on synonymous sites in plant mitochondrial DNA: The role of codon bias and RNA editing
-
Sloan DB, Taylor DR. 2010. Testing for selection on synonymous sites in plant mitochondrial DNA: the role of codon bias and RNA editing. J Mol Evol. 70:479-491.
-
(2010)
J Mol Evol
, vol.70
, pp. 479-491
-
-
Sloan, D.B.1
Taylor, D.R.2
-
50
-
-
0036737595
-
Deterministic mutation rate variation in the human genome
-
Smith NG, Webster MT, Ellegren H. 2002. Deterministic mutation rate variation in the human genome. Genome Res. 12:1350-1356.
-
(2002)
Genome Res
, vol.12
, pp. 1350-1356
-
-
Smith, N.G.1
Webster, M.T.2
Ellegren, H.3
-
51
-
-
4243088097
-
The genome sequence of Caenorhabditis briggsae: A platform for comparative genomics
-
Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, et al. 2003. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol. 1:e45.
-
(2003)
PLoS Biol
, vol.1
-
-
Stein, L.D.1
Bao, Z.2
Blasiar, D.3
Blumenthal, T.4
Brent, M.R.5
Chen, N.6
Chinwalla, A.7
Clarke, L.8
Clee, C.9
Coghlan, A.10
-
52
-
-
0028009141
-
RNA editing of a conserved reading frame in plant mitochondria increases its similarity to two overlapping reading frames in Escherichia coli
-
Sunkel S, Brennicke A, Knoop V. 1994. RNA editing of a conserved reading frame in plant mitochondria increases its similarity to two overlapping reading frames in Escherichia coli. Mol Gen Genet. 242: 65-72.
-
(1994)
Mol Gen Genet
, vol.242
, pp. 65-72
-
-
Sunkel, S.1
Brennicke, A.2
Knoop, V.3
-
53
-
-
33747847779
-
PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
-
Suyama M, Torrents D, Bork P. 2006. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 34:W609-W612.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Suyama, M.1
Torrents, D.2
Bork, P.3
-
54
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, et al. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwala, R.7
Ainscough, R.8
Alexandersson, M.9
An, P.10
-
55
-
-
0023462635
-
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
-
Wolfe KH, Li WH, Sharp PM. 1987. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci U S A. 84:9054-9058.
-
(1987)
Proc Natl Acad Sci U S A
, vol.84
, pp. 9054-9058
-
-
Wolfe, K.H.1
Li, W.H.2
Sharp, P.M.3
-
56
-
-
79961064486
-
Factors that contribute to variation in evolutionary rate among Arabidopsis genes
-
Yang L, Gaut BS. 2011. Factors that contribute to variation in evolutionary rate among Arabidopsis genes. Mol Biol Evol. 28: 2359-2369.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2359-2369
-
-
Yang, L.1
Gaut, B.S.2
-
57
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
|