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Volumn 59, Issue 4, 2015, Pages 698-711

Discovery, Annotation, and Functional Analysis of Long Noncoding RNAs Controlling Cell-Cycle Gene Expression and Proliferation in Breast Cancer Cells

Author keywords

[No Author keywords available]

Indexed keywords

ESTROGEN; HISTONE; LONG UNTRANSLATED RNA; TRANSCRIPTOME; CELL CYCLE PROTEIN;

EID: 84939570237     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2015.06.023     Document Type: Article
Times cited : (161)

References (45)
  • 2
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili M.N., Trapnell C., Goff L., Koziol M., Tazon-Vega B., Regev A., Rinn J.L. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 2011, 25:1915-1927.
    • (2011) Genes Dev. , vol.25 , pp. 1915-1927
    • Cabili, M.N.1    Trapnell, C.2    Goff, L.3    Koziol, M.4    Tazon-Vega, B.5    Regev, A.6    Rinn, J.L.7
  • 3
    • 24644519490 scopus 로고    scopus 로고
    • The transcriptional landscape of the mammalian genome
    • FANTOM Consortium, RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    • Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., et al. The transcriptional landscape of the mammalian genome. Science 2005, 309:1559-1563. FANTOM Consortium, RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group).
    • (2005) Science , vol.309 , pp. 1559-1563
    • Carninci, P.1    Kasukawa, T.2    Katayama, S.3    Gough, J.4    Frith, M.C.5    Maeda, N.6    Oyama, R.7    Ravasi, T.8    Lenhard, B.9    Wells, C.10
  • 8
    • 84886252113 scopus 로고    scopus 로고
    • RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts
    • Geisler S., Coller J. RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts. Nat. Rev. Mol. Cell Biol. 2013, 14:699-712.
    • (2013) Nat. Rev. Mol. Cell Biol. , vol.14 , pp. 699-712
    • Geisler, S.1    Coller, J.2
  • 14
    • 79955836460 scopus 로고    scopus 로고
    • A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
    • Hah N., Danko C.G., Core L., Waterfall J.J., Siepel A., Lis J.T., Kraus W.L. A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell 2011, 145:622-634.
    • (2011) Cell , vol.145 , pp. 622-634
    • Hah, N.1    Danko, C.G.2    Core, L.3    Waterfall, J.J.4    Siepel, A.5    Lis, J.T.6    Kraus, W.L.7
  • 15
    • 84881171344 scopus 로고    scopus 로고
    • Enhancer transcripts mark active estrogen receptor binding sites
    • Hah N., Murakami S., Nagari A., Danko C.G., Kraus W.L. Enhancer transcripts mark active estrogen receptor binding sites. Genome Res. 2013, 23:1210-1223.
    • (2013) Genome Res. , vol.23 , pp. 1210-1223
    • Hah, N.1    Murakami, S.2    Nagari, A.3    Danko, C.G.4    Kraus, W.L.5
  • 16
    • 78651397147 scopus 로고    scopus 로고
    • Large non-coding RNAs: missing links in cancer?
    • Huarte M., Rinn J.L. Large non-coding RNAs: missing links in cancer?. Hum. Mol. Genet. 2010, 19(R2):R152-R161.
    • (2010) Hum. Mol. Genet. , vol.19 , Issue.R2 , pp. R152-R161
    • Huarte, M.1    Rinn, J.L.2
  • 19
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim D., Pertea G., Trapnell C., Pimentel H., Kelley R., Salzberg S.L. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 2013, 14:R36.
    • (2013) Genome Biol. , vol.14
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5    Salzberg, S.L.6
  • 20
    • 79959446962 scopus 로고    scopus 로고
    • PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
    • Lin M.F., Jungreis I., Kellis M. PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions. Bioinformatics 2011, 27:i275-i282.
    • (2011) Bioinformatics , vol.27 , pp. i275-i282
    • Lin, M.F.1    Jungreis, I.2    Kellis, M.3
  • 21
    • 84888232130 scopus 로고    scopus 로고
    • Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs
    • Marques A.C., Hughes J., Graham B., Kowalczyk M.S., Higgs D.R., Ponting C.P. Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs. Genome Biol. 2013, 14:R131.
    • (2013) Genome Biol. , vol.14
    • Marques, A.C.1    Hughes, J.2    Graham, B.3    Kowalczyk, M.S.4    Higgs, D.R.5    Ponting, C.P.6
  • 27
    • 84861904178 scopus 로고    scopus 로고
    • Genome regulation by long noncoding RNAs
    • Rinn J.L., Chang H.Y. Genome regulation by long noncoding RNAs. Annu. Rev. Biochem. 2012, 81:145-166.
    • (2012) Annu. Rev. Biochem. , vol.81 , pp. 145-166
    • Rinn, J.L.1    Chang, H.Y.2
  • 28
    • 80051941094 scopus 로고    scopus 로고
    • Identification of novel transcripts in annotated genomes using RNA-Seq
    • Roberts A., Pimentel H., Trapnell C., Pachter L. Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics 2011, 27:2325-2329.
    • (2011) Bioinformatics , vol.27 , pp. 2325-2329
    • Roberts, A.1    Pimentel, H.2    Trapnell, C.3    Pachter, L.4
  • 29
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson M.D., McCarthy D.J., Smyth G.K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010, 26:139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 30
    • 84939564622 scopus 로고    scopus 로고
    • The lncRNA DRAIC/PCAT29 locus constitutes a tumor-suppressive nexus
    • Sakurai K., Reon B.J., Anaya J., Dutta A. The lncRNA DRAIC/PCAT29 locus constitutes a tumor-suppressive nexus. Mol. Cancer Res. 2015, 13:828-838.
    • (2015) Mol. Cancer Res. , vol.13 , pp. 828-838
    • Sakurai, K.1    Reon, B.J.2    Anaya, J.3    Dutta, A.4
  • 32
    • 84883249942 scopus 로고    scopus 로고
    • Minireview: Long noncoding RNAs: new "links" between gene expression and cellular outcomes in endocrinology
    • Sun M., Kraus W.L. Minireview: Long noncoding RNAs: new "links" between gene expression and cellular outcomes in endocrinology. Mol. Endocrinol. 2013, 27:1390-1402.
    • (2013) Mol. Endocrinol. , vol.27 , pp. 1390-1402
    • Sun, M.1    Kraus, W.L.2
  • 33
    • 84961291622 scopus 로고    scopus 로고
    • From discovery to function: the expanding roles of long non-coding RNAs in physiology and disease
    • Sun M., Kraus W.L. From discovery to function: the expanding roles of long non-coding RNAs in physiology and disease. Endocr. Rev. 2015, 36:25-64.
    • (2015) Endocr. Rev. , vol.36 , pp. 25-64
    • Sun, M.1    Kraus, W.L.2
  • 34
    • 84860332427 scopus 로고    scopus 로고
    • Estrogen regulates JNK1 genomic localization to control gene expression and cell growth in breast cancer cells
    • Sun M., Isaacs G.D., Hah N., Heldring N., Fogarty E.A., Kraus W.L. Estrogen regulates JNK1 genomic localization to control gene expression and cell growth in breast cancer cells. Mol. Endocrinol. 2012, 26:736-747.
    • (2012) Mol. Endocrinol. , vol.26 , pp. 736-747
    • Sun, M.1    Isaacs, G.D.2    Hah, N.3    Heldring, N.4    Fogarty, E.A.5    Kraus, W.L.6
  • 39
    • 84879987789 scopus 로고    scopus 로고
    • LincRNAs: genomics, evolution, and mechanisms
    • Ulitsky I., Bartel D.P. lincRNAs: genomics, evolution, and mechanisms. Cell 2013, 154:26-46.
    • (2013) Cell , vol.154 , pp. 26-46
    • Ulitsky, I.1    Bartel, D.P.2
  • 41
    • 84904735424 scopus 로고    scopus 로고
    • Transcriptional regulatory functions of nuclear long noncoding RNAs
    • Vance K.W., Ponting C.P. Transcriptional regulatory functions of nuclear long noncoding RNAs. Trends Genet. 2014, 30:348-355.
    • (2014) Trends Genet. , vol.30 , pp. 348-355
    • Vance, K.W.1    Ponting, C.P.2
  • 43
    • 80053045739 scopus 로고    scopus 로고
    • Molecular mechanisms of long noncoding RNAs
    • Wang K.C., Chang H.Y. Molecular mechanisms of long noncoding RNAs. Mol. Cell 2011, 43:904-914.
    • (2011) Mol. Cell , vol.43 , pp. 904-914
    • Wang, K.C.1    Chang, H.Y.2
  • 44
    • 84911903523 scopus 로고    scopus 로고
    • LncRNA directs cooperative epigenetic regulation downstream of chemokine signals
    • Xing Z., Lin A., Li C., Liang K., Wang S., Liu Y., Park P.K., Qin L., Wei Y., Hawke D.H., et al. lncRNA directs cooperative epigenetic regulation downstream of chemokine signals. Cell 2014, 159:1110-1125.
    • (2014) Cell , vol.159 , pp. 1110-1125
    • Xing, Z.1    Lin, A.2    Li, C.3    Liang, K.4    Wang, S.5    Liu, Y.6    Park, P.K.7    Qin, L.8    Wei, Y.9    Hawke, D.H.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.