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Volumn 15, Issue 1, 2015, Pages

Genome-wide identification and comparative analysis of the heat shock transcription factor family in Chinese white pear (Pyrus bretschneideri) and five other Rosaceae species

Author keywords

Evolution; Hsf; Pear; Rosaceae; Stress response; Transcriptome sequencing

Indexed keywords

EUKARYOTA; FRAGARIA VESCA; MALUS X DOMESTICA; PRUNUS MUME; PRUNUS PERSICA; PYRUS; PYRUS COMMUNIS; PYRUS X BRETSCHNEIDERI; ROSACEAE;

EID: 84938862728     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/s12870-014-0401-5     Document Type: Article
Times cited : (134)

References (83)
  • 3
    • 0020458787 scopus 로고
    • Plant productivity and environment
    • Boyer JS. Plant productivity and environment. Science. 1982;218(4571):443-8.
    • (1982) Science , vol.218 , Issue.4571 , pp. 443-448
    • Boyer, J.S.1
  • 4
    • 30144445464 scopus 로고    scopus 로고
    • Abiotic stress, the field environment and stress combination
    • Mittler R. Abiotic stress, the field environment and stress combination. Trends Plant Sci. 2006;11(1):15-9.
    • (2006) Trends Plant Sci , vol.11 , Issue.1 , pp. 15-19
    • Mittler, R.1
  • 5
    • 70349556428 scopus 로고    scopus 로고
    • From freezing to scorching, transcriptional responses to temperature variations in plants
    • Hua J. From freezing to scorching, transcriptional responses to temperature variations in plants. Curr Opin Plant Biol. 2009;12(5):568-73.
    • (2009) Curr Opin Plant Biol , vol.12 , Issue.5 , pp. 568-573
    • Hua, J.1
  • 6
    • 78649630901 scopus 로고    scopus 로고
    • Plant molecular stress responses face climate change
    • Ahuja I, de Vos RC, Bones AM, Hall RD. Plant molecular stress responses face climate change. Trends Plant Sci. 2010;15(12):664-74.
    • (2010) Trends Plant Sci , vol.15 , Issue.12 , pp. 664-674
    • Ahuja, I.1    Vos, R.C.2    Bones, A.M.3    Hall, R.D.4
  • 7
    • 84860322259 scopus 로고    scopus 로고
    • Signal transduction during cold, salt, and drought stresses in plants
    • Huang GT, Ma SL, Bai LP, Zhang L, Ma H, Jia P, et al. Signal transduction during cold, salt, and drought stresses in plants. Mol Biol Rep. 2012;39(2):969-87.
    • (2012) Mol Biol Rep , vol.39 , Issue.2 , pp. 969-987
    • Huang, G.T.1    Ma, S.L.2    Bai, L.P.3    Zhang, L.4    Ma, H.5    Jia, P.6
  • 8
    • 49449094955 scopus 로고    scopus 로고
    • Regulating the regulators: the future prospects for transcription-factor-based agricultural biotechnology products
    • Century K, Reuber TL, Ratcliffe OJ. Regulating the regulators: the future prospects for transcription-factor-based agricultural biotechnology products. Plant Physiol. 2008;147(1):20-9.
    • (2008) Plant Physiol , vol.147 , Issue.1 , pp. 20-29
    • Century, K.1    Reuber, T.L.2    Ratcliffe, O.J.3
  • 9
    • 80053102383 scopus 로고    scopus 로고
    • Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress
    • Chauhan H, Khurana N, Agarwal P, Khurana P. Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol Genet Genomics. 2011;286(2):171-87.
    • (2011) Mol Genet Genomics , vol.286 , Issue.2 , pp. 171-187
    • Chauhan, H.1    Khurana, N.2    Agarwal, P.3    Khurana, P.4
  • 10
    • 84875540370 scopus 로고    scopus 로고
    • Genome-wide analysis and molecular characterization of heat shock transcription factor family in Glycine max
    • Chung E, Kim KM, Lee JH. Genome-wide analysis and molecular characterization of heat shock transcription factor family in Glycine max. J Genet Genomics. 2013;40(3):127-35.
    • (2013) J Genet Genomics , vol.40 , Issue.3 , pp. 127-135
    • Chung, E.1    Kim, K.M.2    Lee, J.H.3
  • 11
    • 84872271861 scopus 로고    scopus 로고
    • A systematic view of rice heat shock transcription factor family using phylogenomic analysis
    • Jin GH, Gho HJ, Jung KH. A systematic view of rice heat shock transcription factor family using phylogenomic analysis. J Plant Physiol. 2013;170(3):321-9.
    • (2013) J Plant Physiol , vol.170 , Issue.3 , pp. 321-329
    • Jin, G.H.1    Gho, H.J.2    Jung, K.H.3
  • 12
    • 34648830573 scopus 로고    scopus 로고
    • The diversity of plant heat stress transcription factors
    • von Koskull-Döring P, Scharf K-D, Nover L. The diversity of plant heat stress transcription factors. Trends Plant Sci. 2007;12(10):452-7.
    • (2007) Trends Plant Sci , vol.12 , Issue.10 , pp. 452-457
    • Koskull-Döring, P.1    Scharf, K.-D.2    Nover, L.3
  • 13
    • 84856613886 scopus 로고    scopus 로고
    • The plant heat stress transcription factor (Hsf) family: structure, function and evolution
    • Scharf K-D, Berberich T, Ebersberger I, Nover L. The plant heat stress transcription factor (Hsf) family: structure, function and evolution. Biochim Biophys Acta. 2012;1819(2):104-19.
    • (2012) Biochim Biophys Acta , vol.1819 , Issue.2 , pp. 104-119
    • Scharf, K.-D.1    Berberich, T.2    Ebersberger, I.3    Nover, L.4
  • 15
    • 34347265817 scopus 로고    scopus 로고
    • Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways
    • Swindell WR, Huebner M, Weber AP. Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways. BMC Genomics. 2007;8(1):125.
    • (2007) BMC Genomics , vol.8 , Issue.1 , pp. 125
    • Swindell, W.R.1    Huebner, M.2    Weber, A.P.3
  • 16
    • 0037113973 scopus 로고    scopus 로고
    • A seed-specific heat-shock transcription factor involved in developmental regulation during embryogenesis in sunflower
    • Almoguera C, Rojas A, Diaz-Martin J, Prieto-Dapena P, Carranco R, Jordano J. A seed-specific heat-shock transcription factor involved in developmental regulation during embryogenesis in sunflower. J Biol Chem. 2002;277(46):43866-72.
    • (2002) J Biol Chem , vol.277 , Issue.46 , pp. 43866-43872
    • Almoguera, C.1    Rojas, A.2    Diaz-Martin, J.3    Prieto-Dapena, P.4    Carranco, R.5    Jordano, J.6
  • 17
    • 33644834880 scopus 로고    scopus 로고
    • Functional interaction between two transcription factors involved in the developmental regulation of a small heat stress protein gene promoter
    • Díaz-Martín J, Almoguera C, Prieto-Dapena P, Espinosa JM, Jordano J. Functional interaction between two transcription factors involved in the developmental regulation of a small heat stress protein gene promoter. Plant Physiol. 2005;139(3):1483-94.
    • (2005) Plant Physiol , vol.139 , Issue.3 , pp. 1483-1494
    • Díaz-Martín, J.1    Almoguera, C.2    Prieto-Dapena, P.3    Espinosa, J.M.4    Jordano, J.5
  • 18
    • 34248207000 scopus 로고    scopus 로고
    • A novel transcriptional cascade regulating expression of heat stress proteins during seed development of Arabidopsis
    • Kotak S, Vierling E, Bäumlein H, von Koskull-Döring P. A novel transcriptional cascade regulating expression of heat stress proteins during seed development of Arabidopsis. Plant Cell. 2007;19(1):182-95.
    • (2007) Plant Cell , vol.19 , Issue.1 , pp. 182-195
    • Kotak, S.1    Vierling, E.2    Bäumlein, H.3    Koskull-Döring, P.4
  • 19
    • 33750551504 scopus 로고    scopus 로고
    • Arabidopsis heat shock transcription factor A2 as a key regulator in response to several types of environmental stress
    • Nishizawa A, Yabuta Y, Yoshida E, Maruta T, Yoshimura K, Shigeoka S. Arabidopsis heat shock transcription factor A2 as a key regulator in response to several types of environmental stress. Plant J. 2006;48(4):535-47.
    • (2006) Plant J , vol.48 , Issue.4 , pp. 535-547
    • Nishizawa, A.1    Yabuta, Y.2    Yoshida, E.3    Maruta, T.4    Yoshimura, K.5    Shigeoka, S.6
  • 20
    • 33748143367 scopus 로고    scopus 로고
    • Could heat shock transcription factors function as hydrogen peroxide sensors in plants?
    • Miller G, Mittler R. Could heat shock transcription factors function as hydrogen peroxide sensors in plants? Ann Bot. 2006;98(2):279-88.
    • (2006) Ann Bot , vol.98 , Issue.2 , pp. 279-288
    • Miller, G.1    Mittler, R.2
  • 21
    • 75649125258 scopus 로고    scopus 로고
    • Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice
    • Shim D, Hwang J-U, Lee J, Lee S, Choi Y, An G, et al. Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice. Plant Cell. 2009;21(12):4031-43.
    • (2009) Plant Cell , vol.21 , Issue.12 , pp. 4031-4043
    • Shim, D.1    Hwang, J.-U.2    Lee, J.3    Lee, S.4    Choi, Y.5    An, G.6
  • 22
    • 0037097984 scopus 로고    scopus 로고
    • In the complex family of heat stress transcription factors, HsfA1 has a unique role as master regulator of thermotolerance in tomato
    • Mishra SK, Tripp J, Winkelhaus S, Tschiersch B, Theres K, Nover L, et al. In the complex family of heat stress transcription factors, HsfA1 has a unique role as master regulator of thermotolerance in tomato. Genes Dev. 2002;16(12):1555-67.
    • (2002) Genes Dev , vol.16 , Issue.12 , pp. 1555-1567
    • Mishra, S.K.1    Tripp, J.2    Winkelhaus, S.3    Tschiersch, B.4    Theres, K.5    Nover, L.6
  • 23
    • 33947635062 scopus 로고    scopus 로고
    • Regulation and functional analysis of ZmDREB2A in response to drought and heat stresses in Zea mays L
    • Qin F, Kakimoto M, Sakuma Y, Maruyama K, Osakabe Y, Tran LS, et al. Regulation and functional analysis of ZmDREB2A in response to drought and heat stresses in Zea mays L. Plant J. 2007;50(1):54-69.
    • (2007) Plant J , vol.50 , Issue.1 , pp. 54-69
    • Qin, F.1    Kakimoto, M.2    Sakuma, Y.3    Maruyama, K.4    Osakabe, Y.5    Tran, L.S.6
  • 24
    • 0034804489 scopus 로고    scopus 로고
    • Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need?
    • Nover L, Bharti K, Döring P, Mishra SK, Ganguli A, Scharf K-D. Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need? Cell Stress Chaperones. 2001;6(3):177.
    • (2001) Cell Stress Chaperones , vol.6 , Issue.3 , pp. 177
    • Nover, L.1    Bharti, K.2    Döring, P.3    Mishra, S.K.4    Ganguli, A.5    Scharf, K.-D.6
  • 25
    • 19944429077 scopus 로고    scopus 로고
    • Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors
    • Baniwal SK, Bharti K, Chan KY, Fauth M, Ganguli A, Kotak S, et al. Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors. J Biosci. 2004;29(4):471-87.
    • (2004) J Biosci , vol.29 , Issue.4 , pp. 471-487
    • Baniwal, S.K.1    Bharti, K.2    Chan, K.Y.3    Fauth, M.4    Ganguli, A.5    Kotak, S.6
  • 26
    • 0034143313 scopus 로고    scopus 로고
    • The role of AHA motifs in the activator function of tomato heat stress transcription factors HsfA1 and HsfA2
    • Döring P, Treuter E, Kistner C, Lyck R, Chen A, Nover L. The role of AHA motifs in the activator function of tomato heat stress transcription factors HsfA1 and HsfA2. Plant Cell. 2000;12(2):265-78.
    • (2000) Plant Cell , vol.12 , Issue.2 , pp. 265-278
    • Döring, P.1    Treuter, E.2    Kistner, C.3    Lyck, R.4    Chen, A.5    Nover, L.6
  • 27
    • 0027958045 scopus 로고
    • Crystal structure of the DNA binding domain of the heat shock transcription factor
    • Harrison CJ, Bohm AA, Nelson H. Crystal structure of the DNA binding domain of the heat shock transcription factor. Science. 1994;263(5144):224-7.
    • (1994) Science , vol.263 , Issue.5144 , pp. 224-227
    • Harrison, C.J.1    Bohm, A.A.2    Nelson, H.3
  • 28
    • 0033596861 scopus 로고    scopus 로고
    • Biochemical and biophysical characterization of the trimerization domain from the heat shock transcription factor
    • Peteranderl R, Rabenstein M, Shin Y-K, Liu CW, Wemmer DE, King DS, et al. Biochemical and biophysical characterization of the trimerization domain from the heat shock transcription factor. Biochemistry. 1999;38(12):3559-69.
    • (1999) Biochemistry , vol.38 , Issue.12 , pp. 3559-3569
    • Peteranderl, R.1    Rabenstein, M.2    Shin, Y.-K.3    Liu, C.W.4    Wemmer, D.E.5    King, D.S.6
  • 29
    • 0032535245 scopus 로고    scopus 로고
    • Regulation of the heat shock transcriptional response: cross talk between a family of heat shock factors, molecular chaperones, and negative regulators
    • Morimoto RI. Regulation of the heat shock transcriptional response: cross talk between a family of heat shock factors, molecular chaperones, and negative regulators. Genes Dev. 1998;12(24):3788-96.
    • (1998) Genes Dev , vol.12 , Issue.24 , pp. 3788-3796
    • Morimoto, R.I.1
  • 30
    • 17744372861 scopus 로고    scopus 로고
    • Roles of the heat shock transcription factors in regulation of the heat shock response and beyond
    • Pirkkala L, Nykänen P, Sistonen L. Roles of the heat shock transcription factors in regulation of the heat shock response and beyond. FASEB J. 2001;15(7):1118-31.
    • (2001) FASEB J , vol.15 , Issue.7 , pp. 1118-1131
    • Pirkkala, L.1    Nykänen, P.2    Sistonen, L.3
  • 31
    • 41749085508 scopus 로고    scopus 로고
    • Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis
    • Guo J, Wu J, Ji Q, Wang C, Luo L, Yuan Y, et al. Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis. J Genet Genomics. 2008;35(2):105.
    • (2008) J Genet Genomics , vol.35 , Issue.2 , pp. 105
    • Guo, J.1    Wu, J.2    Ji, Q.3    Wang, C.4    Luo, L.5    Yuan, Y.6
  • 32
    • 84869172142 scopus 로고    scopus 로고
    • Heat shock transcriptional factors in Malus domestica: identification, classification and expression analysis
    • Giorno F, Guerriero G, Baric S, Mariani C. Heat shock transcriptional factors in Malus domestica: identification, classification and expression analysis. BMC Genomics. 2012;13(1):1-13.
    • (2012) BMC Genomics , vol.13 , Issue.1 , pp. 1-13
    • Giorno, F.1    Guerriero, G.2    Baric, S.3    Mariani, C.4
  • 33
    • 84860340884 scopus 로고    scopus 로고
    • Genome-wide analysis of the heat shock transcription factors in Populus trichocarpa and Medicago truncatula
    • Wang F, Dong Q, Jiang H, Zhu S, Chen B, Xiang Y. Genome-wide analysis of the heat shock transcription factors in Populus trichocarpa and Medicago truncatula. Mol Biol Rep. 2012;39(2):1877-86.
    • (2012) Mol Biol Rep , vol.39 , Issue.2 , pp. 1877-1886
    • Wang, F.1    Dong, Q.2    Jiang, H.3    Zhu, S.4    Chen, B.5    Xiang, Y.6
  • 34
    • 84873386377 scopus 로고    scopus 로고
    • The genome of the pear (Pyrus bretschneideri Rehd.)
    • Wu J, Wang Z, Shi Z, Zhang S, Ming R, Zhu S, et al. The genome of the pear (Pyrus bretschneideri Rehd.). Genome Res. 2013;23(2):396-408.
    • (2013) Genome Res , vol.23 , Issue.2 , pp. 396-408
    • Wu, J.1    Wang, Z.2    Shi, Z.3    Zhang, S.4    Ming, R.5    Zhu, S.6
  • 36
    • 84875732837 scopus 로고    scopus 로고
    • Prevalent role of gene features in determining evolutionary fates of whole-genome duplication duplicated genes in flowering plants
    • Wk J, Yl L, Xia E, Lz G. Prevalent role of gene features in determining evolutionary fates of whole-genome duplication duplicated genes in flowering plants. Plant Physiol. 2013;161(4):1844-61.
    • (2013) Plant Physiol , vol.161 , Issue.4 , pp. 1844-1861
    • Wk, J.1    Yl, L.2    Xia, E.3    Lz, G.4
  • 37
  • 38
    • 33645509923 scopus 로고    scopus 로고
    • Evolution of Arabidopsis microRNA families through duplication events
    • Maher C, Stein L, Ware D. Evolution of Arabidopsis microRNA families through duplication events. Genome Res. 2006;16(4):510-9.
    • (2006) Genome Res , vol.16 , Issue.4 , pp. 510-519
    • Maher, C.1    Stein, L.2    Ware, D.3
  • 40
    • 65249143921 scopus 로고    scopus 로고
    • Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event
    • Fawcett JA, Maere S, Van de Peer Y. Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event. Proc Natl Acad Sci. 2009;106(14):5737-42.
    • (2009) Proc Natl Acad Sci , vol.106 , Issue.14 , pp. 5737-5742
    • Fawcett, J.A.1    Maere, S.2    Peer, Y.3
  • 41
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature. 2007;449(7161):463-7.
    • (2007) Nature , vol.449 , Issue.7161 , pp. 463-467
    • Jaillon, O.1    Aury, J.M.2    Noel, B.3    Policriti, A.4    Clepet, C.5    Casagrande, A.6
  • 43
    • 84878553926 scopus 로고    scopus 로고
    • The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
    • Verde I, Abbott AG, Scalabrin S, Jung S, Shu SQ, Marroni F, et al. The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nat Genet. 2013;45(5):487-U447.
    • (2013) Nat Genet , vol.45 , Issue.5 , pp. U447-U487
    • Verde, I.1    Abbott, A.G.2    Scalabrin, S.3    Jung, S.4    Shu, S.Q.5    Marroni, F.6
  • 44
    • 39049134682 scopus 로고    scopus 로고
    • Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data
    • Lemoine F, Lespinet O, Labedan B. Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data. BMC Evol Biol. 2007;7(1):237.
    • (2007) BMC Evol Biol , vol.7 , Issue.1 , pp. 237
    • Lemoine, F.1    Lespinet, O.2    Labedan, B.3
  • 45
    • 74549156240 scopus 로고    scopus 로고
    • Identification of mammalian orthologs using local synteny
    • Jun J, Mandoiu II, Nelson CE. Identification of mammalian orthologs using local synteny. BMC Genomics. 2009;10(1):630.
    • (2009) BMC Genomics , vol.10 , Issue.1 , pp. 630
    • Jun, J.1    Mandoiu, I.I.2    Nelson, C.E.3
  • 46
    • 84874556832 scopus 로고    scopus 로고
    • Genome-wide identification, molecular evolution and expression analyses of the phospholipase D gene family in three Rosaceae species
    • Du D, Cheng T, Pan H, Yang W, Wang J, Zhang Q. Genome-wide identification, molecular evolution and expression analyses of the phospholipase D gene family in three Rosaceae species. Sci Hortic. 2013;153:13-21.
    • (2013) Sci Hortic , vol.153 , pp. 13-21
    • Du, D.1    Cheng, T.2    Pan, H.3    Yang, W.4    Wang, J.5    Zhang, Q.6
  • 48
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 2007;24(8):1586-91.
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1586-1591
    • Yang, Z.1
  • 50
    • 67651039811 scopus 로고    scopus 로고
    • Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition
    • Freeling M. Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition. Annu Rev Plant Biol. 2009;60:433-53.
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 433-453
    • Freeling, M.1
  • 51
    • 82555185713 scopus 로고    scopus 로고
    • Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms
    • Wang YP, Wang XY, Tang HB, Tan X, Ficklin SP, Feltus FA, et al. Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms. PLoS One. 2011;6(12):e28150.
    • (2011) PLoS One , vol.6 , Issue.12 , pp. e28150
    • Wang, Y.P.1    Wang, X.Y.2    Tang, H.B.3    Tan, X.4    Ficklin, S.P.5    Feltus, F.A.6    Paterson, A.H.7
  • 52
    • 84880821930 scopus 로고    scopus 로고
    • Patterns of gene duplication and their contribution to expansion of gene families in grapevine
    • Wang N, Xiang Y, Fang L, Wang Y, Xin H, Li S. Patterns of gene duplication and their contribution to expansion of gene families in grapevine. Mol Biol Rep. 2013;31(4):852-61.
    • (2013) Mol Biol Rep , vol.31 , Issue.4 , pp. 852-861
    • Wang, N.1    Xiang, Y.2    Fang, L.3    Wang, Y.4    Xin, H.5    Li, S.6
  • 53
    • 84897441626 scopus 로고    scopus 로고
    • Evolution and expression analysis of the grape (Vitis vinifera L.) WRKY gene family
    • Guo C, Guo R, Xu X, Gao M, Li X, Song J, et al. Evolution and expression analysis of the grape (Vitis vinifera L.) WRKY gene family. J Exp Bot. 2014;65(6):1513-28.
    • (2014) J Exp Bot , vol.65 , Issue.6 , pp. 1513-1528
    • Guo, C.1    Guo, R.2    Xu, X.3    Gao, M.4    Li, X.5    Song, J.6
  • 56
    • 79251548912 scopus 로고    scopus 로고
    • Genome-wide identification, classification and analysis of heat shock transcription factor family in maize
    • Lin Y-X, Jiang H-Y, Chu Z-X, Tang X-L, Zhu S-W, Cheng B-J. Genome-wide identification, classification and analysis of heat shock transcription factor family in maize. BMC Genomics. 2011;12(1):76.
    • (2011) BMC Genomics , vol.12 , Issue.1 , pp. 76
    • Lin, Y.-X.1    Jiang, H.-Y.2    Chu, Z.-X.3    Tang, X.-L.4    Zhu, S.-W.5    Cheng, B.-J.6
  • 57
    • 36549038087 scopus 로고    scopus 로고
    • Consequences of genome duplication
    • Sémon M, Wolfe KH. Consequences of genome duplication. Curr Opin Genet Dev. 2007;17(6):505-12.
    • (2007) Curr Opin Genet Dev , vol.17 , Issue.6 , pp. 505-512
    • Sémon, M.1    Wolfe, K.H.2
  • 58
    • 3142732892 scopus 로고    scopus 로고
    • Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
    • Blanc G, Wolfe KH. Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell. 2004;16(7):1679-91.
    • (2004) Plant Cell , vol.16 , Issue.7 , pp. 1679-1691
    • Blanc, G.1    Wolfe, K.H.2
  • 59
    • 4444363053 scopus 로고    scopus 로고
    • Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome
    • Seoighe C, Gehring C. Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome. Trends Genet. 2004;20(10):461-4.
    • (2004) Trends Genet , vol.20 , Issue.10 , pp. 461-464
    • Seoighe, C.1    Gehring, C.2
  • 60
    • 75549087305 scopus 로고    scopus 로고
    • The evolution of gene duplications: classifying and distinguishing between models
    • Innan H, Kondrashov F. The evolution of gene duplications: classifying and distinguishing between models. Nat Rev Genet. 2010;11(2):97-108.
    • (2010) Nat Rev Genet , vol.11 , Issue.2 , pp. 97-108
    • Innan, H.1    Kondrashov, F.2
  • 61
    • 18944364299 scopus 로고    scopus 로고
    • A survey of tricolpate (eudicot) phylogenetic relationships
    • Judd WS, Olmstead RG. A survey of tricolpate (eudicot) phylogenetic relationships. Am J Bot. 2004;91(10):1627-44.
    • (2004) Am J Bot , vol.91 , Issue.10 , pp. 1627-1644
    • Judd, W.S.1    Olmstead, R.G.2
  • 62
    • 12744274644 scopus 로고    scopus 로고
    • Identification of novel heat shock factor dependent genes and biochemical pathways in Arabidopsis thaliana
    • Busch W, Wunderlich M, Schöffl F. Identification of novel heat shock factor dependent genes and biochemical pathways in Arabidopsis thaliana. Plant J. 2005;41(1):1-14.
    • (2005) Plant J , vol.41 , Issue.1 , pp. 1-14
    • Busch, W.1    Wunderlich, M.2    Schöffl, F.3
  • 63
    • 1542374539 scopus 로고    scopus 로고
    • Two different heat shock transcription factors regulate immediate early expression of stress genes in Arabidopsis
    • Lohmann C, Eggers-Schumacher G, Wunderlich M, Schöffl F. Two different heat shock transcription factors regulate immediate early expression of stress genes in Arabidopsis. Mol Gen Genomics. 2004;271(1):11-21.
    • (2004) Mol Gen Genomics , vol.271 , Issue.1 , pp. 11-21
    • Lohmann, C.1    Eggers-Schumacher, G.2    Wunderlich, M.3    Schöffl, F.4
  • 64
    • 33846345430 scopus 로고    scopus 로고
    • A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis
    • Y-y C, H-c L, N-y L, W-t C, C-n W, S-h C, et al. A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis. Plant Physiol. 2007;143(1):251-62.
    • (2007) Plant Physiol , vol.143 , Issue.1 , pp. 251-262
    • Y-y, C.1    H-c, L.2    N-y, L.3    W-t, C.4    C-n, W.5    S-h, C.6
  • 65
    • 67651216183 scopus 로고    scopus 로고
    • Arabidopsis ROF1 (FKBP62) modulates thermotolerance by interacting with HSP90. 1 and affecting the accumulation of HsfA2 regulated sHSPs
    • Meiri D, Breiman A. Arabidopsis ROF1 (FKBP62) modulates thermotolerance by interacting with HSP90. 1 and affecting the accumulation of HsfA2 regulated sHSPs. Plant J. 2009;59(3):387-99.
    • (2009) Plant J , vol.59 , Issue.3 , pp. 387-399
    • Meiri, D.1    Breiman, A.2
  • 66
    • 0033815072 scopus 로고    scopus 로고
    • Plants contain a novel multi-member class of heat shock factors without transcriptional activator potential
    • Czarnecka-Verner E, Yuan C-X, Scharf K-D, Englich G, Gurley WB. Plants contain a novel multi-member class of heat shock factors without transcriptional activator potential. Plant Mol Biol. 2000;43(4):459-71.
    • (2000) Plant Mol Biol , vol.43 , Issue.4 , pp. 459-471
    • Czarnecka-Verner, E.1    Yuan, C.-X.2    Scharf, K.-D.3    Englich, G.4    Gurley, W.B.5
  • 67
    • 80455140394 scopus 로고    scopus 로고
    • Arabidopsis HsfB1 and HsfB2b act as repressors of the expression of heat-inducible Hsfs but positively regulate the acquired thermotolerance
    • Ikeda M, Mitsuda N, Ohme-Takagi M. Arabidopsis HsfB1 and HsfB2b act as repressors of the expression of heat-inducible Hsfs but positively regulate the acquired thermotolerance. Plant Physiol. 2011;157(3):1243-54.
    • (2011) Plant Physiol , vol.157 , Issue.3 , pp. 1243-1254
    • Ikeda, M.1    Mitsuda, N.2    Ohme-Takagi, M.3
  • 68
    • 2942633709 scopus 로고    scopus 로고
    • Tomato heat stress transcription factor HsfB1 represents a novel type of general transcription coactivator with a histone-like motif interacting with the plant CREB binding protein ortholog HAC1
    • Bharti K, von Koskull-Döring P, Bharti S, Kumar P, Tintschl-Körbitzer A, Treuter E, et al. Tomato heat stress transcription factor HsfB1 represents a novel type of general transcription coactivator with a histone-like motif interacting with the plant CREB binding protein ortholog HAC1. Plant Cell. 2004;16(6):1521-35.
    • (2004) Plant Cell , vol.16 , Issue.6 , pp. 1521-1535
    • Bharti, K.1    Koskull-Döring, P.2    Bharti, S.3    Kumar, P.4    Tintschl-Körbitzer, A.5    Treuter, E.6
  • 69
    • 67649506184 scopus 로고    scopus 로고
    • Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses
    • Mittal D, Chakrabarti S, Sarkar A, Singh A, Grover A. Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses. Plant Physiol Biochem. 2009;47(9):785-95.
    • (2009) Plant Physiol Biochem , vol.47 , Issue.9 , pp. 785-795
    • Mittal, D.1    Chakrabarti, S.2    Sarkar, A.3    Singh, A.4    Grover, A.5
  • 70
    • 0032126562 scopus 로고    scopus 로고
    • Expression levels of heat shock factors are not functionally coupled to the rate of expression of heat shock genes
    • Victor M, Benecke B-J. Expression levels of heat shock factors are not functionally coupled to the rate of expression of heat shock genes. Mol Biol Rep. 1998;25(3):135-41.
    • (1998) Mol Biol Rep , vol.25 , Issue.3 , pp. 135-141
    • Victor, M.1    Benecke, B.-J.2
  • 73
    • 80055082271 scopus 로고    scopus 로고
    • Accelerated Profile HMM Searches
    • Eddy SR. Accelerated Profile HMM Searches. PLoS Comput Biol. 2011;7(10):e1002195.
    • (2011) PLoS Comput Biol , vol.7 , Issue.10 , pp. e1002195
    • Eddy, S.R.1
  • 74
    • 0034331073 scopus 로고    scopus 로고
    • Finding nuclear localization signals
    • Cokol M, Nair R, Rost B. Finding nuclear localization signals. EMBO Rep. 2000;1(5):411-5.
    • (2000) EMBO Rep , vol.1 , Issue.5 , pp. 411-415
    • Cokol, M.1    Nair, R.2    Rost, B.3
  • 76
    • 33747823564 scopus 로고    scopus 로고
    • MEME: discovering and analyzing DNA and protein sequence motifs
    • Bailey TL, Williams N, Misleh C, Li WW. MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res. 2006;34 suppl 2:W369-73.
    • (2006) Nucleic Acids Res , vol.34 , pp. W369-W373
    • Bailey, T.L.1    Williams, N.2    Misleh, C.3    Li, W.W.4
  • 78
    • 54449091448 scopus 로고    scopus 로고
    • GSDS: a gene structure display server
    • Guo A-Y, Zhu Q-H, Chen X, Luo J-C. GSDS: a gene structure display server. Yi Chuan. 2007;29(8):1023.
    • (2007) Yi Chuan , vol.29 , Issue.8 , pp. 1023
    • Guo, A.-Y.1    Zhu, Q.-H.2    Chen, X.3    Luo, J.-C.4
  • 79
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: Molecular Evolutionary Genetics Analysis version 6.0
    • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol. 2013;30(12):2725-9.
    • (2013) Mol Biol Evol , vol.30 , Issue.12 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 80
    • 84876531652 scopus 로고    scopus 로고
    • PGDD: a database of gene and genome duplication in plants
    • Lee TH, Tang HB, Wang XY, Paterson AH. PGDD: a database of gene and genome duplication in plants. Nucleic Acids Res. 2013;41(D1):D1152-8.
    • (2013) Nucleic Acids Res , vol.41 , Issue.D1 , pp. D1152-D1158
    • Lee, T.H.1    Tang, H.B.2    Wang, X.Y.3    Paterson, A.H.4
  • 81
    • 57149102681 scopus 로고    scopus 로고
    • Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
    • Tang HB, Wang XY, Bowers JE, Ming R, Alam M, Paterson AH. Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. Genome Res. 2008;18(12):1944-54.
    • (2008) Genome Res , vol.18 , Issue.12 , pp. 1944-1954
    • Tang, H.B.1    Wang, X.Y.2    Bowers, J.E.3    Ming, R.4    Alam, M.5    Paterson, A.H.6
  • 83
    • 77951682635 scopus 로고    scopus 로고
    • KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies
    • Wang D, Zhang Y, Zhang Z, Zhu J, Yu J. KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies. Genomics Proteomics Bioinformatics. 2010;8(1):77-80.
    • (2010) Genomics Proteomics Bioinformatics , vol.8 , Issue.1 , pp. 77-80
    • Wang, D.1    Zhang, Y.2    Zhang, Z.3    Zhu, J.4    Yu, J.5


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