Heat shock factor gene family in rice: Genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses

Plant Physiology and Biochemistry

Volumn 47, Issue 9, 2009, Pages 785-795

  Mittal, Dheeraj ^a   Chakrabarti, Sveta ^a   Sarkar, Anshuk ^a   Singh, Amanjot ^a   Grover, Anil ^a  

^a UNIVERSITY OF DELHI   (India)

Author keywords

Heat shock factor; High temperature; Low temperature; Oxidative stress; Transcript expression profile

Indexed keywords

MESSENGER RNA;

ARTICLE; COLD; DNA MICROARRAY; EXPRESSED SEQUENCE TAG; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; HEAT; HEAT SHOCK RESPONSE; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OXIDATIVE STRESS; PHYLOGENY; PLANT GENOME; PROTEIN TERTIARY STRUCTURE; RICE;

BASE SEQUENCE; COLD TEMPERATURE; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENOME, PLANT; HEAT-SHOCK RESPONSE; HOT TEMPERATURE; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; ORYZA SATIVA; OXIDATIVE STRESS; PHYLOGENY; PROTEIN STRUCTURE, TERTIARY; RNA, MESSENGER;

EID: 67649506184     PISSN: 09819428     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plaphy.2009.05.003     Document Type: Article

References (39)

1. Pelham H.R. A regulatory upstream promoter element in the Drosophila hsp 70 heat-shock gene. Cell 30 (1982) 517-528
2. von Koskull-Doring P., Scharf K.D., and Nover L. The diversity of plant heat stress transcription factors. Trends Plant Sci. 12 (2007) 452-457
3. Kotak S., Port M., Ganguli A., Bicker F., and von Koskull-Doring P. Characterization of C-terminal domains of Arabidopsis heat stress transcription factors (Hsfs) and identification of a new signature combination of plant class a Hsfs with AHA and NES motifs essential for activator function and intracellular localization. Plant J. 39 (2004) 98-112
4. Nover L., Bharti K., Doring P., Mishra S.K., Ganguli A., and Scharf K.D. Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need?. Cell Stress Chaperones 6 (2001) 177-189
5. Schoffl F., Busch W., Kumar M., and Panikulangara T. Identification of heat shock factor regulated genes and pathways. In: Koebner R., and Varshney R. (Eds). Model Plants-crop Improvement (2006), CRC Press, Boca Raton, USA 227-247
6. Fujita M., Fujita Y., Noutoshi Y., Takahashi F., Narusaka Y., Yamaguchi-Shinozaki K., and Shinozaki K. Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks. Curr. Opin. Plant Biol. 9 (2006) 436-442
7. Miller G., Shulaev V., and Mittler R. Reactive oxygen signaling and abiotic stress. Physiol. Plant. 133 (2008) 481-489
8. Panchuk II, Volkov R.A., and Schoffl F. Heat stress- and heat shock transcription factor-dependent expression and activity of ascorbate peroxidase in Arabidopsis. Plant Physiol. 129 (2002) 838-853
9. Gadjev I., Vanderauwera S., Gechev T.S., Laloi C., Minkov I.N., Shulaev V., Apel K., Inze D., Mittler R., and Van Breusegem F. Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis. Plant Physiol. 141 (2006) 436-445
10. Miller G., and Mittler R. Could heat shock transcription factors function as hydrogen peroxide sensors in plants?. Ann. Bot. 98 (2006) 279-288
11. Grover A., Aggarwal P.K., Kapoor A., Katiyar-Agarwal S., Agarwal M., and Chandramouli A. Addressing abiotic stresses in agriculture through transgenic technology. Curr. Sci. 84 (2003) 355-367
12. Grover A., Chandramouli A., Agarwal S., Katiyar-Agarwal S., Agarwal M., and Sahi C. Transgenic rice for tolerance against abiotic stresses. In: Datta S.K. (Ed). Rice Improvement in the Genomic Era (2009), Hawarth Press, USA 237-267
13. Charng Y.Y., Liu H.C., Liu N.Y., Chi W.T., Wang C.N., Chang S.H., and Wang T.T. A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis. Plant Physiol. 143 (2007) 251-262
14. Sakuma Y., Maruyama K., Qin F., Osakabe Y., Shinozaki K., and Yamaguchi-Shinozaki K. Dual function of an Arabidopsis transcription factor DREB2A in water-stress-responsive and heat-stress-responsive gene expression. Proc. Natl. Acad. Sci. U.S.A. 103 (2006) 18822-18827
15. Schramm F., Larkindale J., Kiehlmann E., Ganguli A., Englich G., Vierling E., and von Koskull-Doring P. A cascade of transcription factor DREB2A and heat stress transcription factor HsfA3 regulates the heat stress response of Arabidopsis. Plant J. 53 (2008) 264-274
16. Yoshida T., Sakuma Y., Todaka D., Maruyama K., Qin F., Mizoi J., Kidokoro S., Fujita Y., Shinozaki K., and Yamaguchi-Shinozaki K. Functional analysis of an Arabidopsis heat-shock transcription factor HsfA3 in the transcriptional cascade downstream of the DREB2A stress-regulatory system. Biochem. Biophys. Res. Commun. 368 (2008) 515-521
17. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
18. Guan J.C., Jinn T.L., Yeh C.H., Feng S.P., Chen Y.M., and Lin C.Y. Characterization of the genomic structures and selective expression profiles of nine class I small heat shock protein genes clustered on two chromosomes in rice (Oryza sativa L.). Plant Mol. Biol. 56 (2004) 795-809
19. Lee B.H., Won S.H., Lee H.S., Miyao M., Chung W.I., Kim I.J., and Jo J. Expression of the chloroplast-localized small heat shock protein by oxidative stress in rice. Gene 245 (2000) 283-290
20. Agarwal M., Sahi C., Katiyar-Agarwal S., Agarwal S., Young T., Gallie D.R., Sharma V.M., Ganesan K., and Grover A. Molecular characterization of rice hsp101: complementation of yeast hsp104 mutation by disaggregation of protein granules and differential expression in indica and japonica rice types. Plant Mol. Biol. 51 (2003) 543-553
21. Chen J.Q., Dong Y., Wang Y.J., Liu Q., Zhang J.S., and Chen S.Y. An AP2/EREBP-type transcription-factor gene from rice is cold-inducible and encodes a nuclear-localized protein. Theor. Appl. Genet. 107 (2003) 972-979
22. Dubouzet J.G., Sakuma Y., Ito Y., Kasuga M., Dubouzet E.G., Miura S., Seki M., Shinozaki K., and Yamaguchi-Shinozaki K. OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J. 33 (2003) 751-763
23. Liu K., Wang L., Xu Y., Chen N., Ma Q., Li F., and Chong K. Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice. Planta 226 (2007) 1007-1016
24. Hong C.Y., Hsu Y.T., Tsai Y.C., and Kao C.H. Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl. J. Exp. Bot. 58 (2007) 3273-3283
25. Tsukamoto S., Morita S., Hirano E., Yokoi H., Masumura T., and Tanaka K. A novel cis-element that is responsive to oxidative stress regulates three antioxidant defense genes in rice. Plant Physiol. 137 (2004) 317-327
26. Sambrook J., and Russell R. Molecular Cloning: a Laboratory Manual (2001), Cold Spring Harbor Press, Cold Spring Harbor
27. Zimmermann P., Hennig L., and Gruissem W. Gene-expression analysis and network discovery using genevestigator. Trends Plant Sci. 10 (2005) 407-409
28. Shen Q.J., Casaretto J.A., Zhang P., and Ho T.H. Functional definition of ABA-response complexes: the promoter units necessary and sufficient for ABA induction of gene expression in barley (Hordeum vulgare L.). Plant Mol. Biol. 54 (2004) 111-124
29. Jiang C., Iu B., and Singh J. Requirement of a CCGAC cis-acting element for cold induction of the BN115 gene from winter Brassica napus. Plant Mol. Biol. 30 (1996) 679-684
30. Baniwal S.K., Bharti K., Chan K.Y., Fauth M., Ganguli A., Kotak S., Mishra S.K., Nover L., Port M., Scharf K.D., Tripp J., Weber C., Zielinski D., and von Koskull-Doring P. Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors. J. Biosci. 29 (2004) 471-487
31. Guo J., Wu J., Ji Q., Wang C., Luo L., Yuan Y., Wang Y., and Wang J. Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis. J. Genet. Genomics 35 (2008) 105-118
32. Swindell W.R., Huebner M., and Weber A.P. Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways. BMC Genomics 8 (2007) 125
33. Almoguera C., Rojas A., Diaz-Martin J., Prieto-Dapena P., Carranco R., and Jordano J. A seed-specific heat-shock transcription factor involved in developmental regulation during embryogenesis in sunflower. J. Biol. Chem. 277 (2002) 43866-43872
34. Kotak S., Vierling E., Baumlein H., and von Koskull-Doring P. A novel transcriptional cascade regulating expression of heat stress proteins during seed development of Arabidopsis. Plant Cell 19 (2007) 182-195
35. Busch W., Wunderlich M., and Schoffl F. Identification of novel heat shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana. Plant J. 41 (2005) 1-14
36. Mishra S.K., Tripp J., Winkelhaus S., Tschiersch B., Theres K., Nover L., and Scharf K.D. In the complex family of heat stress transcription factors, HsfA1 has a unique role as master regulator of thermotolerance in tomato. Genes Dev. 16 (2002) 1555-1567
37. Hahn J.S., Hu Z., Thiele D.J., and Iyer V.R. Genome-wide analysis of the biology of stress responses through heat shock transcription factor. Mol. Cell. Biol. 24 (2004) 5249-5256
38. Singh A., and Grover A. Genetic engineering for heat tolerance in plants. Physiol. Mol. Biol. Plants 14 (2008) 155-166
39. Yokotani N., Ichikawa T., Kondou Y., Matsui M., Hirochika H., Iwabuchi M., and Oda K. Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis. Planta 227 (2008) 957-967