-
1
-
-
67849122320
-
MEME SUITE: tools for motif discovery and searching
-
Bailey T.L., Boden M., Buske F.A., Frith M., Grant C.E., Clementi L., Ren J., Li W.W., Noble W.S. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 2009, 37:W202-W208.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
2
-
-
0031877016
-
Combining evidence using p-values: application to sequence homology searches
-
Bailey T.L., Gribskov M. Combining evidence using p-values: application to sequence homology searches. Bioinformatics 1998, 14:48-54.
-
(1998)
Bioinformatics
, vol.14
, pp. 48-54
-
-
Bailey, T.L.1
Gribskov, M.2
-
4
-
-
66249125350
-
Reassessing the role of phospholipase D in the Arabidopsis wounding response
-
Bargmann B.O.R., Laxalt A.M., Ter Riet B., Testerink C., Merquiol E., Mosblech A., Leon-Reyes A., Pieterse C.M.J., Haring M.A., Heilmann I., Bartels D., Munnik T. Reassessing the role of phospholipase D in the Arabidopsis wounding response. Plant Cell Environ. 2009, 32:837-850.
-
(2009)
Plant Cell Environ.
, vol.32
, pp. 837-850
-
-
Bargmann, B.O.R.1
Laxalt, A.M.2
Ter Riet, B.3
Testerink, C.4
Merquiol, E.5
Mosblech, A.6
Leon-Reyes, A.7
Pieterse, C.M.J.8
Haring, M.A.9
Heilmann, I.10
Bartels, D.11
Munnik, T.12
-
5
-
-
58449085005
-
Multiple PLDs required for high salinity and water deficit tolerance in plants
-
Bargmann B.O.R., Laxalt A.M., ter Riet B., van Schooten B., Merquiol E., Testerink C., Haring M.A., Bartels D., Munnik T. Multiple PLDs required for high salinity and water deficit tolerance in plants. Plant Cell Physiol. 2009, 50:78-89.
-
(2009)
Plant Cell Physiol.
, vol.50
, pp. 78-89
-
-
Bargmann, B.O.R.1
Laxalt, A.M.2
ter Riet, B.3
van Schooten, B.4
Merquiol, E.5
Testerink, C.6
Haring, M.A.7
Bartels, D.8
Munnik, T.9
-
6
-
-
84878365233
-
Genome-wide identification and analysis of late embryogenesis abundant (LEA) genes in Prunus mume
-
Du D., Zhang Q., Cheng T., Pan H., Yang W., Sun L. Genome-wide identification and analysis of late embryogenesis abundant (LEA) genes in Prunus mume. Mol. Biol. Rep. 2012, 10.1007/s11033-012-2250-3.
-
(2012)
Mol. Biol. Rep.
-
-
Du, D.1
Zhang, Q.2
Cheng, T.3
Pan, H.4
Yang, W.5
Sun, L.6
-
7
-
-
79959931985
-
HMMER web server: interactive sequence similarity searching
-
Finn R.D., Clements J., Eddy S.R. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 2011, 39:W29-W37.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
8
-
-
75549090603
-
The Pfam protein families database
-
Finn R.D., Mistry J., Tate J., Coggill P., Heger A., Pollington J.E., Gavin O.L., Gunasekaran P., Ceric G., Forslund K., Holm L., Sonnhammer E.L.L., Eddy S.R., Bateman A. The Pfam protein families database. Nucleic Acids Res. 2010, 38:D211-D222.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
Holm, L.11
Sonnhammer, E.L.L.12
Eddy, S.R.13
Bateman, A.14
-
9
-
-
0033980712
-
Water deficit triggers phospholipase D activity in the resurrection plant Craterostigma plantagineum
-
Frank W., Munnik T., Kerkmann K., Salamini F., Bartels D. Water deficit triggers phospholipase D activity in the resurrection plant Craterostigma plantagineum. Plant Cell 2000, 12:111-124.
-
(2000)
Plant Cell
, vol.12
, pp. 111-124
-
-
Frank, W.1
Munnik, T.2
Kerkmann, K.3
Salamini, F.4
Bartels, D.5
-
10
-
-
67651202628
-
Change of gene structure and function by non-homologous end-joining, homologous recombination, and transposition of DNA
-
Goettel W., Messing J. Change of gene structure and function by non-homologous end-joining, homologous recombination, and transposition of DNA. PLoS Genet. 2009, 5:e1000516.
-
(2009)
PLoS Genet.
, vol.5
-
-
Goettel, W.1
Messing, J.2
-
11
-
-
54449091448
-
GSDS: a gene structure display server
-
Guo A.-Y., Zhu Q.-H., Chen X., Luo J.-C. GSDS: a gene structure display server. Yi Chuan 2007, 29:1023-1026.
-
(2007)
Yi Chuan
, vol.29
, pp. 1023-1026
-
-
Guo, A.-Y.1
Zhu, Q.-H.2
Chen, X.3
Luo, J.-C.4
-
12
-
-
0029564902
-
Human ADP-ribosylation factor-activated phosphatidylcholine-specific phospholipase D defines a new and highly conserved gene family
-
Hammond S.M., Altshuller Y.M., Sung T.C., Rudge S.A., Rose K., Engebrecht J., Morris A.J., Frohman M.A. Human ADP-ribosylation factor-activated phosphatidylcholine-specific phospholipase D defines a new and highly conserved gene family. J. Biol. Chem. 1995, 270:29640-29643.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 29640-29643
-
-
Hammond, S.M.1
Altshuller, Y.M.2
Sung, T.C.3
Rudge, S.A.4
Rose, K.5
Engebrecht, J.6
Morris, A.J.7
Frohman, M.A.8
-
13
-
-
66149187110
-
Phospholipase D epsilon and phosphatidic acid enhance Arabidopsis nitrogen signaling and growth
-
Hong Y., Devaiah S.P., Bahn S.C., Thamasandra B.N., Li M., Welti R., Wang X. Phospholipase D epsilon and phosphatidic acid enhance Arabidopsis nitrogen signaling and growth. Plant J. 2009, 58:376-387.
-
(2009)
Plant J.
, vol.58
, pp. 376-387
-
-
Hong, Y.1
Devaiah, S.P.2
Bahn, S.C.3
Thamasandra, B.N.4
Li, M.5
Welti, R.6
Wang, X.7
-
14
-
-
48249089753
-
Phospholipase D alpha 3 is involved in the hyperosmotic response in Arabidopsis
-
Hong Y., Pan X., Welti R., Wang X. Phospholipase D alpha 3 is involved in the hyperosmotic response in Arabidopsis. Plant Cell 2008, 20:803-816.
-
(2008)
Plant Cell
, vol.20
, pp. 803-816
-
-
Hong, Y.1
Pan, X.2
Welti, R.3
Wang, X.4
-
15
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F., Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J., Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E., Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M., Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M., Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E., Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M., Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G., Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F., Wincker P. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007, 449:463-465.
-
(2007)
Nature
, vol.449
, pp. 463-465
-
-
Jaillon, O.1
Aury, J.-M.2
Noel, B.3
Policriti, A.4
Clepet, C.5
Casagrande, A.6
Choisne, N.7
Aubourg, S.8
Vitulo, N.9
Jubin, C.10
Vezzi, A.11
Legeai, F.12
Hugueney, P.13
Dasilva, C.14
Horner, D.15
Mica, E.16
Jublot, D.17
Poulain, J.18
Bruyere, C.19
Billault, A.20
Segurens, B.21
Gouyvenoux, M.22
Ugarte, E.23
Cattonaro, F.24
Anthouard, V.25
Vico, V.26
Del Fabbro, C.27
Alaux, M.28
Di Gaspero, G.29
Dumas, V.30
Felice, N.31
Paillard, S.32
Juman, I.33
Moroldo, M.34
Scalabrin, S.35
Canaguier, A.36
Le Clainche, I.37
Malacrida, G.38
Durand, E.39
Pesole, G.40
Laucou, V.41
Chatelet, P.42
Merdinoglu, D.43
Delledonne, M.44
Pezzotti, M.45
Lecharny, A.46
Scarpelli, C.47
Artiguenave, F.48
Pe, M.E.49
Valle, G.50
Morgante, M.51
Caboche, M.52
Adam-Blondon, A.-F.53
Weissenbach, J.54
Quetier, F.55
Wincker, P.56
more..
-
16
-
-
74549156240
-
Identification of mammalian orthologs using local synteny
-
Jun J., Mandoiu I., Nelson C. Identification of mammalian orthologs using local synteny. BMC Genom. 2009, 10:630.
-
(2009)
BMC Genom.
, vol.10
, pp. 630
-
-
Jun, J.1
Mandoiu, I.2
Nelson, C.3
-
17
-
-
38549093645
-
GDR (genome database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data
-
Jung S., Staton M., Lee T., Blenda A., Svancara R., Abbott A., Main D. GDR (genome database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data. Nucleic Acids Res. 2008, 36:D1034-D1040.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Jung, S.1
Staton, M.2
Lee, T.3
Blenda, A.4
Svancara, R.5
Abbott, A.6
Main, D.7
-
18
-
-
84866368570
-
Effects of salicylic and jasmonic acid on phospholipase D activity and the level of active oxygen species in soybean seedlings
-
Kalachova T.A., Iakovenko O.M., Kretinin S.V., Kravets V.S. Effects of salicylic and jasmonic acid on phospholipase D activity and the level of active oxygen species in soybean seedlings. Biochemistry-Moscow 2012, 6:243-248.
-
(2012)
Biochemistry-Moscow
, vol.6
, pp. 243-248
-
-
Kalachova, T.A.1
Iakovenko, O.M.2
Kretinin, S.V.3
Kravets, V.S.4
-
19
-
-
0033950079
-
The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains
-
Kay B.K., Williamson M.P., Sudol M. The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains. FASEB J. 2000, 14:231-241.
-
(2000)
FASEB J.
, vol.14
, pp. 231-241
-
-
Kay, B.K.1
Williamson, M.P.2
Sudol, M.3
-
20
-
-
3543035281
-
Effect of tobacco mosaic virus on phospholipid content and phospholipase D activity in tobacco leaves
-
Kotel'nikova I.M., Nekrasov E.V., Krylov A.V. Effect of tobacco mosaic virus on phospholipid content and phospholipase D activity in tobacco leaves. Russ. J. Plant Physiol. 2004, 51:63-69.
-
(2004)
Russ. J. Plant Physiol.
, vol.51
, pp. 63-69
-
-
Kotel'nikova, I.M.1
Nekrasov, E.V.2
Krylov, A.V.3
-
21
-
-
36448991500
-
Clustal W and clustal X version 2.0
-
Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J., Higgins D.G. Clustal W and clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
22
-
-
0035952336
-
Cloning and direct G-protein regulation of phospholipase D from tobacco
-
Lein W., Saalbach G. Cloning and direct G-protein regulation of phospholipase D from tobacco. Biochim. Biophys. Acta 2001, 1530:172-183.
-
(2001)
Biochim. Biophys. Acta
, vol.1530
, pp. 172-183
-
-
Lein, W.1
Saalbach, G.2
-
23
-
-
0034663568
-
Signal-dependent membrane targeting by pleckstrin homology (PH) domains
-
Lemmon M.A., Ferguson K.M. Signal-dependent membrane targeting by pleckstrin homology (PH) domains. Biochem. J. 2000, 350 Pt 1:1-18.
-
(2000)
Biochem. J.
, pp. 1-18
-
-
Lemmon, M.A.1
Ferguson, K.M.2
-
24
-
-
39049134682
-
Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data
-
Lemoine F., Lespinet O., Labedan B. Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data. BMC Evol. Biol. 2007, 7:237.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 237
-
-
Lemoine, F.1
Lespinet, O.2
Labedan, B.3
-
26
-
-
35348870340
-
Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLD beta 1 in seed germination
-
Li G., Lin F., Xue H.-W. Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLD beta 1 in seed germination. Cell Res. 2007, 17:881-894.
-
(2007)
Cell Res.
, vol.17
, pp. 881-894
-
-
Li, G.1
Lin, F.2
Xue, H.-W.3
-
27
-
-
68949135287
-
Phospholipase D- and phosphatidic acid-mediated signaling in plants
-
Li M., Hong Y., Wang X. Phospholipase D- and phosphatidic acid-mediated signaling in plants. BBA-Mol. Cell Bio. L. 2009, 1791:927-935.
-
(2009)
BBA-Mol. Cell Bio. L.
, vol.1791
, pp. 927-935
-
-
Li, M.1
Hong, Y.2
Wang, X.3
-
28
-
-
1842477452
-
The plasma membrane-bound phospholipase D delta enhances freezing tolerance in Arabidopsis thaliana
-
Li W.Q., Li M.Y., Zhang W.H., Welti R., Wang X.M. The plasma membrane-bound phospholipase D delta enhances freezing tolerance in Arabidopsis thaliana. Nat. Biotechnol. 2004, 22:427-433.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 427-433
-
-
Li, W.Q.1
Li, M.Y.2
Zhang, W.H.3
Welti, R.4
Wang, X.M.5
-
29
-
-
33747863300
-
SWAKK: a web server for detecting positive selection in proteins using a sliding window substitution rate analysis
-
Liang H., Zhou W., Landweber L.F. SWAKK: a web server for detecting positive selection in proteins using a sliding window substitution rate analysis. Nucleic Acids Res. 2006, 34:W382-W384.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Liang, H.1
Zhou, W.2
Landweber, L.F.3
-
30
-
-
56949085115
-
Molecular cloning and expression analysis of an arginine decarboxylase gene from peach (Prunus persica)
-
Liu J.H., Ban Y., Wen X.-P., Nakajima I., Moriguchi T. Molecular cloning and expression analysis of an arginine decarboxylase gene from peach (Prunus persica). Gene 2009, 429:10-17.
-
(2009)
Gene
, vol.429
, pp. 10-17
-
-
Liu, J.H.1
Ban, Y.2
Wen, X.-P.3
Nakajima, I.4
Moriguchi, T.5
-
31
-
-
77953638304
-
Genome-wide and molecular evolution analyses of the phospholipase D gene family in Poplar and Grape
-
Liu Q., Zhang C., Yang Y., Hu X. Genome-wide and molecular evolution analyses of the phospholipase D gene family in Poplar and Grape. BMC Plant Biol. 2010, 10:117-131.
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 117-131
-
-
Liu, Q.1
Zhang, C.2
Yang, Y.3
Hu, X.4
-
32
-
-
33645509923
-
Evolution of Arabidopsis microRNA families through duplication events
-
Maher C., Stein L., Ware D. Evolution of Arabidopsis microRNA families through duplication events. Genome Res. 2006, 16:510-519.
-
(2006)
Genome Res.
, vol.16
, pp. 510-519
-
-
Maher, C.1
Stein, L.2
Ware, D.3
-
33
-
-
58149203237
-
CDD: specific functional annotation with the conserved domain database
-
Marchler-Bauer A., Anderson J.B., Chitsaz F., Derbyshire M.K., DeWeese-Scott C., Fong J.H., Geer L.Y., Geer R.C., Gonzales N.R., Gwadz M., He S., Hurwitz D.I., Jackson J.D., Ke Z., Lanczycki C.J., Liebert C.A., Liu C., Lu F., Lu S., Marchler G.H., Mullokandov M., Song J.S., Tasneem A., Thanki N., Yamashita R.A., Zhang D., Zhang N., Bryant S.H. CDD: specific functional annotation with the conserved domain database. Nucleic Acids Res. 2009, 37:D205-D210.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Chitsaz, F.3
Derbyshire, M.K.4
DeWeese-Scott, C.5
Fong, J.H.6
Geer, L.Y.7
Geer, R.C.8
Gonzales, N.R.9
Gwadz, M.10
He, S.11
Hurwitz, D.I.12
Jackson, J.D.13
Ke, Z.14
Lanczycki, C.J.15
Liebert, C.A.16
Liu, C.17
Lu, F.18
Lu, S.19
Marchler, G.H.20
Mullokandov, M.21
Song, J.S.22
Tasneem, A.23
Thanki, N.24
Yamashita, R.A.25
Zhang, D.26
Zhang, N.27
Bryant, S.H.28
more..
-
36
-
-
33645816525
-
A Bifurcating pathway directs abscisic acid effects on stomatal closure and opening in Arabidopsis
-
Mishra G., Zhang W., Deng F., Zhao J., Wang X. A Bifurcating pathway directs abscisic acid effects on stomatal closure and opening in Arabidopsis. Science 2006, 312:264-266.
-
(2006)
Science
, vol.312
, pp. 264-266
-
-
Mishra, G.1
Zhang, W.2
Deng, F.3
Zhao, J.4
Wang, X.5
-
37
-
-
0034067204
-
Hyperosmotic stress stimulates phospholipase D activity and elevates the levels of phosphatidic acid and diacylglycerol pyrophosphate
-
Munnik T., Meijer H.J., Ter Riet B., Hirt H., Frank W., Bartels D., Musgrave A. Hyperosmotic stress stimulates phospholipase D activity and elevates the levels of phosphatidic acid and diacylglycerol pyrophosphate. Plant J. 2000, 22:147-154.
-
(2000)
Plant J.
, vol.22
, pp. 147-154
-
-
Munnik, T.1
Meijer, H.J.2
Ter Riet, B.3
Hirt, H.4
Frank, W.5
Bartels, D.6
Musgrave, A.7
-
38
-
-
0031830448
-
Substrate selectivities and lipid modulation of plant phospholipase Dα, -β, and -γ
-
Pappan K., Austin-Brown S., Chapman K.D., Wang X. Substrate selectivities and lipid modulation of plant phospholipase Dα, -β, and -γ. Arch. Biochem. Biophys. 1998, 353:131-140.
-
(1998)
Arch. Biochem. Biophys.
, vol.353
, pp. 131-140
-
-
Pappan, K.1
Austin-Brown, S.2
Chapman, K.D.3
Wang, X.4
-
39
-
-
0031003039
-
Molecular cloning and functional analysis of polyphosphoinositide-dependent phospholipase D, PLDbeta, from Arabidopsis
-
Pappan K., Qin W., Dyer J.H., Zheng L., Wang X. Molecular cloning and functional analysis of polyphosphoinositide-dependent phospholipase D, PLDbeta, from Arabidopsis. J. Biol. Chem. 1997, 272:7055-7061.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 7055-7061
-
-
Pappan, K.1
Qin, W.2
Dyer, J.H.3
Zheng, L.4
Wang, X.5
-
40
-
-
0029921149
-
A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases: identification of duplicated repeats and potential active site residues
-
Ponting C.P., Kerr I.D. A novel family of phospholipase D homologues that includes phospholipid synthases and putative endonucleases: identification of duplicated repeats and potential active site residues. Protein Sci. 1996, 5:914-922.
-
(1996)
Protein Sci.
, vol.5
, pp. 914-922
-
-
Ponting, C.P.1
Kerr, I.D.2
-
41
-
-
0036006422
-
The Arabidopsis phospholipase D family. Characterization of a calcium-independent and phosphatidylcholine-selective PLDzeta1 with distinct regulatory domains
-
Qin C., Wang X. The Arabidopsis phospholipase D family. Characterization of a calcium-independent and phosphatidylcholine-selective PLDzeta1 with distinct regulatory domains. Plant Phys. 2002, 128:1057-1068.
-
(2002)
Plant Phys.
, vol.128
, pp. 1057-1068
-
-
Qin, C.1
Wang, X.2
-
42
-
-
77955505201
-
Dating and functional characterization of duplicated genes in the apple (Malus domestica Borkh.) by analyzing EST data
-
Sanzol J. Dating and functional characterization of duplicated genes in the apple (Malus domestica Borkh.) by analyzing EST data. BMC Plant Biol. 2010, 10:87-108.
-
(2010)
BMC Plant Biol.
, vol.10
, pp. 87-108
-
-
Sanzol, J.1
-
43
-
-
44949231424
-
Analyzing real-time PCR data by the comparative CT method
-
Schmittgen T.D., Livak K.J. Analyzing real-time PCR data by the comparative CT method. Nat. Protoc. 2008, 3:1101-1108.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1101-1108
-
-
Schmittgen, T.D.1
Livak, K.J.2
-
44
-
-
0033231049
-
Identification of a phosphoinositide binding motif that mediates activation of mammalian and yeast phospholipase D isoenzymes
-
Sciorra V.A., Rudge S.A., Prestwich G.D., Frohman M.A., Engebrecht J., Morris A.J. Identification of a phosphoinositide binding motif that mediates activation of mammalian and yeast phospholipase D isoenzymes. EMBO J. 1999, 18:5911-5921.
-
(1999)
EMBO J.
, vol.18
, pp. 5911-5921
-
-
Sciorra, V.A.1
Rudge, S.A.2
Prestwich, G.D.3
Frohman, M.A.4
Engebrecht, J.5
Morris, A.J.6
-
45
-
-
79251636555
-
The genome of woodland strawberry (Fragaria vesca)
-
Shulaev V., Sargent D.J., Crowhurst R.N., Mockler T.C., Folkerts O., Delcher A.L., Jaiswal P., Mockaitis K., Liston A., Mane S.P., Burns P., Davis T.M., Slovin J.P., Bassil N., Hellens R.P., Evans C., Harkins T., Kodira C., Desany B., Crasta O.R., Jensen R.V., Allan A.C., Michael T.P., Setubal J.C., Celton J.-M., Rees D.J.G., Williams K.P., Holt S.H., Rojas J.J.R., Chatterjee M., Liu B., Silva H., Meisel L., Adato A., Filichkin S.A., Troggio M., Viola R., Ashman T.-L., Wang H., Dharmawardhana P., Elser J., Raja R., Priest H.D., Bryant D.W., Fox S.E., Givan S.A., Wilhelm L.J., Naithani S., Christoffels A., Salama D.Y., Carter J., Girona E.L., Zdepski A., Wang W., Kerstetter R.A., Schwab W., Korban S.S., Davik J., Monfort A., Denoyes-Rothan B., Arus P., Mittler R., Flinn B., Aharoni A., Bennetzen J.L., Salzberg S.L., Dickerman A.W., Velasco R., Borodovsky M., Veilleux R.E., Folta K.M. The genome of woodland strawberry (Fragaria vesca). Nat. Genet. 2010, 43:109-151.
-
(2010)
Nat. Genet.
, vol.43
, pp. 109-151
-
-
Shulaev, V.1
Sargent, D.J.2
Crowhurst, R.N.3
Mockler, T.C.4
Folkerts, O.5
Delcher, A.L.6
Jaiswal, P.7
Mockaitis, K.8
Liston, A.9
Mane, S.P.10
Burns, P.11
Davis, T.M.12
Slovin, J.P.13
Bassil, N.14
Hellens, R.P.15
Evans, C.16
Harkins, T.17
Kodira, C.18
Desany, B.19
Crasta, O.R.20
Jensen, R.V.21
Allan, A.C.22
Michael, T.P.23
Setubal, J.C.24
Celton, J.-M.25
Rees, D.J.G.26
Williams, K.P.27
Holt, S.H.28
Rojas, J.J.R.29
Chatterjee, M.30
Liu, B.31
Silva, H.32
Meisel, L.33
Adato, A.34
Filichkin, S.A.35
Troggio, M.36
Viola, R.37
Ashman, T.-L.38
Wang, H.39
Dharmawardhana, P.40
Elser, J.41
Raja, R.42
Priest, H.D.43
Bryant, D.W.44
Fox, S.E.45
Givan, S.A.46
Wilhelm, L.J.47
Naithani, S.48
Christoffels, A.49
Salama, D.Y.50
Carter, J.51
Girona, E.L.52
Zdepski, A.53
Wang, W.54
Kerstetter, R.A.55
Schwab, W.56
Korban, S.S.57
Davik, J.58
Monfort, A.59
Denoyes-Rothan, B.60
Arus, P.61
Mittler, R.62
Flinn, B.63
Aharoni, A.64
Bennetzen, J.L.65
Salzberg, S.L.66
Dickerman, A.W.67
Velasco, R.68
Borodovsky, M.69
Veilleux, R.E.70
Folta, K.M.71
more..
-
46
-
-
84863798389
-
Comprehensive expression analysis of rice phospholipase D gene family during abiotic stresses and development
-
Singh A., Pandey A., Baranwal V., Kapoor S., Pandey G.K. Comprehensive expression analysis of rice phospholipase D gene family during abiotic stresses and development. Plant Signal. Behav. 2012, 7:847-855.
-
(2012)
Plant Signal. Behav.
, vol.7
, pp. 847-855
-
-
Singh, A.1
Pandey, A.2
Baranwal, V.3
Kapoor, S.4
Pandey, G.K.5
-
47
-
-
84862786214
-
Cloning and characterization of a cucumber phospholipase D gene in response to excess nitrate and other abiotic stresses
-
Song Y., Du D., Chu M., Li X., Xu H., Wang X., Wei M., Shi Q., Yang F. Cloning and characterization of a cucumber phospholipase D gene in response to excess nitrate and other abiotic stresses. Sci. Hortic. 2012, 135:128-136.
-
(2012)
Sci. Hortic.
, vol.135
, pp. 128-136
-
-
Song, Y.1
Du, D.2
Chu, M.3
Li, X.4
Xu, H.5
Wang, X.6
Wei, M.7
Shi, Q.8
Yang, F.9
-
50
-
-
33747847779
-
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
-
Suyama M., Torrents D., Bork P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 2006, 34:W609-W612.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Suyama, M.1
Torrents, D.2
Bork, P.3
-
51
-
-
38549144806
-
The Arabidopsis Information Resource (TAIR): gene structure and function annotation
-
Swarbreck D., Wilks C., Lamesch P., Berardini T.Z., Garcia-Hernandez M., Foerster H., Li D., Meyer T., Muller R., Ploetz L., Radenbaugh A., Singh S., Swing V., Tissier C., Zhang P., Huala E. The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res. 2008, 36:D1009-D1014.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Swarbreck, D.1
Wilks, C.2
Lamesch, P.3
Berardini, T.Z.4
Garcia-Hernandez, M.5
Foerster, H.6
Li, D.7
Meyer, T.8
Muller, R.9
Ploetz, L.10
Radenbaugh, A.11
Singh, S.12
Swing, V.13
Tissier, C.14
Zhang, P.15
Huala, E.16
-
52
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
53
-
-
42549120705
-
Synteny and collinearity in plant genomes
-
Tang H., Bowers J.E., Wang X., Ming R., Alam M., Paterson A.H. Synteny and collinearity in plant genomes. Science 2008, 320:486-488.
-
(2008)
Science
, vol.320
, pp. 486-488
-
-
Tang, H.1
Bowers, J.E.2
Wang, X.3
Ming, R.4
Alam, M.5
Paterson, A.H.6
-
54
-
-
57149102681
-
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
-
Tang H., Wang X., Bowers J.E., Ming R., Alam M., Paterson A.H. Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. Genome Res. 2008, 18:1944-1954.
-
(2008)
Genome Res.
, vol.18
, pp. 1944-1954
-
-
Tang, H.1
Wang, X.2
Bowers, J.E.3
Ming, R.4
Alam, M.5
Paterson, A.H.6
-
55
-
-
78650290748
-
Cloning, expression and functional characterization of the C2 domain from tomato phospholipase D alpha
-
Tiwari K., Paliyath G. Cloning, expression and functional characterization of the C2 domain from tomato phospholipase D alpha. Plant Physiol. Biochem. 2011, 49:18-32.
-
(2011)
Plant Physiol. Biochem.
, vol.49
, pp. 18-32
-
-
Tiwari, K.1
Paliyath, G.2
-
56
-
-
0029328475
-
Purification and characterization of phospholipase D (PLD) from rice (Oryza sativa L.) and cloning of cDNA for PLD from rice and maize (Zea mays L.)
-
Ueki J., Morioka S., Komari T., Kumashiro T. Purification and characterization of phospholipase D (PLD) from rice (Oryza sativa L.) and cloning of cDNA for PLD from rice and maize (Zea mays L.). Plant Cell Physiol. 1995, 36:903-914.
-
(1995)
Plant Cell Physiol.
, vol.36
, pp. 903-914
-
-
Ueki, J.1
Morioka, S.2
Komari, T.3
Kumashiro, T.4
-
57
-
-
77957560949
-
The genome of the domesticated apple (Malus×domestica Borkh.)
-
Velasco R., Zharkikh A., Affourtit J., Dhingra A., Cestaro A., Kalyanaraman A., Fontana P., Bhatnagar S.K., Troggio M., Pruss D., Salvi S., Pindo M., Baldi P., Castelletti S., Cavaiuolo M., Coppola G., Costa F., Cova V., Dal Ri A., Goremykin V., Komjanc M., Longhi S., Magnago P., Malacarne G., Malnoy M., Micheletti D., Moretto M., Perazzolli M., Si-Ammour A., Vezzulli S., Zini E., Eldredge G., Fitzgerald L.M., Gutin N., Lanchbury J., Macalma T., Mitchell J.T., Reid J., Wardell B., Kodira C., Chen Z., Desany B., Niazi F., Palmer M., Koepke T., Jiwan D., Schaeffer S., Krishnan V., Wu C., Chu V.T., King S.T., Vick J., Tao Q., Mraz A., Stormo A., Stormo K., Bogden R., Ederle D., Stella A., Vecchietti A., Kater M.M., Masiero S., Lasserre P., Lespinasse Y., Allan A.C., Bus V., Chagne D., Crowhurst R.N., Gleave A.P., Lavezzo E., Fawcett J.A., Proost S., Rouze P., Sterck L., Toppo S., Lazzari B., Hellens R.P., Durel C.-E., Gutin A., Bumgarner R.E., Gardiner S.E., Skolnick M., Egholm M., Van de Peer Y., Salamini F., Viola R. The genome of the domesticated apple (Malus×domestica Borkh.). Nat. Genet. 2010, 42:833-839.
-
(2010)
Nat. Genet.
, vol.42
, pp. 833-839
-
-
Velasco, R.1
Zharkikh, A.2
Affourtit, J.3
Dhingra, A.4
Cestaro, A.5
Kalyanaraman, A.6
Fontana, P.7
Bhatnagar, S.K.8
Troggio, M.9
Pruss, D.10
Salvi, S.11
Pindo, M.12
Baldi, P.13
Castelletti, S.14
Cavaiuolo, M.15
Coppola, G.16
Costa, F.17
Cova, V.18
Dal Ri, A.19
Goremykin, V.20
Komjanc, M.21
Longhi, S.22
Magnago, P.23
Malacarne, G.24
Malnoy, M.25
Micheletti, D.26
Moretto, M.27
Perazzolli, M.28
Si-Ammour, A.29
Vezzulli, S.30
Zini, E.31
Eldredge, G.32
Fitzgerald, L.M.33
Gutin, N.34
Lanchbury, J.35
Macalma, T.36
Mitchell, J.T.37
Reid, J.38
Wardell, B.39
Kodira, C.40
Chen, Z.41
Desany, B.42
Niazi, F.43
Palmer, M.44
Koepke, T.45
Jiwan, D.46
Schaeffer, S.47
Krishnan, V.48
Wu, C.49
Chu, V.T.50
King, S.T.51
Vick, J.52
Tao, Q.53
Mraz, A.54
Stormo, A.55
Stormo, K.56
Bogden, R.57
Ederle, D.58
Stella, A.59
Vecchietti, A.60
Kater, M.M.61
Masiero, S.62
Lasserre, P.63
Lespinasse, Y.64
Allan, A.C.65
Bus, V.66
Chagne, D.67
Crowhurst, R.N.68
Gleave, A.P.69
Lavezzo, E.70
Fawcett, J.A.71
Proost, S.72
Rouze, P.73
Sterck, L.74
Toppo, S.75
Lazzari, B.76
Hellens, R.P.77
Durel, C.-E.78
Gutin, A.79
Bumgarner, R.E.80
Gardiner, S.E.81
Skolnick, M.82
Egholm, M.83
Van de Peer, Y.84
Salamini, F.85
Viola, R.86
more..
-
58
-
-
70449638279
-
In silico cloning and sequence analysis of phospholipase D alpha gene from peach fruit
-
Wan S.-b., Zhang B., Zhan J.-c., Chen J.-y., Yin J.-y. In silico cloning and sequence analysis of phospholipase D alpha gene from peach fruit. Agr. Sci. China 2009, 8:1293-1300.
-
(2009)
Agr. Sci. China
, vol.8
, pp. 1293-1300
-
-
Wan, S.-B.1
Zhang, B.2
Zhan, J.-C.3
Chen, J.-Y.4
Yin, J.-Y.5
-
59
-
-
0027983786
-
Cloning and expression of phosphatidylcholine-hydrolyzing phospholipase D from Ricinus communis L
-
Wang X., Xu L., Zheng L. Cloning and expression of phosphatidylcholine-hydrolyzing phospholipase D from Ricinus communis L. J. Biol. Chem. 1994, 269:20312-20317.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 20312-20317
-
-
Wang, X.1
Xu, L.2
Zheng, L.3
-
60
-
-
0037199955
-
Profiling membrane lipids in plant stress responses. Role of phospholipase D alpha in freezing-induced lipid changes in Arabidopsis
-
Welti R., Li W., Li M., Sang Y., Biesiada H., Zhou H.-E., Rajashekar C.B., Williams T.D., Wang X. Profiling membrane lipids in plant stress responses. Role of phospholipase D alpha in freezing-induced lipid changes in Arabidopsis. J. Biol. Chem. 2002, 277:31994-32002.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 31994-32002
-
-
Welti, R.1
Li, W.2
Li, M.3
Sang, Y.4
Biesiada, H.5
Zhou, H.-E.6
Rajashekar, C.B.7
Williams, T.D.8
Wang, X.9
-
61
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 2007, 24:1586-1591.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
62
-
-
22244438277
-
Characterization of microsomal and mitochondrial phospholipase D activities and cloning of a phospholipase D alpha cDNA from strawberry fruits
-
Yuan H.Y., Chen L.G., Paliyath G., Sullivan A., Murr D.P. Characterization of microsomal and mitochondrial phospholipase D activities and cloning of a phospholipase D alpha cDNA from strawberry fruits. Plant Physiol. Biochem. 2005, 43:535-547.
-
(2005)
Plant Physiol. Biochem.
, vol.43
, pp. 535-547
-
-
Yuan, H.Y.1
Chen, L.G.2
Paliyath, G.3
Sullivan, A.4
Murr, D.P.5
-
63
-
-
0142124100
-
2-induced cell death in arabidopsis
-
2-induced cell death in arabidopsis. Plant Cell 2003, 15:2285-2295.
-
(2003)
Plant Cell
, vol.15
, pp. 2285-2295
-
-
Zhang, W.H.1
Wang, C.X.2
Qin, C.B.3
Wood, T.4
Olafsdottir, G.5
Welti, R.6
Wang, X.M.7
-
64
-
-
0346457183
-
Arabidopsis phospholipase D alpha 1 interacts with the heterotrimeric G-protein alpha-subunit through a motif analogous to the DRY motif in G-protein-coupled receptors
-
Zhao J., Wang X.M. Arabidopsis phospholipase D alpha 1 interacts with the heterotrimeric G-protein alpha-subunit through a motif analogous to the DRY motif in G-protein-coupled receptors. J. Biol. Chem. 2004, 279:1794-1800.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 1794-1800
-
-
Zhao, J.1
Wang, X.M.2
-
65
-
-
84862886057
-
Genomic analysis of phospholipase D family and characterization of GmPLD alpha s in soybean (Glycine max)
-
Zhao J., Zhou D., Zhang Q., Zhang W. Genomic analysis of phospholipase D family and characterization of GmPLD alpha s in soybean (Glycine max). J. Plant Res. 2012, 125:569-578.
-
(2012)
J. Plant Res.
, vol.125
, pp. 569-578
-
-
Zhao, J.1
Zhou, D.2
Zhang, Q.3
Zhang, W.4
|