메뉴 건너뛰기




Volumn 46, Issue 4, 2015, Pages 361-370

Searching new signals for production traits through gene-based association analysis in three Italian cattle breeds

Author keywords

dairy cattle; genewise; GWAS

Indexed keywords

BOS;

EID: 84937968915     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/age.12303     Document Type: Article
Times cited : (21)

References (56)
  • 1
    • 80052493684 scopus 로고    scopus 로고
    • A network-based approach to prioritize results from genome-wide association studies
    • Akula N.; Baranova A.; Seto D.; et al,. (2011) A network-based approach to prioritize results from genome-wide association studies. PLoS One 6, e24220.
    • (2011) PLoS One , vol.6 , pp. e24220
    • Akula, N.1    Baranova, A.2    Seto, D.3
  • 2
    • 44249112333 scopus 로고    scopus 로고
    • A genomic background based method for association analysis in related individuals
    • Amin N.; van Duijn C.M.; &, Aulchenko Y.S.; (2007) A genomic background based method for association analysis in related individuals. PLoS One 2, e1274.
    • (2007) PLoS One , vol.2 , pp. e1274
    • Amin, N.1    Van Duijn, C.M.2    Aulchenko, Y.S.3
  • 3
    • 35048838105 scopus 로고    scopus 로고
    • Genomewide rapid association using mixed model and regression: A fast and simple method for genomewide pedigree-based quantitative trait loci association analysis
    • Aulchenko Y.S.; de Koning D.-J.; &, Haley C.; (2007) Genomewide rapid association using mixed model and regression: a fast and simple method for genomewide pedigree-based quantitative trait loci association analysis. Genetics 177, 577-85.
    • (2007) Genetics , vol.177 , pp. 577-585
    • Aulchenko, Y.S.1    De Koning, D.-J.2    Haley, C.3
  • 5
    • 0037274657 scopus 로고    scopus 로고
    • Molecular dissection of a quantitative trait locus: A phenylalanine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition
    • Blott S.; Kim J.-J.; Moisio S.; et al,. (2003) Molecular dissection of a quantitative trait locus: a phenylalanine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition. Genetics 163, 253-66.
    • (2003) Genetics , vol.163 , pp. 253-266
    • Blott, S.1    Kim, J.-J.2    Moisio, S.3
  • 6
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14 000 cases of seven common diseases and 3000 shared controls
    • Burton P.R.; Clayton D.G.; Cardon L.R.; et al,. (2007) Genome-wide association study of 14 000 cases of seven common diseases and 3000 shared controls. Nature 447, 661-78.
    • (2007) Nature , vol.447 , pp. 661-678
    • Burton, P.R.1    Clayton, D.G.2    Cardon, L.R.3
  • 7
    • 73149103718 scopus 로고    scopus 로고
    • Prioritizing GWAS results: A review of statistical methods and recommendations for their application
    • Cantor R.M.; Lange K.; &, Sinsheimer J.S.; (2010) Prioritizing GWAS results: a review of statistical methods and recommendations for their application. American Journal of Human Genetics 86, 6-22.
    • (2010) American Journal of Human Genetics , vol.86 , pp. 6-22
    • Cantor, R.M.1    Lange, K.2    Sinsheimer, J.S.3
  • 9
    • 22244468049 scopus 로고    scopus 로고
    • Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein cattle
    • Cohen-Zinder M.; Seroussi E.; Larkin D.M.; Loor J.J.; Wind A.E.; der Lee J.-H.Drackley.J.K.; Band M.R.; Hernandez A.G.; Shani M.; et al,. (2005) Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein cattle. Genome Research 15, 936-44.
    • (2005) Genome Research , vol.15 , pp. 936-944
    • Cohen-Zinder, M.1    Seroussi, E.2    Larkin, D.M.3    Loor, J.J.4    Wind, A.E.5    Der Lee J.-H.Drackley, J.K.6    Band, M.R.7    Hernandez, A.G.8    Shani, M.9
  • 10
    • 81155157965 scopus 로고    scopus 로고
    • Genome-wide association analysis of thirty-one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows
    • Cole J.B.; Wiggans G.R.; Ma L.; et al,. (2011) Genome-wide association analysis of thirty-one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows. BMC Genomics 12, 408.
    • (2011) BMC Genomics , vol.12 , pp. 408
    • Cole, J.B.1    Wiggans, G.R.2    Ma, L.3
  • 11
    • 1642290221 scopus 로고    scopus 로고
    • Functional expression of bcl-2 protein family and AIF in bovine mammary tissue in early lactation
    • Colitti M.; Wilde C.J.; &, Stefanon B.; (2004) Functional expression of bcl-2 protein family and AIF in bovine mammary tissue in early lactation. Journal of Dairy Research 71, 20-7.
    • (2004) Journal of Dairy Research , vol.71 , pp. 20-27
    • Colitti, M.1    Wilde, C.J.2    Stefanon, B.3
  • 12
    • 42249087793 scopus 로고    scopus 로고
    • Estimation of significance thresholds for genomewide association scans
    • Dudbridge F.; &, Gusnanto A.; (2008) Estimation of significance thresholds for genomewide association scans. Genetic Epidemiology 32, 227-34.
    • (2008) Genetic Epidemiology , vol.32 , pp. 227-234
    • Dudbridge, F.1    Gusnanto, A.2
  • 13
    • 77951621301 scopus 로고    scopus 로고
    • The genome sequence of taurine cattle: A window to ruminant biology and evolution
    • Elsik C.G.; Tellam R.L.; &, Worley K.C.; (2009) The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science 324, 522-8.
    • (2009) Science , vol.324 , pp. 522-528
    • Elsik, C.G.1    Tellam, R.L.2    Worley, K.C.3
  • 14
    • 0027179703 scopus 로고
    • Eps8, a substrate for the epidermal growth factor receptor kinase, enhances EGF-dependent mitogenic signals
    • Fazioli F.; Minichiello L.; Matoska V.; Castagnino P.; Miki T.; Wong W.T.; &, Di Fiore P.P.; (1993) Eps8, a substrate for the epidermal growth factor receptor kinase, enhances EGF-dependent mitogenic signals. EMBO Journal 12, 3799-808.
    • (1993) EMBO Journal , vol.12 , pp. 3799-3808
    • Fazioli, F.1    Minichiello, L.2    Matoska, V.3    Castagnino, P.4    Miki, T.5    Wong, W.T.6    Di Fiore, P.P.7
  • 18
    • 84878353560 scopus 로고    scopus 로고
    • Contribution of an additive locus to genetic variance when inheritance is multi-factorial with implications on interpretation of GWAS
    • Gianola D.; Hospital F.; &, Verrier E.; (2013) Contribution of an additive locus to genetic variance when inheritance is multi-factorial with implications on interpretation of GWAS. Theoretical and Applied Genetics. 126, 1457-72.
    • (2013) Theoretical and Applied Genetics. , vol.126 , pp. 1457-1472
    • Gianola, D.1    Hospital, F.2    Verrier, E.3
  • 19
    • 84878064597 scopus 로고    scopus 로고
    • P190B RhoGAP overexpression in the developing mammary epithelium induces TGFβ-dependent fibroblast activation
    • Gillette M.; Bray K.; Blumenthaler A.; &, Vargo-Gogola T.; (2013) P190B RhoGAP overexpression in the developing mammary epithelium induces TGFβ-dependent fibroblast activation. PLoS One 8, e65105.
    • (2013) PLoS One , vol.8 , pp. e65105
    • Gillette, M.1    Bray, K.2    Blumenthaler, A.3    Vargo-Gogola, T.4
  • 20
    • 0036175484 scopus 로고    scopus 로고
    • Positional candidate cloning of a QTL in dairy cattle: Identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition
    • Grisart B.; Coppieters W.; Farnir F.; et al,. (2002) Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Research 12, 222-31.
    • (2002) Genome Research , vol.12 , pp. 222-231
    • Grisart, B.1    Coppieters, W.2    Farnir, F.3
  • 21
    • 10744231897 scopus 로고    scopus 로고
    • Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition
    • Grisart B.; Farnir F.; Karim L.; et al,. (2004) Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition. Proceedings of the National Academy of Sciences of the United States of America 101, 2398-403.
    • (2004) Proceedings of the National Academy of Sciences of the United States of America , vol.101 , pp. 2398-2403
    • Grisart, B.1    Farnir, F.2    Karim, L.3
  • 23
    • 84876554236 scopus 로고    scopus 로고
    • Animal QTLdb: An improved database tool for livestock animal QTL/association data dissemination in the post-genome era
    • Hu Z.-L.; Park C.A.; Wu X.-L.; &, Reecy J.M.; (2013) Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era. Nucleic Acids Research 41, D871-9.
    • (2013) Nucleic Acids Research , vol.41 , pp. D871-D879
    • Hu, Z.-L.1    Park, C.A.2    Wu, X.-L.3    Reecy, J.M.4
  • 24
    • 57749113609 scopus 로고    scopus 로고
    • Proto-oncogene FBI-1 (Pokemon/ZBTB7A) represses transcription of the tumor suppressor Rb Gene via binding competition with Sp1 and recruitment of co-repressors
    • Jeon B.-N.; Yoo J.-Y.; Choi W.-I.; Lee C.-E.; Yoon H.-G.; &, Hur M.-W.; (2008) Proto-oncogene FBI-1 (Pokemon/ZBTB7A) represses transcription of the tumor suppressor Rb Gene via binding competition with Sp1 and recruitment of co-repressors. Journal of Biological Chemistry 283, 33199-210.
    • (2008) Journal of Biological Chemistry , vol.283 , pp. 33199-33210
    • Jeon, B.-N.1    Yoo, J.-Y.2    Choi, W.-I.3    Lee, C.-E.4    Yoon, H.-G.5    Hur, M.-W.6
  • 25
    • 78149436393 scopus 로고    scopus 로고
    • Genome wide association studies for milk production traits in Chinese Holstein population
    • Jiang L.; Liu J.; Sun D.; Ma P.; Ding X.; Yu Y.; &, Zhang Q.; (2010) Genome wide association studies for milk production traits in Chinese Holstein population. PLoS One 5, e13661.
    • (2010) PLoS One , vol.5 , pp. e13661
    • Jiang, L.1    Liu, J.2    Sun, D.3    Ma, P.4    Ding, X.5    Yu, Y.6    Zhang, Q.7
  • 26
    • 84876443811 scopus 로고    scopus 로고
    • Decreased FOXF2 mRNA expression indicates early-onset metastasis and poor prognosis for breast cancer patients with histological grade II tumor
    • Kong P.-Z.; Yang F.; Li L.; Li X.-Q.; &, Feng Y.-M.; (2013) Decreased FOXF2 mRNA expression indicates early-onset metastasis and poor prognosis for breast cancer patients with histological grade II tumor. PLoS One 8, e61591.
    • (2013) PLoS One , vol.8 , pp. e61591
    • Kong, P.-Z.1    Yang, F.2    Li, L.3    Li, X.-Q.4    Feng, Y.-M.5
  • 27
    • 84859709154 scopus 로고    scopus 로고
    • POK/ZBTB proteins: An emerging family of proteins that regulate lymphoid development and function
    • Lee S.-U.; &, Maeda T.; (2012) POK/ZBTB proteins: an emerging family of proteins that regulate lymphoid development and function. Immunological Reviews 247, 107-19.
    • (2012) Immunological Reviews , vol.247 , pp. 107-119
    • Lee, S.-U.1    Maeda, T.2
  • 30
    • 33745728170 scopus 로고    scopus 로고
    • Hedgehog signaling and bmi-1 regulate self-renewal of normal and malignant human mammary stem cells
    • Liu S.; Dontu G.; Mantle I.D.; Patel S.; Ahn N.; Jackson K.W.; Suri P.; &, Wicha M.S.; (2006) Hedgehog signaling and bmi-1 regulate self-renewal of normal and malignant human mammary stem cells. Cancer Research 66, 6063-71.
    • (2006) Cancer Research , vol.66 , pp. 6063-6071
    • Liu, S.1    Dontu, G.2    Mantle, I.D.3    Patel, S.4    Ahn, N.5    Jackson, K.W.6    Suri, P.7    Wicha, M.S.8
  • 31
    • 84903784187 scopus 로고    scopus 로고
    • The thioredoxin superfamily in oxidative protein folding
    • Lu J.; &, Holmgren A.; (2014) The thioredoxin superfamily in oxidative protein folding. Antioxidants & Redox Signaling, 21, 457-70. doi: 10.1089/ars.2014.5849.
    • (2014) Antioxidants & Redox Signaling , vol.21 , pp. 457-470
    • Lu, J.1    Holmgren, A.2
  • 32
    • 34147108263 scopus 로고    scopus 로고
    • Snp. Plotter: An r -based SNP/haplotype association and linkage disequilibrium plotting package
    • Luna A.; &, Nicodemus K.K.; (2007) snp. plotter: an r -based SNP/haplotype association and linkage disequilibrium plotting package. Bioinformatics 23, 774-6.
    • (2007) Bioinformatics , vol.23 , pp. 774-776
    • Luna, A.1    Nicodemus, K.K.2
  • 34
    • 84865860932 scopus 로고    scopus 로고
    • Association of the polymorphism g.8514C>T in the osteopontin gene (SPP1) with milk yield in the dairy cattle breed Girolando
    • De Mello F.; Cobuci J.A.; Martins M.F.; Silva M.V.G.B.; &, Neto J.B.; (2012) Association of the polymorphism g.8514C>T in the osteopontin gene (SPP1) with milk yield in the dairy cattle breed Girolando. Animal Genetics 43, 647-8.
    • (2012) Animal Genetics , vol.43 , pp. 647-648
    • De Mello, F.1    Cobuci, J.A.2    Martins, M.F.3    Silva, M.V.G.B.4    Neto, J.B.5
  • 35
  • 38
    • 34548292504 scopus 로고    scopus 로고
    • Plink: A tool set for whole-genome association and population-based linkage analyses
    • Purcell S.; Neale B.; Todd-Brown K.; et al,. (2007) plink: a tool set for whole-genome association and population-based linkage analyses. American Journal of Human Genetics 81, 559-75.
    • (2007) American Journal of Human Genetics , vol.81 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3
  • 39
    • 84888013697 scopus 로고    scopus 로고
    • Antibacterial properties of recombinant human non-pancreatic secretory phospholipase A2
    • Qiu S.; &, Lai L.; (2013) Antibacterial properties of recombinant human non-pancreatic secretory phospholipase A2. Biochemical and Biophysical Research Communications 441, 453-6.
    • (2013) Biochemical and Biophysical Research Communications , vol.441 , pp. 453-456
    • Qiu, S.1    Lai, L.2
  • 40
    • 77951770756 scopus 로고    scopus 로고
    • Bedtools: A flexible suite of utilities for comparing genomic features
    • Quinlan A.R.; &, Hall I.M.; (2010) bedtools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-2.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 43
    • 84863304598 scopus 로고    scopus 로고
    • R Core Team. Vienna, Austria: R Foundation for Statistical Computing Available at
    • R Core Team (2014). r: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing Available at: http://www.R-project.org/.
    • (2014) R: A Language and Environment for Statistical Computing
  • 46
    • 78650831721 scopus 로고    scopus 로고
    • Beyond effector caspase inhibition: Bcl2L12 neutralizes p53 signaling in glioblastoma
    • Stegh A.H.; &, DePinho R.A.; (2011) Beyond effector caspase inhibition: Bcl2L12 neutralizes p53 signaling in glioblastoma. Cell Cycle 10, 33-8.
    • (2011) Cell Cycle , vol.10 , pp. 33-38
    • Stegh, A.H.1    DePinho, R.A.2
  • 49
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • The ENCODE Project Consortium
    • The ENCODE Project Consortium (2012) An integrated encyclopedia of DNA elements in the human genome. Nature 489, 57-74.
    • (2012) Nature , vol.489 , pp. 57-74
  • 50
    • 33845631216 scopus 로고    scopus 로고
    • Prognostic value of the apoptosis related genes BCL2 and BCL2L12 in breast cancer
    • Thomadaki H.; Talieri M.; &, Scorilas A.; (2007) Prognostic value of the apoptosis related genes BCL2 and BCL2L12 in breast cancer. Cancer Letters 247, 48-55.
    • (2007) Cancer Letters , vol.247 , pp. 48-55
    • Thomadaki, H.1    Talieri, M.2    Scorilas, A.3
  • 52
    • 77955254161 scopus 로고    scopus 로고
    • The emerging role of VHS domain-containing Tom1, Tom1L1 and Tom1L2 in membrane trafficking
    • Wang T.; Liu N.S.; Seet L.-F.; &, Hong W.; (2010) The emerging role of VHS domain-containing Tom1, Tom1L1 and Tom1L2 in membrane trafficking. Traffic 11, 1119-28.
    • (2010) Traffic , vol.11 , pp. 1119-1128
    • Wang, T.1    Liu, N.S.2    Seet, L.-F.3    Hong, W.4
  • 53
    • 84863811524 scopus 로고    scopus 로고
    • Identification and dissection of four major QTL affecting milk fat content in the German Holstein-Friesian population
    • Wang X.; Wurmser C.; Pausch H.; Jung S.; Reinhardt F.; Tetens J.; Thaller G.; &, Fries R.; (2012) Identification and dissection of four major QTL affecting milk fat content in the German Holstein-Friesian population. PLoS One 7, e40711.
    • (2012) PLoS One , vol.7 , pp. e40711
    • Wang, X.1    Wurmser, C.2    Pausch, H.3    Jung, S.4    Reinhardt, F.5    Tetens, J.6    Thaller, G.7    Fries, R.8
  • 54
    • 0347361672 scopus 로고    scopus 로고
    • Theoretical basis of the Beavis effect
    • Xu S.; (2003) Theoretical basis of the Beavis effect. Genetics 165, 2259-68.
    • (2003) Genetics , vol.165 , pp. 2259-2268
    • Xu, S.1
  • 55
    • 65149096757 scopus 로고    scopus 로고
    • A whole-genome assembly of the domestic cow, Bos taurus
    • Zimin A.V.; Delcher A.L.; Florea L.; et al,. (2009) A whole-genome assembly of the domestic cow, Bos taurus. Genome Biology 10, R42.
    • (2009) Genome Biology , vol.10 , pp. R42
    • Zimin, A.V.1    Delcher, A.L.2    Florea, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.