Genes of the RNASE5 pathway contain SNP associated with milk production traits in dairy cattle

Genetics Selection Evolution

Volumn 45, Issue 1, 2013, Pages

  Raven, Lesley Ann ^a,b,c   Cocks, Benjamin G ^a,b,c   Pryce, Jennie E ^a,c   Cottrell, Jeremy J ^a   Hayes, Ben J ^a,b,c  

^a DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

^b LA TROBE UNIVERSITY   (Australia)

^c Department of Civil and Environmental Engineering   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

CATTLE; DAIRY FARMING; ECONOMIC ACTIVITY; GENE EXPRESSION; GENETIC VARIATION; LACTATION; MILK PRODUCTION; MUTATION; PROTEIN; RNA;

BOS; BOVINAE;

MILK PROTEIN; PANCREATIC RIBONUCLEASE;

ANIMAL; ARTICLE; CATTLE; CHEMISTRY; CHROMOSOME MAP; FEMALE; FERTILITY; GENETIC ASSOCIATION; GENETICS; GENOME; METABOLISM; MILK; MULTIGENE FAMILY; QUANTITATIVE TRAIT; SIGNAL TRANSDUCTION; SINGLE NUCLEOTIDE POLYMORPHISM;

ANIMALS; CATTLE; CHROMOSOME MAPPING; FEMALE; FERTILITY; GENETIC ASSOCIATION STUDIES; GENOME; MILK; MILK PROTEINS; MULTIGENE FAMILY; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT, HERITABLE; RIBONUCLEASE, PANCREATIC; SIGNAL TRANSDUCTION;

EID: 84880114571     PISSN: 0999193X     EISSN: 12979686     Source Type: Journal    
DOI: 10.1186/1297-9686-45-25     Document Type: Article

References (53)

1. Biosynthesis and secretion of milk proteins: a review. Larson BL, J Dairy Res 1979 46 161 174 10.1017/S002202990001699X 381339
2. Genotype by environment interaction for fertility, survival, and milk production traits in Australian dairy cattle. Haile-Mariam M, Carrick MJ, Goddard ME, J Dairy Sci 2008 91 4840 4853 10.3168/jds.2008-1084 19038960 (Pubitemid 352847775)
3. Genome wide association studies for milk production traits in chinese holstein population. Jiang L, Liu J, Sun D, Ma P, Ding X, Yu Y, Zhang Q, PLoS One 2010 5 13661 10.1371/journal.pone.0013661 21048968
4. A validated genome-wide association study in 2 dairy cattle breeds for milk production and fertility traits using variable length haplotypes. Pryce JE, Bolormaa S, Chamberlain AJ, Bowman PJ, Savin K, Goddard ME, Hayes BJ, J Dairy Sci 2010 93 3331 3345 10.3168/jds.2009-2893 20630249
5. Genetic architecture of complex traits and accuracy of genomic prediction: coat colour, milk-fat percentage, and type in Holstein cattle as contrasting model traits. Hayes BJ, Pryce J, Chamberlain AJ, Bowman PJ, Goddard ME, PLoS Genet 2010 6 1001139 10.1371/journal.pgen.1001139 20927186
6. Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows. Cole J, Wiggans G, Ma L, Sonstegard T, Lawlor T, Crooker B, Van Tassell C, Yang J, Wang S, Matukumalli L, Da Y, BMC Genomics 2011 12 408 10.1186/1471-2164-12- 408 21831322
7. Distribution and location of genetic effects for dairy traits. Cole JB, VanRaden PM, O'Connell JR, Van Tassell CP, Sonstegard TS, Schnabel RD, Taylor JF, Wiggans GR, J Dairy Sci 2009 92 2931 2946 10.3168/jds.2008-1762 19448026
8. Polymorphic regions affecting human height also control stature in cattle. Pryce JE, Hayes BJ, Bolormaa S, Goddard ME, Genetics 2011 187 981 984 10.1534/genetics.110.123943 21212230
9. The effects of milk protein polymorphisms on milk components and cheese-producing ability. Aleandri R, Buttazzoni LG, Schneider JC, Caroli A, Davoli R, J Dairy Sci 1990 73 241 255 10.3168/jds.S0022-0302(90)78667-5
10. The ribonuclease A superfamily of mammals and birds: identifying new members and tracing evolutionary histories. Cho S, Beintema JJ, Zhang J, Genomics 2005 85 208 220 10.1016/j.ygeno.2004.10.008 15676279 (Pubitemid 40164786)
11. Isolation and characterization of angiogenin, an angiogenic protein from human carcinoma cells. Fett JW, Strydom DJ, Lobb RR, Alderman EM, Bethune JL, Riordan JF, Vallee BL, Biochemistry 1985 24 5480 5486 10.1021/bi00341a030 4074709 (Pubitemid 16228828)
12. Tumor angiogenesis: therapeutic implications. Folkman J, New Engl J Med 1971 285 1182 1186 10.1056/NEJM197111182852108 4938153
13. Endogenous angiogenin in endothelial cells is a general requirement for cell proliferation and angiogenesis. Kishimoto K, Liu S, Tsuji T, Olson KA, Hu GF, Oncogene 2005 24 445 456 10.1038/sj.onc.1208223 15558023 (Pubitemid 40188592)
14. Angiogenin-stimulated rRNA transcription is essential for initiation and survival of AKT-induced prostate intraepithelial neoplasia. Ibaragi S, Yoshioka N, Kishikawa H, Hu JK, Sadow PM, Li M, Hu GF, Molec Cancer Res 2009 7 415 424 10.1158/1541-7786.MCR-08-0137
15. Detection, quantitation, and localization of bovine angiogenin by immunological assays. Chang SI, Jeong GB, Park SH, Ahn BC, Choi JD, Chae Q, Namgoong SK, Chung SI, Biochem Biophys Res Commun 1997 232 323 327 10.1006/bbrc.1997.6280 9125173 (Pubitemid 27216211)
16. Characterisation of the anti-microbial activity of bovine milk ribonuclease4 and ribonuclease5 (angiogenin). Harris P, Johannessen KM, Smolenski G, Callaghan M, Broadhurst MK, Kim K, Wheeler TT, Int Dairy J 2010 20 400 407 10.1016/j.idairyj.2009.12.018
17. Mapping, phylogenetic and expression analysis of the RNase (RNaseA) locus in cattle. Wheeler TT, Maqbool NJ, Gupta SK, J Mol Evol 2012 74 237 248 10.1007/s00239-012-9502-7 22562705
18. Actin is a binding protein for angiogenin. Hu GF, Strydom DJ, Fett JW, Riordan JF, Vallee BL, Proc Nat Acad Sci USA 1993 90 1217 1221 10.1073/pnas.90.4.1217 7679494 (Pubitemid 23058142)
19. A putative angiogenin receptor in angiogenin-responsive human endothelial cells. Hu GF, Riordan JF, Vallee BL, Proc Nat Acad Sci USA 1997 94 2204 2209 10.1073/pnas.94.6.2204 9122172 (Pubitemid 27136852)
20. Nuclear translocation of angiogenin in proliferating endothelial cells is essential to its angiogenic activity. Moroianu J, Riordan JF, Proc Nat Acad Sci USA 1994 91 1677 1681 10.1073/pnas.91.5.1677 8127865 (Pubitemid 24080268)
21. Functional microarray analysis of mammary organogenesis reveals a developmental role in adaptive thermogenesis. Master SR, Hartman JL, D'Cruz CM, Moody SE, Keiper EA, Ha SI, Cox JD, Belka GK, Chodosh LA, Mol Endocrinol 2002 16 1185 1203 10.1210/me.16.6.1185 12040007 (Pubitemid 34621068)
22. NCBI National Centre for Biotechnology Information http://www.ncbi.nlm. nih.gov/
23. Basic local alignment search tool. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, J Molec Biol 1990 215 403 410 2231712
24. Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Gibbs RA, Taylor JF, Van Tassell CP, Barendse W, Eversole KA, Gill CA, Green RD, Hamernik DL, Kappes SM, Lien S, Matukumalli LK, McEwan JC, Nazareth LV, Schnabel RD, Weinstock GM, Wheeler DA, Ajmone-Marsan P, Boettcher PJ, Caetano AR, Garcia JF, Hanotte O, Mariani P, Skow LC, Sonstegard TS, Williams JL, Diallo B, Hailemariam L, Martinez ML, Morris CA, et al. Science 2009 324 528 532 19390050
25. Development and characterization of a high density SNP genotyping assay for cattle. Matukumalli LK, Lawley CT, Schnabel RD, Taylor JF, Allan MF, Heaton MP, O'Connell J, Moore SS, Smith TPL, Sonstegard TS, Van Tassel CP, PLoS One 2009 4 5350 10.1371/journal.pone.0005350 19390634
26. Multivariate analysis of a genome-wide association study in dairy cattle. Bolormaa S, Pryce JE, Hayes BJ, Goddard ME, J Dairy Sci 2010 93 3818 3833 10.3168/jds.2009-2980 20655452
27. Accuracy of direct genomic values in Holstein bulls and cows using subsets of SNP markers. Moser G, Khatkar MS, Hayes BJ, Raadsma HW, Genet Sel Evol 2010 42 37 10.1186/1297-9686-42-37 20950478
28. Gilmour AR, Gogel BJ, Cullis BR, Welham SJ, Thompson R, ASReml User Guide Release 1.0 Hemel Hempstead: VSN International Ltd 2002
29. Ensembl 2007. Hubbard TJP, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Fitzgerald S, Fernandez-Banet J, Graf S, Haider S, Hammond M, Herrero J, Holland R, Howe K, Johnson N, Kahari A, Keefe D, Kokocinski F, Kulesha E, Lawson D, Longden I, Melsopp C, Megy K, Meidl P, et al. Nucl Acids Res 2007 35 610 D617 10.1093/nar/gkl996 17148474 (Pubitemid 46056279)
30. Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition. Grisart B, Farnir F, Karim L, Cambisano N, Kim J-J, Kvasz A, Mni M, Simon P, Frère J-M, Coppieters W, Georges M, Proc Nat Acad Sci USA 2004 101 2398 2403 10.1073/pnas.0308518100 14983021 (Pubitemid 38269323)
31. Mechanisms of action of angiogenin. Gao X, Xu Z, Acta Biochim Biophys Sin 2008 40 619 624 10.1111/j.1745-7270.2008.00442.x 18604453 (Pubitemid 352009084)
32. Cocks B, Hobman P, Mcdonagh M, Tester A, Orally administrable dosage forms comprising angiogenin and uses thereof A1.Alexandria, US: Patent EP2307044 A1 2011
33. Mcdonagh M, Cocks B, Tester A, Hobman P, Use of angiogenin or angiogenin agonists for treating disease and disorders A1. Alexandria, US: Patent 20110151016 2011
34. The mouse RNase 4 and RNase 5/RNASE5 1 locus utilizes dual promoters for tissue-specific expression. Dyer KD, Rosenberg HF, Nucl Acids Res 2005 33 1077 1086 10.1093/nar/gki250 15722482 (Pubitemid 41430528)
35. Hypoxia-induced up-regulation of angiogenin in human malignant melanoma. Hartmann A, Kunz M, Köstlin S, Gillitzer R, Toksoy A, Bröcker EB, Klein CE, Cancer Res 1999 59 1578 1583 10197632 (Pubitemid 29160129)
36. Hypoxia up-regulated angiogenin and down-regulated vascular cell adhesion molecule-i expression and secretion in human placental trophoblasts. Rajashekhar G, Loganath A, Roy AC, Chong SS, Wong YC, J Soc Gynecol Investig 2005 12 310 319 10.1016/j.jsgi.2005.02.010 15979542 (Pubitemid 40848454)
37. Hypoxic conditions stimulate the production of angiogenin and vascular endothelial growth factor by human renal proximal tubular epithelial cells in culture. Nakamura M, Yamabe H, Osawa H, Nakamura N, Shimada M, Kumasaka R, Murakami R, Fujita T, Osanai T, Okumura K, Nephrol Dial Transplant 2006 21 1489 1495 10.1093/ndt/gfl041 16490744 (Pubitemid 44063122)
38. An angiogenin-binding protein from endothelial cells. Hu GF, Chang SI, Riordan JF, Vallee BL, Proc Nat Acad Sci USA 1991 88 2227 2231 10.1073/pnas.88.6.2227 2006162 (Pubitemid 21916388)
39. Actin is a surface component of calf pulmonary artery endothelial cells in culture. Moroianu J, Fett JW, Riordan JF, Vallee BL, Proc Nat Acad Sci USA 1993 90 3815 3819 10.1073/pnas.90.9.3815 8483899 (Pubitemid 23134116)
40. Interaction between angiogenin and fibulin 1: evidence and implication. Zhang H, Gao X, Weng C, Xu Z, Acta Biochim Biophys Sin 2008 40 375 380 10.1111/j.1745-7270.2008.00420.x 18465022 (Pubitemid 351704040)
41. Identification and characterization of follistatin as a novel angiogenin-binding protein. Gao X, Hu H, Zhu J, Xu Z, FEBS Lett 2007 581 5505 5510 10.1016/j.febslet.2007.10.059 17991437 (Pubitemid 350101537)
42. Human follistatin-related protein: A structural homologue of follistatin with nuclear localization. Tortoriello DV, Sidis Y, Holtzman DA, Holmes WE, Schneyer AL, Endocrinology 2001 142 3426 3434 10.1210/en.142.8.3426 11459787 (Pubitemid 32681749)
43. Clusters of basic amino acids contribute to RNA binding and nucleolar localization of ribosomal protein L22. Houmani JL, Ruf IK, PLoS One 2009 4 5306 10.1371/journal.pone.0005306 19390581
44. European Bioinformatics Institute http://www.ebi.ac.uk/
45. Angiogenin enhances actin acceleration of plasminogen activation. Hu GF, Riordan JF, Biochem Biophys Res Commun 1993 197 682 687 10.1006/bbrc.1993.2533 8267604 (Pubitemid 24034624)
46. Angiogenin stimulates endothelial cell prostacyclin secretion by activation of phospholipase A2. Bicknell R, Vallee BL, Proc Nat Acad Sci USA 1989 86 1573 1577 10.1073/pnas.86.5.1573 2646638 (Pubitemid 19078945)
47. Angiogenin activates Erk1/2 in human umbilical vein endothelial cells. Liu S, Yu D, Xu ZP, Riordan JF, Hu GF, Biochem Biophys Res Commun 2001 287 305 310 10.1006/bbrc.2001.5568 11549292 (Pubitemid 32912500)
48. Angiogenin activates human umbilical artery smooth muscle cells. Xu ZP, Monti DM, Hu GF, Biochem Biophys Res Commun 2001 285 909 914 10.1006/bbrc.2001.5255 11467837 (Pubitemid 32918022)
49. Angiogenin is a cytotoxic, tRNA-specific ribonuclease in the RNase A superfamily. Saxena SK, Rybak SM, Davey RT, Youle RJ, Ackerman EJ, J Biol Chem 1992 267 21982 21986 1400510
50. Angiogenin cleaves tRNA and promotes stress-induced translational repression. Yamasaki S, Ivanov P, Hu GF, Anderson P, J Cell Biol 2009 185 35 42 10.1083/jcb.200811106 19332886
51. Stress induces tRNA cleavage by angiogenin in mammalian cells. Fu H, Feng J, Liu Q, Sun F, Tie Y, Zhu J, Xing R, Sun Z, Zheng X, FEBS Lett 2009 583 437 442 10.1016/j.febslet.2008.12.043 19114040
52. Angiogenin induces nitric oxide release independently from its RNase activity. Trouillon R, Kang DK, Chang SI, O'Hare D, Chem Commun 2011 47 3421 3423 10.1039/c0cc04527f
53. Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Grisart B, Coppieters W, Farnir F, Karim L, Ford C, Berzi P, Cambisano N, Mni M, Reid S, Simon P, Spelman R, George M, Snell R, Genome Res 2002 12 222 231 10.1101/gr.224202 11827942 (Pubitemid 34162989)