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Volumn 7, Issue 7, 2012, Pages

Identification and dissection of four major QTL affecting milk fat content in the German Holstein-Friesian population

Author keywords

[No Author keywords available]

Indexed keywords

MILK FAT; TRANSCRIPTION FACTOR;

EID: 84863811524     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0040711     Document Type: Article
Times cited : (81)

References (35)
  • 1
    • 77949938195 scopus 로고    scopus 로고
    • Evaluation of five lactation curve models fitted for fat:protein ratio of milk and daily energy balance
    • doi:10.3168/jds.2009-2198
    • Buttchereit N, Stamer E, Junge W, Thaller G, (2010) Evaluation of five lactation curve models fitted for fat:protein ratio of milk and daily energy balance. Journal of Dairy Science 93: 1702-1712 doi:10.3168/jds.2009-2198.
    • (2010) Journal of Dairy Science , vol.93 , pp. 1702-1712
    • Buttchereit, N.1    Stamer, E.2    Junge, W.3    Thaller, G.4
  • 2
    • 77958085213 scopus 로고    scopus 로고
    • Genetic Architecture of Complex Traits and Accuracy of Genomic Prediction: Coat Colour, Milk-Fat Percentage, and Type in Holstein Cattle as Contrasting Model Traits
    • doi:10.1371/journal.pgen.1001139
    • Hayes BJ, Pryce J, Chamberlain AJ, Bowman PJ, Goddard ME, (2010) Genetic Architecture of Complex Traits and Accuracy of Genomic Prediction: Coat Colour, Milk-Fat Percentage, and Type in Holstein Cattle as Contrasting Model Traits. PLoS Genet 6: e1001139 doi:10.1371/journal.pgen.1001139.
    • (2010) PLoS Genet , vol.6
    • Hayes, B.J.1    Pryce, J.2    Chamberlain, A.J.3    Bowman, P.J.4    Goddard, M.E.5
  • 3
    • 70449413833 scopus 로고    scopus 로고
    • Effect of polymorphisms in the FASN, OLR1, PPARGC1A, PRL and STAT5A genes on bovine milk-fat composition
    • doi:10.1111/j.1365-2052.2009.01940.x
    • Schennink A, Bovenhuis H, Léon-Kloosterziel KM, van Arendonk JAM, Visker MHPW, (2009) Effect of polymorphisms in the FASN, OLR1, PPARGC1A, PRL and STAT5A genes on bovine milk-fat composition. Anim. Genet. 40: 909-916 doi:10.1111/j.1365-2052.2009.01940.x.
    • (2009) Anim. Genet , vol.40 , pp. 909-916
    • Schennink, A.1    Bovenhuis, H.2    Léon-Kloosterziel, K.M.3    van Arendonk, J.A.M.4    Visker, M.H.P.W.5
  • 4
    • 22244468049 scopus 로고    scopus 로고
    • Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein cattle
    • doi:10.1101/gr.3806705
    • Cohen-Zinder M, Seroussi E, Larkin DM, Loor JJ, Everts-van der Wind A, et al. (2005) Identification of a missense mutation in the bovine ABCG2 gene with a major effect on the QTL on chromosome 6 affecting milk yield and composition in Holstein cattle. Genome Res. 15: 936-944 doi:10.1101/gr.3806705.
    • (2005) Genome Res , vol.15 , pp. 936-944
    • Cohen-Zinder, M.1    Seroussi, E.2    Larkin, D.M.3    Loor, J.J.4    Everts-van der Wind, A.5
  • 5
    • 78149436393 scopus 로고    scopus 로고
    • Genome Wide Association Studies for Milk Production Traits in Chinese Holstein Population
    • doi:10.1371/journal.pone.0013661
    • Jiang L, Liu J, Sun D, Ma P, Ding X, et al. (2010) Genome Wide Association Studies for Milk Production Traits in Chinese Holstein Population. PLoS ONE 5: e13661 doi:10.1371/journal.pone.0013661.
    • (2010) PLoS ONE , vol.5
    • Jiang, L.1    Liu, J.2    Sun, D.3    Ma, P.4    Ding, X.5
  • 6
    • 0036175484 scopus 로고    scopus 로고
    • Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition
    • doi:10.1101/gr.224202
    • Grisart B, Coppieters W, Farnir F, Karim L, Ford C, et al. (2002) Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res. 12: 222-231 doi:10.1101/gr.224202.
    • (2002) Genome Res , vol.12 , pp. 222-231
    • Grisart, B.1    Coppieters, W.2    Farnir, F.3    Karim, L.4    Ford, C.5
  • 7
    • 0037047067 scopus 로고    scopus 로고
    • Association of a Lysine-232/Alanine Polymorphism in a Bovine Gene Encoding Acyl-CoA:diacylglycerol Acyltransferase (DGAT1) with Variation at a Quantitative Trait Locus for Milk Fat Content
    • doi:10.1073/pnas.142293799
    • Winter A, Krämer W, Werner FAO, Kollers S, Kata S, et al. (2002) Association of a Lysine-232/Alanine Polymorphism in a Bovine Gene Encoding Acyl-CoA:diacylglycerol Acyltransferase (DGAT1) with Variation at a Quantitative Trait Locus for Milk Fat Content. PNAS 99: 9300-9305 doi:10.1073/pnas.142293799.
    • (2002) PNAS , vol.99 , pp. 9300-9305
    • Winter, A.1    Krämer, W.2    Werner, F.A.O.3    Kollers, S.4    Kata, S.5
  • 8
    • 33747828444 scopus 로고    scopus 로고
    • The Role of the Bovine Growth Hormone Receptor and Prolactin Receptor Genes in Milk, Fat and Protein Production in Finnish Ayrshire Dairy Cattle
    • doi:10.1534/genetics.105.046730
    • Viitala S, Szyda J, Blott S, Schulman N, Lidauer M, et al. (2006) The Role of the Bovine Growth Hormone Receptor and Prolactin Receptor Genes in Milk, Fat and Protein Production in Finnish Ayrshire Dairy Cattle. Genetics 173: 2151-2164 doi:10.1534/genetics.105.046730.
    • (2006) Genetics , vol.173 , pp. 2151-2164
    • Viitala, S.1    Szyda, J.2    Blott, S.3    Schulman, N.4    Lidauer, M.5
  • 9
    • 0037274657 scopus 로고    scopus 로고
    • Molecular dissection of a quantitative trait locus: a phenylalanine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition
    • Blott S, Kim J-J, Moisio S, Schmidt-Küntzel A, Cornet A, et al. (2003) Molecular dissection of a quantitative trait locus: a phenylalanine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition. Genetics 163: 253-266.
    • (2003) Genetics , vol.163 , pp. 253-266
    • Blott, S.1    Kim, J.-J.2    Moisio, S.3    Schmidt-Küntzel, A.4    Cornet, A.5
  • 10
    • 0642279220 scopus 로고    scopus 로고
    • Effects of DGAT1 variants on milk production traits in German cattle breeds
    • Thaller G, Krämer W, Winter A, Kaupe B, Erhardt G, et al. (2003) Effects of DGAT1 variants on milk production traits in German cattle breeds. J. Anim. Sci. 81: 1911-1918.
    • (2003) J. Anim. Sci , vol.81 , pp. 1911-1918
    • Thaller, G.1    Krämer, W.2    Winter, A.3    Kaupe, B.4    Erhardt, G.5
  • 11
    • 34748849282 scopus 로고    scopus 로고
    • DGAT1 underlies large genetic variation in milk-fat composition of dairy cows
    • doi:10.1111/j.1365-2052.2007.01635.x
    • Schennink A, Stoop WM, Visker MHPW, Heck JML, Bovenhuis H, et al. (2007) DGAT1 underlies large genetic variation in milk-fat composition of dairy cows. Anim. Genet. 38: 467-473 doi:10.1111/j.1365-2052.2007.01635.x.
    • (2007) Anim. Genet , vol.38 , pp. 467-473
    • Schennink, A.1    Stoop, W.M.2    Visker, M.H.P.W.3    Heck, J.M.L.4    Bovenhuis, H.5
  • 12
    • 67649538526 scopus 로고    scopus 로고
    • Exploring polymorphisms and effects on milk traits of the DGAT1, SCD1 and GHR genes in four cattle breeds
    • doi:10.1016/j.livsci.2009.02.014
    • Signorelli F, Orrù L, Napolitano F, De Matteis G, Scatà MC, et al. (2009) Exploring polymorphisms and effects on milk traits of the DGAT1, SCD1 and GHR genes in four cattle breeds. Livestock Science 125: 74-79 doi:10.1016/j.livsci.2009.02.014.
    • (2009) Livestock Science , vol.125 , pp. 74-79
    • Signorelli, F.1    Orrù, L.2    Napolitano, F.3    De Matteis, G.4    Scatà, M.C.5
  • 13
    • 0027179703 scopus 로고
    • Eps8, a substrate for the epidermal growth factor receptor kinase, enhances EGF-dependent mitogenic signals
    • Fazioli F, Minichiello L, Matoska V, Castagnino P, Miki T, et al. (1993) Eps8, a substrate for the epidermal growth factor receptor kinase, enhances EGF-dependent mitogenic signals. EMBO J 12: 3799-3808.
    • (1993) EMBO J , vol.12 , pp. 3799-3808
    • Fazioli, F.1    Minichiello, L.2    Matoska, V.3    Castagnino, P.4    Miki, T.5
  • 14
    • 77649216053 scopus 로고    scopus 로고
    • EGFR Signaling Through an Akt-SREBP-1-Dependent, Rapamycin-Resistant Pathway Sensitizes Glioblastomas to Antilipogenic Therapy
    • doi:10.1126/scisignal.2000446
    • Guo D, Prins RM, Dang J, Kuga D, Iwanami A, et al. (2009) EGFR Signaling Through an Akt-SREBP-1-Dependent, Rapamycin-Resistant Pathway Sensitizes Glioblastomas to Antilipogenic Therapy. Sci. Signal. 2: ra82 doi:10.1126/scisignal.2000446.
    • (2009) Sci. Signal , vol.2
    • Guo, D.1    Prins, R.M.2    Dang, J.3    Kuga, D.4    Iwanami, A.5
  • 15
    • 33645794065 scopus 로고    scopus 로고
    • Temporal gene expression profiling of liver from periparturient dairy cows reveals complex adaptive mechanisms in hepatic function
    • doi:10.1152/physiolgenomics.00132.2005
    • Loor JJ, Dann HM, Everts RE, Oliveira R, Green CA, et al. (2005) Temporal gene expression profiling of liver from periparturient dairy cows reveals complex adaptive mechanisms in hepatic function. Physiol. Genomics 23: 217-226 doi:10.1152/physiolgenomics.00132.2005.
    • (2005) Physiol. Genomics , vol.23 , pp. 217-226
    • Loor, J.J.1    Dann, H.M.2    Everts, R.E.3    Oliveira, R.4    Green, C.A.5
  • 16
    • 44449113267 scopus 로고    scopus 로고
    • ACSL1, AGPAT6, FABP3, LPIN1, and SLC27A6 are the most abundant isoforms in bovine mammary tissue and their expression is affected by stage of lactation
    • Bionaz M, Loor JJ, (2008) ACSL1, AGPAT6, FABP3, LPIN1, and SLC27A6 are the most abundant isoforms in bovine mammary tissue and their expression is affected by stage of lactation. J. Nutr. 138: 1019-1024.
    • (2008) J. Nutr , vol.138 , pp. 1019-1024
    • Bionaz, M.1    Loor, J.J.2
  • 17
    • 64249157370 scopus 로고    scopus 로고
    • De-novo identification of PPARgamma/RXR binding sites and direct targets during adipogenesis
    • doi:10.1371/journal.pone.0004907
    • Hamza MS, Pott S, Vega VB, Thomsen JS, Kandhadayar GS, et al. (2009) De-novo identification of PPARgamma/RXR binding sites and direct targets during adipogenesis. PLoS ONE 4: e4907 doi:10.1371/journal.pone.0004907.
    • (2009) PLoS ONE , vol.4
    • Hamza, M.S.1    Pott, S.2    Vega, V.B.3    Thomsen, J.S.4    Kandhadayar, G.S.5
  • 18
    • 20644460348 scopus 로고    scopus 로고
    • Factors that control the tissue-specific transcription of the gene for phosphoenolpyruvate carboxykinase-C
    • doi:10.1080/10409230590935479
    • Chakravarty K, Cassuto H, Reshef L, Hanson RW, (2005) Factors that control the tissue-specific transcription of the gene for phosphoenolpyruvate carboxykinase-C. Crit. Rev. Biochem. Mol. Biol. 40: 129-154 doi:10.1080/10409230590935479.
    • (2005) Crit. Rev. Biochem. Mol. Biol , vol.40 , pp. 129-154
    • Chakravarty, K.1    Cassuto, H.2    Reshef, L.3    Hanson, R.W.4
  • 19
    • 65349172408 scopus 로고    scopus 로고
    • Identification of Novel Genes and Pathways Regulating SREBP Transcriptional Activity
    • doi:10.1371/journal.pone.0005197
    • Chatterjee S, Szustakowski JD, Nanguneri NR, Mickanin C, Labow MA, et al. (2009) Identification of Novel Genes and Pathways Regulating SREBP Transcriptional Activity. PLoS ONE 4: e5197 doi:10.1371/journal.pone.0005197.
    • (2009) PLoS ONE , vol.4
    • Chatterjee, S.1    Szustakowski, J.D.2    Nanguneri, N.R.3    Mickanin, C.4    Labow, M.A.5
  • 20
    • 79955756490 scopus 로고    scopus 로고
    • Genome-wide association of milk fatty acids in Dutch dairy cattle
    • doi:10.1186/1471-2156-12-43
    • Bouwman AC, Bovenhuis H, Visker MH, van Arendonk JA, (2011) Genome-wide association of milk fatty acids in Dutch dairy cattle. BMC Genetics 12: 43 doi:10.1186/1471-2156-12-43.
    • (2011) BMC Genetics , vol.12 , pp. 43
    • Bouwman, A.C.1    Bovenhuis, H.2    Visker, M.H.3    van Arendonk, J.A.4
  • 21
    • 33645523238 scopus 로고    scopus 로고
    • Agpat6-a novel lipid biosynthetic gene required for triacylglycerol production in mammary epithelium
    • doi:10.1194/jlr.M500556-JLR200
    • Beigneux AP, Vergnes L, Qiao X, Quatela S, Davis R, et al. (2006) Agpat6-a novel lipid biosynthetic gene required for triacylglycerol production in mammary epithelium. J. Lipid Res. 47: 734-744 doi:10.1194/jlr.M500556-JLR200.
    • (2006) J. Lipid Res , vol.47 , pp. 734-744
    • Beigneux, A.P.1    Vergnes, L.2    Qiao, X.3    Quatela, S.4    Davis, R.5
  • 22
    • 33645519616 scopus 로고    scopus 로고
    • Agpat6 deficiency causes subdermal lipodystrophy and resistance to obesity
    • doi:10.1194/jlr.M500553-JLR200
    • Vergnes L, Beigneux AP, Davis R, Watkins SM, Young SG, et al. (2006) Agpat6 deficiency causes subdermal lipodystrophy and resistance to obesity. J. Lipid Res. 47: 745-754 doi:10.1194/jlr.M500553-JLR200.
    • (2006) J. Lipid Res , vol.47 , pp. 745-754
    • Vergnes, L.1    Beigneux, A.P.2    Davis, R.3    Watkins, S.M.4    Young, S.G.5
  • 23
    • 65149096757 scopus 로고    scopus 로고
    • A whole-genome assembly of the domestic cow, Bos taurus
    • doi:10.1186/gb-2009-10-4-r42
    • Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, et al. (2009) A whole-genome assembly of the domestic cow, Bos taurus. Genome Biology 10: R42 doi:10.1186/gb-2009-10-4-r42.
    • (2009) Genome Biology , vol.10
    • Zimin, A.V.1    Delcher, A.L.2    Florea, L.3    Kelley, D.R.4    Schatz, M.C.5
  • 24
    • 55849133422 scopus 로고    scopus 로고
    • Efficient methods to compute genomic predictions
    • doi:10.3168/jds.2007-0980
    • VanRaden PM, (2008) Efficient methods to compute genomic predictions. J. Dairy Sci. 91: 4414-4423 doi:10.3168/jds.2007-0980.
    • (2008) J. Dairy Sci , vol.91 , pp. 4414-4423
    • VanRaden, P.M.1
  • 25
    • 62649155943 scopus 로고    scopus 로고
    • A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals
    • doi:10.1016/j.ajhg.2009.01.005
    • Browning BL, Browning SR, (2009) A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals. The American Journal of Human Genetics 84: 210-223 doi:10.1016/j.ajhg.2009.01.005.
    • (2009) The American Journal of Human Genetics , vol.84 , pp. 210-223
    • Browning, B.L.1    Browning, S.R.2
  • 26
    • 77950301214 scopus 로고    scopus 로고
    • Variance component model to account for sample structure in genome-wide association studies
    • doi:10.1038/ng.548
    • Kang HM, Sul JH, Service SK, Zaitlen NA, Kong S, et al (2010) Variance component model to account for sample structure in genome-wide association studies. Nature Genetics 42: 348-354 doi:10.1038/ng.548.
    • (2010) Nature Genetics , vol.42 , pp. 348-354
    • Kang, H.M.1    Sul, J.H.2    Service, S.K.3    Zaitlen, N.A.4    Kong, S.5
  • 28
    • 28844465123 scopus 로고    scopus 로고
    • Engineering a software tool for gene structure prediction in higher organisms
    • doi:10.1016/j.infsof.2005.09.005
    • Gremme G, Brendel V, Sparks ME, Kurtz S, (2005) Engineering a software tool for gene structure prediction in higher organisms. Information and Software Technology 47: 965-978 doi:10.1016/j.infsof.2005.09.005.
    • (2005) Information and Software Technology , vol.47 , pp. 965-978
    • Gremme, G.1    Brendel, V.2    Sparks, M.E.3    Kurtz, S.4
  • 29
    • 0035165581 scopus 로고    scopus 로고
    • The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species
    • Quackenbush J, Cho J, Lee D, Liang F, Holt I, et al. (2001) The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species. Nucleic Acids Res. 29: 159-164.
    • (2001) Nucleic Acids Res , vol.29 , pp. 159-164
    • Quackenbush, J.1    Cho, J.2    Lee, D.3    Liang, F.4    Holt, I.5
  • 30
    • 67649876340 scopus 로고    scopus 로고
    • Apollo: A Community Resource for Genome Annotation Editing
    • doi:10.1093/bioinformatics/btp314
    • Lee E, Harris N, Gibson M, Chetty R, Lewis S, (2009) Apollo: A Community Resource for Genome Annotation Editing. Bioinformatics 25: 1836-1837 doi:10.1093/bioinformatics/btp314.
    • (2009) Bioinformatics , vol.25 , pp. 1836-1837
    • Lee, E.1    Harris, N.2    Gibson, M.3    Chetty, R.4    Lewis, S.5
  • 31
    • 21444443478 scopus 로고    scopus 로고
    • MatInspector and Beyond: Promoter Analysis Based on Transcription Factor Binding Sites
    • doi:10.1093/bioinformatics/bti473
    • Cartharius K, Frech K, Grote K, Klocke B, Haltmeier M, et al. (2005) MatInspector and Beyond: Promoter Analysis Based on Transcription Factor Binding Sites. Bioinformatics 21: 2933-2942 doi:10.1093/bioinformatics/bti473.
    • (2005) Bioinformatics , vol.21 , pp. 2933-2942
    • Cartharius, K.1    Frech, K.2    Grote, K.3    Klocke, B.4    Haltmeier, M.5
  • 32
  • 33
    • 57549089243 scopus 로고    scopus 로고
    • Using TESS to predict transcription factor binding sites in DNA sequence
    • doi:10.1002/0471250953.bi0206s21, Chapter 2: Unit 2.6
    • Schug J, (2008) Using TESS to predict transcription factor binding sites in DNA sequence. Curr Protoc Bioinformatics Chapter 2: Unit 2.6 doi:10.1002/0471250953.bi0206s21.
    • (2008) Curr Protoc Bioinformatics
    • Schug, J.1
  • 34
    • 0030872838 scopus 로고    scopus 로고
    • PolyPhred: Automating the Detection and Genotyping of Single Nucleotide Substitutions Using Fluorescence-Based Resequencing
    • doi:10.1093/nar/25.14.2745
    • Nickerson DA, Tobe VO, Taylor SL, (1997) PolyPhred: Automating the Detection and Genotyping of Single Nucleotide Substitutions Using Fluorescence-Based Resequencing. Nucl. Acids Res. 25: 2745-2751 doi:10.1093/nar/25.14.2745.
    • (1997) Nucl. Acids Res , vol.25 , pp. 2745-2751
    • Nickerson, D.A.1    Tobe, V.O.2    Taylor, S.L.3
  • 35
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • Gordon D, Abajian C, Green P, (1998) Consed: a graphical tool for sequence finishing. Genome Res. 8: 195-202.
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3


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