-
1
-
-
58149200943
-
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
-
B.L. Cantarel, P.M. Coutinho, C. Rancurel, T. Bernard, V. Lombard, and B. Henrissat The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics Nucleic Acids Res. 37 2009 233 238 10.1093/nar/gkn663
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 233-238
-
-
Cantarel, B.L.1
Coutinho, P.M.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
Henrissat, B.6
-
2
-
-
0035831255
-
Relationship of sequence and structure to specificity in the α-amylase family of enzymes
-
E.A. MacGregor, S. Janecek, and B. Svensson Relationship of sequence and structure to specificity in the α-amylase family of enzymes Biochim. Biophys. Acta 1546 2001 1 20 10.1016/S0167-4838(00)00302-2
-
(2001)
Biochim. Biophys. Acta
, vol.1546
, pp. 1-20
-
-
MacGregor, E.A.1
Janecek, S.2
Svensson, B.3
-
3
-
-
0037187437
-
Properties and applications of starch-converting enzymes of the α-amylase family
-
M.J. van der Maarel, B. van der Veen, J.C. Uitdehaag, H. Leemhuis, and L. Dijkhuizen Properties and applications of starch-converting enzymes of the α-amylase family J. Biotechnol. 94 2002 137 155 10.1016/S0168-1656(01)00407-2
-
(2002)
J. Biotechnol.
, vol.94
, pp. 137-155
-
-
Van Der Maarel, M.J.1
Van Der Veen, B.2
Uitdehaag, J.C.3
Leemhuis, H.4
Dijkhuizen, L.5
-
4
-
-
84874650404
-
Starch modification with microbial α-glucanotransferase enzymes
-
M.J. van der Maarel, and H. Leemhuis Starch modification with microbial α-glucanotransferase enzymes Carbohydr. Polym. 93 2013 116 121 10.1016/j.carbpol.2012.01.065
-
(2013)
Carbohydr. Polym.
, vol.93
, pp. 116-121
-
-
Van Der Maarel, M.J.1
Leemhuis, H.2
-
5
-
-
33750968542
-
The concept of the α-amylase family: a rational tool for interconverting glucanohydrolases/glucanotransferases, and their specificities
-
T. Kuriki, H. Takata, M. Yanase, K. Ohdan, K. Fujii, Y. Terada, T. Takaha, H. Hondoh, Y. Matsuura, and T. Imanaka The concept of the α-amylase family: a rational tool for interconverting glucanohydrolases/glucanotransferases, and their specificities J. Appl. Glycosci. 53 2006 155 161 10.5458/jag.53.155
-
(2006)
J. Appl. Glycosci.
, vol.53
, pp. 155-161
-
-
Kuriki, T.1
Takata, H.2
Yanase, M.3
Ohdan, K.4
Fujii, K.5
Terada, Y.6
Takaha, T.7
Hondoh, H.8
Matsuura, Y.9
Imanaka, T.10
-
6
-
-
84899863334
-
α-Amylase - an enzyme specificity found in various families of glycoside hydrolases
-
S. Janecek, B. Svensson, and E.A. MacGregor α-Amylase - an enzyme specificity found in various families of glycoside hydrolases Cell. Mol. Life Sci. 71 2014 1149 1170 10.1007/s00018-013-1388-z
-
(2014)
Cell. Mol. Life Sci.
, vol.71
, pp. 1149-1170
-
-
Janecek, S.1
Svensson, B.2
Macgregor, E.A.3
-
7
-
-
0024042231
-
Molecular characterization of malQ, the structural gene for the Escherichia coli enzyme amylomaltase
-
A.P. Pugsley, and C. Dubreuil Molecular characterization of malQ, the structural gene for the Escherichia coli enzyme amylomaltase Mol. Microbiol. 2 1988 473 479 10.1111/j.1365-2958.1988.tb00053.x
-
(1988)
Mol. Microbiol.
, vol.2
, pp. 473-479
-
-
Pugsley, A.P.1
Dubreuil, C.2
-
8
-
-
0030730274
-
Molecular analysis of a Clostridium butyricum NCIMB 7423 gene encoding 4-α-glucanotransferase and characterization of the recombinant enzyme produced in Escherichia coli
-
S.K. Goda, O. Eissa, M. Akhtar, and N.P. Minton Molecular analysis of a Clostridium butyricum NCIMB 7423 gene encoding 4-α-glucanotransferase and characterization of the recombinant enzyme produced in Escherichia coli Microbiology 143 1997 3287 3294 10.1099/00221287-143-10-3287
-
(1997)
Microbiology
, vol.143
, pp. 3287-3294
-
-
Goda, S.K.1
Eissa, O.2
Akhtar, M.3
Minton, N.P.4
-
9
-
-
0032985721
-
Thermus aquaticus ATCC 33923 amylomaltase gene cloning and expression and enzyme characterization: production of cycloamylose
-
Y. Terada, K. Fujii, T. Takaha, and S. Okada Thermus aquaticus ATCC 33923 amylomaltase gene cloning and expression and enzyme characterization: production of cycloamylose Appl. Environ. Microbiol. 65 1999 910 915
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 910-915
-
-
Terada, Y.1
Fujii, K.2
Takaha, T.3
Okada, S.4
-
10
-
-
0037375065
-
A cycloamylose-forming hyperthermostable 4-α-glucanotransferase of Aquifex aeolicus expressed in Escherichia coli
-
S.H. Bhuiyan, M. Kitaoka, and K. Hayashi A cycloamylose-forming hyperthermostable 4-α-glucanotransferase of Aquifex aeolicus expressed in Escherichia coli J. Mol. Catal. B Enzym. 22 2003 45 53 10.1016/S1381-1177(03)00005-5
-
(2003)
J. Mol. Catal. B Enzym.
, vol.22
, pp. 45-53
-
-
Bhuiyan, S.H.1
Kitaoka, M.2
Hayashi, K.3
-
11
-
-
44649096836
-
The unique glycoside hydrolase family 77 amylomaltase from Borrelia burgdorferi with only catalytic triad conserved
-
A. Godany, B. Vidova, and S. Janecek The unique glycoside hydrolase family 77 amylomaltase from Borrelia burgdorferi with only catalytic triad conserved FEMS Microbiol. Lett. 284 2008 84 91 10.1111/j.1574-6968.2008.01191.x
-
(2008)
FEMS Microbiol. Lett.
, vol.284
, pp. 84-91
-
-
Godany, A.1
Vidova, B.2
Janecek, S.3
-
12
-
-
84879500801
-
Biochemical characterization of 4-α-glucanotransferase from Saccharophagus degradans 2-40 and its potential role in glycogen degradation
-
S. Hwang, K.H. Choi, J. Kim, and J. Cha Biochemical characterization of 4-α-glucanotransferase from Saccharophagus degradans 2-40 and its potential role in glycogen degradation FEMS Microbiol. Lett. 344 2013 145 151 10.1111/1574-6968.12167
-
(2013)
FEMS Microbiol. Lett.
, vol.344
, pp. 145-151
-
-
Hwang, S.1
Choi, K.H.2
Kim, J.3
Cha, J.4
-
13
-
-
71749084621
-
Characterization of 4-α-glucanotransferase from Synechocystis sp. PCC 6803 and its application to various corn starches
-
B.H. Lee, D.K. Oh, and S.H. Yoo Characterization of 4-α-glucanotransferase from Synechocystis sp. PCC 6803 and its application to various corn starches N. Biotechnol. 26 2009 29 36 10.1016/j.nbt.2009.06.981
-
(2009)
N. Biotechnol.
, vol.26
, pp. 29-36
-
-
Lee, B.H.1
Oh, D.K.2
Yoo, S.H.3
-
14
-
-
80051782822
-
A novel amylomaltase from Corynebacterium glutamicum and analysis of the large-ring cyclodextrin products
-
W. Srisimarat, A. Powviriyakul, J. Kaulpiboon, K. Krusong, W. Zimmermann, and P. Pongsawasdi A novel amylomaltase from Corynebacterium glutamicum and analysis of the large-ring cyclodextrin products J. Incl. Phenom. Macrocycl. Chem. 70 2011 369 375 10.1007/s10847-010-9890-5
-
(2011)
J. Incl. Phenom. Macrocycl. Chem.
, vol.70
, pp. 369-375
-
-
Srisimarat, W.1
Powviriyakul, A.2
Kaulpiboon, J.3
Krusong, K.4
Zimmermann, W.5
Pongsawasdi, P.6
-
15
-
-
84893612701
-
Direct cloning of gene encoding a novel amylomaltase from soil bacterial DNA for large-ring cyclodextrin production
-
K. Sawasdee, P. Rudeekulthamrong, W. Zimmermann, S. Murakami, P. Pongsawasdi, and J. Kaulpiboo Direct cloning of gene encoding a novel amylomaltase from soil bacterial DNA for large-ring cyclodextrin production Appl. Biochem. Microbiol. 50 2014 17 24 10.1134/S000368381306015X
-
(2014)
Appl. Biochem. Microbiol.
, vol.50
, pp. 17-24
-
-
Sawasdee, K.1
Rudeekulthamrong, P.2
Zimmermann, W.3
Murakami, S.4
Pongsawasdi, P.5
Kaulpiboo, J.6
-
16
-
-
25144432239
-
Amylomaltase of Pyrobaculum aerophilum IM2 produces thermoreversible starch gels
-
T. Kaper, B. Talik, T.J. Ettema, H. Bos, M.J. van der Maarel, and L. Dijkhuizen Amylomaltase of Pyrobaculum aerophilum IM2 produces thermoreversible starch gels Appl. Environ. Microbiol. 71 2005 5098 5106 10.1128/AEM.71.9.5098-5106.2005
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 5098-5106
-
-
Kaper, T.1
Talik, B.2
Ettema, T.J.3
Bos, H.4
Van Der Maarel, M.J.5
Dijkhuizen, L.6
-
18
-
-
0027458378
-
Disproportionating enzyme (4-α-glucanotransferase; EC 2.4.1.25) of potato. Purification, molecular cloning, and potential role in starch metabolism
-
T. Takaha, M. Yanase, S. Okada, and S.M. Smith Disproportionating enzyme (4-α-glucanotransferase; EC 2.4.1.25) of potato. Purification, molecular cloning, and potential role in starch metabolism J. Biol. Chem. 268 1993 1391 1396
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 1391-1396
-
-
Takaha, T.1
Yanase, M.2
Okada, S.3
Smith, S.M.4
-
19
-
-
0038182967
-
STA11, a Chlamydomonas reinhardtii locus required for normal starch granule biogenesis, encodes disproportionating enzyme. Further evidence for a function of α-1,4 glucanotransferases during starch granule biosynthesis in green algae
-
F. Wattebled, J.P. Ral, D. Dauvillee, A.M. Myers, M.G. James, R. Schlichting, C. Giersch, S.G. Ball, and C.D. Hulst STA11, a Chlamydomonas reinhardtii locus required for normal starch granule biogenesis, encodes disproportionating enzyme. Further evidence for a function of α-1,4 glucanotransferases during starch granule biosynthesis in green algae Plant Physiol. 132 2003 137 145 10.1104/pp.102.016587
-
(2003)
Plant Physiol.
, vol.132
, pp. 137-145
-
-
Wattebled, F.1
Ral, J.P.2
Dauvillee, D.3
Myers, A.M.4
James, M.G.5
Schlichting, R.6
Giersch, C.7
Ball, S.G.8
Hulst, C.D.9
-
20
-
-
33744457935
-
Characterisation of disproportionating enzyme from wheat endosperm
-
N.S. Bresolin, Z. Li, B. Kosar-Hashemi, I.J. Tetlow, M. Chatterjee, S. Rahman, M.K. Morell, and C.A. Howitt Characterisation of disproportionating enzyme from wheat endosperm Planta 224 2006 20 31 10.1007/s00425-005-0187-7
-
(2006)
Planta
, vol.224
, pp. 20-31
-
-
Bresolin, N.S.1
Li, Z.2
Kosar-Hashemi, B.3
Tetlow, I.J.4
Chatterjee, M.5
Rahman, S.6
Morell, M.K.7
Howitt, C.A.8
-
22
-
-
84891763855
-
The carbohydrate-active enzymes database (CAZy) in 2013
-
V. Lombard, H. Golaconda Ramulu, E. Drula, P.M. Coutinho, and B. Henrissat The carbohydrate-active enzymes database (CAZy) in 2013 Nucleic Acids Res. 42 2014 490 495 10.1093/nar/gkt1178
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 490-495
-
-
Lombard, V.1
Golaconda Ramulu, H.2
Drula, E.3
Coutinho, P.M.4
Henrissat, B.5
-
23
-
-
62549130749
-
Fine structural properties of natural and synthetic glycogens
-
H. Takata, H. Kajiura, T. Furuyashiki, R. Kakutani, and T. Kuriki Fine structural properties of natural and synthetic glycogens Carbohydr. Res. 344 2009 654 659 10.1016/j.carres.2009.01.008
-
(2009)
Carbohydr. Res.
, vol.344
, pp. 654-659
-
-
Takata, H.1
Kajiura, H.2
Furuyashiki, T.3
Kakutani, R.4
Kuriki, T.5
-
24
-
-
77951974507
-
Safety evaluation of amylomaltase from Thermus aquaticus
-
S. Tafazoli, A.W. Wong, T. Akiyama, H. Kajiura, E. Tomioka, I. Kojima, H. Takata, and T. Kuriki Safety evaluation of amylomaltase from Thermus aquaticus Regul. Toxicol. Pharmacol. 57 2010 62 69 10.1016/j.yrtph.2009.12.009
-
(2010)
Regul. Toxicol. Pharmacol.
, vol.57
, pp. 62-69
-
-
Tafazoli, S.1
Wong, A.W.2
Akiyama, T.3
Kajiura, H.4
Tomioka, E.5
Kojima, I.6
Takata, H.7
Kuriki, T.8
-
25
-
-
77953361600
-
Safety evaluation of an enzymatically-synthesized glycogen (ESG)
-
S. Tafazoli, A.W. Wong, H. Kajiura, R. Kakutani, T. Furuyashiki, H. Takata, and T. Kuriki Safety evaluation of an enzymatically-synthesized glycogen (ESG) Regul. Toxicol. Pharmacol. 57 2010 210 219 10.1016/j.yrtph.2010.02.009
-
(2010)
Regul. Toxicol. Pharmacol.
, vol.57
, pp. 210-219
-
-
Tafazoli, S.1
Wong, A.W.2
Kajiura, H.3
Kakutani, R.4
Furuyashiki, T.5
Takata, H.6
Kuriki, T.7
-
26
-
-
84875466453
-
Enzymatic synthesis of acarviosyl-maltooligosaccharides using disproportionating enzyme 1
-
T. Tagami, Y. Tanaka, H. Mori, M. Okuyama, and A. Kimura Enzymatic synthesis of acarviosyl-maltooligosaccharides using disproportionating enzyme 1 Biosci. Biotechnol. Biochem. 77 2013 312 319 10.1271/bbb.120732
-
(2013)
Biosci. Biotechnol. Biochem.
, vol.77
, pp. 312-319
-
-
Tagami, T.1
Tanaka, Y.2
Mori, H.3
Okuyama, M.4
Kimura, A.5
-
27
-
-
0034711947
-
Crystal structure of amylomaltase from Thermus aquaticus, a glycosyltransferase catalysing the production of large cyclic glucans
-
I. Przylas, K. Tomoo, Y. Terada, T. Takaha, K. Fujii, W. Saenger, and N. Sträter Crystal structure of amylomaltase from Thermus aquaticus, a glycosyltransferase catalysing the production of large cyclic glucans J. Mol. Biol. 296 2000 873 886 10.1006/jmbi.1999.3503
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 873-886
-
-
Przylas, I.1
Tomoo, K.2
Terada, Y.3
Takaha, T.4
Fujii, K.5
Saenger, W.6
Sträter, N.7
-
28
-
-
34447132905
-
Three-way stabilization of the covalent intermediate in amylomaltase, an α-amylase-like transglycosylase
-
T.R. Barends, J.B. Bultema, T. Kaper, M.J. van der Maarel, L. Dijkhuizen, and B.W. Dijkstra Three-way stabilization of the covalent intermediate in amylomaltase, an α-amylase-like transglycosylase J. Biol. Chem. 282 2007 17242 17249 10.1074/jbc.M701444200
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 17242-17249
-
-
Barends, T.R.1
Bultema, J.B.2
Kaper, T.3
Van Der Maarel, M.J.4
Dijkhuizen, L.5
Dijkstra, B.W.6
-
29
-
-
78650789668
-
Structural and functional analysis of substrate recognition by the 250s loop in amylomaltase from Thermus brockianus
-
J.H. Jung, T.Y. Jung, D.H. Seo, S.M. Yoon, H.C. Choi, B.C. Park, C.S. Park, and E.J. Woo Structural and functional analysis of substrate recognition by the 250s loop in amylomaltase from Thermus brockianus Proteins 79 2011 633 644 10.1002/prot.22911
-
(2011)
Proteins
, vol.79
, pp. 633-644
-
-
Jung, J.H.1
Jung, T.Y.2
Seo, D.H.3
Yoon, S.M.4
Choi, H.C.5
Park, B.C.6
Park, C.S.7
Woo, E.J.8
-
31
-
-
0012286188
-
How many conserved sequence regions are there in the α-amylase family?
-
S. Janecek How many conserved sequence regions are there in the α-amylase family? Biologia 57 Suppl.11 2002 29 41
-
(2002)
Biologia
, vol.57
, pp. 29-41
-
-
Janecek, S.1
-
32
-
-
0346306302
-
The invariant residues in the α-amylase family: just the catalytic triad
-
M. Machovic, and S. Janecek The invariant residues in the α-amylase family: just the catalytic triad Biologia 58 2003 1127 1132
-
(2003)
Biologia
, vol.58
, pp. 1127-1132
-
-
Machovic, M.1
Janecek, S.2
-
33
-
-
0031470826
-
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
-
C.M. Fraser, S. Casjens, W.M. Huang, G.G. Sutton, R. Clayton, R. Lathigra, O. White, K.A. Ketchum, R. Dodson, E.K. Hickey, M. Gwinn, B. Dougherty, J.F. Tomb, R.D. Fleischmann, D. Richardson, J. Peterson, A.R. Kerlavage, J. Quackenbush, S. Salzberg, M. Hanson, R. van Vugt, N. Palmer, M.D. Adams, J. Gocayne, J. Weidman, T. Utterback, L. Watthey, L. McDonald, P. Artiach, C. Bowman, S. Garland, C. Fuji, M.D. Cotton, K. Horst, K. Roberts, B. Hatch, H.O. Smith, and J.C. Venter Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi Nature 390 1997 580 586 10.1038/37551
-
(1997)
Nature
, vol.390
, pp. 580-586
-
-
Fraser, C.M.1
Casjens, S.2
Huang, W.M.3
Sutton, G.G.4
Clayton, R.5
Lathigra, R.6
White, O.7
Ketchum, K.A.8
Dodson, R.9
Hickey, E.K.10
Gwinn, M.11
Dougherty, B.12
Tomb, J.F.13
Fleischmann, R.D.14
Richardson, D.15
Peterson, J.16
Kerlavage, A.R.17
Quackenbush, J.18
Salzberg, S.19
Hanson, M.20
Van Vugt, R.21
Palmer, N.22
Adams, M.D.23
Gocayne, J.24
Weidman, J.25
Utterback, T.26
Watthey, L.27
McDonald, L.28
Artiach, P.29
Bowman, C.30
Garland, S.31
Fuji, C.32
Cotton, M.D.33
Horst, K.34
Roberts, K.35
Hatch, B.36
Smith, H.O.37
Venter, J.C.38
more..
-
34
-
-
1942533694
-
Repression of a novel isoform of disproportionating enzyme (stDPE2) in potato leads to inhibition of starch degradation in leaves but not tubers stored at low temperature
-
J.R. Lloyd, A. Blennow, K. Burhenne, and J. Kossmann Repression of a novel isoform of disproportionating enzyme (stDPE2) in potato leads to inhibition of starch degradation in leaves but not tubers stored at low temperature Plant Physiol. 134 2004 1347 1354 10.1104/pp. 103.038026
-
(2004)
Plant Physiol.
, vol.134
, pp. 1347-1354
-
-
Lloyd, J.R.1
Blennow, A.2
Burhenne, K.3
Kossmann, J.4
-
35
-
-
77956713405
-
Repression of both isoforms of disproportionating enzyme leads to higher malto-oligosaccharide content and reduced growth in potato
-
H. Lütken, J.R. Lloyd, M.A. Glaring, L. Baunsgaard, K.H. Laursen, A. Haldrup, J. Kossmann, and A. Blennow Repression of both isoforms of disproportionating enzyme leads to higher malto-oligosaccharide content and reduced growth in potato Planta 232 2010 1127 1139 10.1007/s00425-010-1245-3
-
(2010)
Planta
, vol.232
, pp. 1127-1139
-
-
Lütken, H.1
Lloyd, J.R.2
Glaring, M.A.3
Baunsgaard, L.4
Laursen, K.H.5
Haldrup, A.6
Kossmann, J.7
Blennow, A.8
-
36
-
-
1642416044
-
A cytosolic glucosyltransferase is required for conversion of starch to sucrose in Arabidopsis leaves at night
-
T. Chia, D. Thorneycroft, A. Chapple, G. Messerli, J. Chen, S.C. Zeeman, S.M. Smith, and A.M. Smith A cytosolic glucosyltransferase is required for conversion of starch to sucrose in Arabidopsis leaves at night Plant J. 37 2004 853 863 10.1111/j.1365-313X.2003.02012.x
-
(2004)
Plant J.
, vol.37
, pp. 853-863
-
-
Chia, T.1
Thorneycroft, D.2
Chapple, A.3
Messerli, G.4
Chen, J.5
Zeeman, S.C.6
Smith, S.M.7
Smith, A.M.8
-
37
-
-
0742319992
-
The role of amylomaltase in maltose metabolism in the cytosol of photosynthetic cells
-
Y. Lu, and T.D. Sharkey The role of amylomaltase in maltose metabolism in the cytosol of photosynthetic cells Planta 218 2004 466 473 10.1007/s00425-003-1127-z
-
(2004)
Planta
, vol.218
, pp. 466-473
-
-
Lu, Y.1
Sharkey, T.D.2
-
38
-
-
51049108621
-
Domain characterization of a 4-α-glucanotransferase essential for maltose metabolism in photosynthetic leaves
-
J.M. Steichen, R.V. Petty, and T.D. Sharkey Domain characterization of a 4-α-glucanotransferase essential for maltose metabolism in photosynthetic leaves J. Biol. Chem. 283 2008 20797 20804 10.1074/jbc.M803051200
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 20797-20804
-
-
Steichen, J.M.1
Petty, R.V.2
Sharkey, T.D.3
-
39
-
-
84885158803
-
A bacterial glucanotransferase can replace the complex maltose metabolism required for starch to sucrose conversion in leaves at night
-
C. Ruzanski, J. Smirnova, M. Rejzek, D. Cockburn, H.L. Pedersen, M. Pike, W.G. Willats, B. Svensson, M. Steup, O. Ebenhöh, A.M. Smith, and R.A. Field A bacterial glucanotransferase can replace the complex maltose metabolism required for starch to sucrose conversion in leaves at night J. Biol. Chem. 288 2013 28581 28598 10.1074/jbc.M113.497867
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 28581-28598
-
-
Ruzanski, C.1
Smirnova, J.2
Rejzek, M.3
Cockburn, D.4
Pedersen, H.L.5
Pike, M.6
Willats, W.G.7
Svensson, B.8
Steup, M.9
Ebenhöh, O.10
Smith, A.M.11
Field, R.A.12
-
40
-
-
80054683038
-
Structural and evolutionary aspects of two families of non-catalytic domains present in starch and glycogen binding proteins from microbes, plants and animals
-
S. Janecek, B. Svensson, and E.A. MacGregor Structural and evolutionary aspects of two families of non-catalytic domains present in starch and glycogen binding proteins from microbes, plants and animals Enzyme Microb. Technol. 49 2011 429 440 10.1016/j.enzmictec.2011.07.002
-
(2011)
Enzyme Microb. Technol.
, vol.49
, pp. 429-440
-
-
Janecek, S.1
Svensson, B.2
MacGregor, E.A.3
-
41
-
-
0025183708
-
Basic local alignment search tool
-
S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410 10.1016/S0022-2836(05)80360-2
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
42
-
-
84861207409
-
Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy
-
A.J. Reid, S.J. Vermont, J.A. Cotton, D. Harris, G.A. Hill-Cawthorne, S. Konen-Waisman, S.M. Latham, T. Mourier, R. Norton, M.A. Quail, M. Sanders, D. Shanmugam, A. Sohal, J.D. Wasmuth, B. Brunk, M.E. Grigg, J.C. Howard, J. Parkinson, D.S. Roos, A.J. Trees, M. Berriman, A. Pain, and J.M. Wastling Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy PLoS Pathog. 8 2012 e1002567 10.1371/journal.ppat.1002567
-
(2012)
PLoS Pathog.
, vol.8
-
-
Reid, A.J.1
Vermont, S.J.2
Cotton, J.A.3
Harris, D.4
Hill-Cawthorne, G.A.5
Konen-Waisman, S.6
Latham, S.M.7
Mourier, T.8
Norton, R.9
Quail, M.A.10
Sanders, M.11
Shanmugam, D.12
Sohal, A.13
Wasmuth, J.D.14
Brunk, B.15
Grigg, M.E.16
Howard, J.C.17
Parkinson, J.18
Roos, D.S.19
Trees, A.J.20
Berriman, M.21
Pain, A.22
Wastling, J.M.23
more..
-
43
-
-
0034997496
-
A critical role for disproportionating enzyme in starch breakdown is revealed by a knock-out mutation in Arabidopsis
-
J.H. Critchley, S.C. Zeeman, T. Takaha, A.M. Smith, and S.M. Smith A critical role for disproportionating enzyme in starch breakdown is revealed by a knock-out mutation in Arabidopsis Plant J. 26 2001 89 100 10.1046/j.1365-313x.2001.01012.x
-
(2001)
Plant J.
, vol.26
, pp. 89-100
-
-
Critchley, J.H.1
Zeeman, S.C.2
Takaha, T.3
Smith, A.M.4
Smith, S.M.5
-
44
-
-
84891797680
-
GenBank
-
D.A. Benson, K. Clark, I. Karsch-Mizrachi, D.J. Lipman, J. Ostell, and E.W. Sayers GenBank Nucleic Acids Res. 42 2014 D32 D37 10.1093/nar/gkt1030
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D32-D37
-
-
Benson, D.A.1
Clark, K.2
Karsch-Mizrachi, I.3
Lipman, D.J.4
Ostell, J.5
Sayers, E.W.6
-
45
-
-
84891783174
-
Activities at the Universal Protein Resource (UniProt)
-
UniProt Consortium Activities at the Universal Protein Resource (UniProt) Nucleic Acids Res. 42 2014 D191 D198 10.1093/nar/gkt1140
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D191-D198
-
-
-
46
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
M.A. Larkin, G. Blackshields, N.P. Brown, R. Chenna, P.A. McGettigan, H. McWilliam, F. Valentin, I.M. Wallace, A. Wilm, R. Lopez, J.D. Thompson, T.J. Gibson, and D.G. Higgins Clustal W and Clustal X version 2.0 Bioinformatics 23 2007 2947 2948 10.1093/bioinformatics/btm404
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
47
-
-
63849246525
-
Protein structure prediction on the Web: a case study using the Phyre server
-
L.A. Kelley, and M.J. Sternberg Protein structure prediction on the Web: a case study using the Phyre server Nat. Protoc. 4 2009 363 371 10.1038/nprot.2009.2
-
(2009)
Nat. Protoc.
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
48
-
-
2442456104
-
A method for simultaneous alignment of multiple protein structures
-
M. Shatsky, R. Nussinov, and H.J. Wolfson A method for simultaneous alignment of multiple protein structures Proteins 56 2004 143 156 10.1002/prot.10628
-
(2004)
Proteins
, vol.56
, pp. 143-156
-
-
Shatsky, M.1
Nussinov, R.2
Wolfson, H.J.3
-
49
-
-
0033694762
-
X-ray structure of acarbose bound to amylomaltase from Thermus aquaticus. Implications for the synthesis of large cyclic glucans
-
I. Przylas, Y. Terada, K. Fujii, T. Takaha, W. Saenger, and N. Strater X-ray structure of acarbose bound to amylomaltase from Thermus aquaticus. Implications for the synthesis of large cyclic glucans Eur. J. Biochem. 267 2000 6903 6913 10.1046/j.1432-1033.2000.01790.x
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 6903-6913
-
-
Przylas, I.1
Terada, Y.2
Fujii, K.3
Takaha, T.4
Saenger, W.5
Strater, N.6
-
50
-
-
13444270892
-
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema
-
N. Deshpande, K.J. Addess, W.F. Bluhm, J.C. Merino-Ott, W. Townsend-Merino, Q. Zhang, C. Knezevich, L. Xie, L. Chen, Z. Feng, R.K. Green, J.L. Flippen-Anderson, J. Westbrook, H.M. Berman, and P.E. Bourne The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema Nucleic Acids Res. 33 2005 D233 D237 10.1093/nar/gki057
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. D233-D237
-
-
Deshpande, N.1
Addess, K.J.2
Bluhm, W.F.3
Merino-Ott, J.C.4
Townsend-Merino, W.5
Zhang, Q.6
Knezevich, C.7
Xie, L.8
Chen, L.9
Feng, Z.10
Green, R.K.11
Flippen-Anderson, J.L.12
Westbrook, J.13
Berman, H.M.14
Bourne, P.E.15
-
52
-
-
33750341148
-
Comparative genomics of the lactic acid bacteria
-
K. Makarova, A. Slesarev, Y. Wolf, A. Sorokin, B. Mirkin, E. Koonin, A. Pavlov, N. Pavlova, V. Karamychev, N. Polouchine, V. Shakhova, I. Grigoriev, Y. Lou, D. Rohksar, S. Lucas, K. Huang, D.M. Goodstein, T. Hawkins, V. Plengvidhya, D. Welker, J. Hughes, Y. Goh, A. Benson, K. Baldwin, J.H. Lee, I. Díaz-Muniz, B. Dosti, V. Smeianov, W. Wechter, R. Barabote, G. Lorca, E. Altermann, R. Barrangou, B. Ganesan, Y. Xie, H. Rawsthorne, D. Tamir, C. Parker, F. Breidt, J. Broadbent, R. Hutkins, D.O'. Sullivan, J. Steele, G. Unlu, M. Saier, T. Klaenhammer, P. Richardson, S. Kozyavkin, B. Weimer, and D. Mills Comparative genomics of the lactic acid bacteria Proc. Natl. Acad. Sci. 103 2006 15611 15616 10.1073/pnas.0607117103
-
(2006)
Proc. Natl. Acad. Sci.
, vol.103
, pp. 15611-15616
-
-
Makarova, K.1
Slesarev, A.2
Wolf, Y.3
Sorokin, A.4
Mirkin, B.5
Koonin, E.6
Pavlov, A.7
Pavlova, N.8
Karamychev, V.9
Polouchine, N.10
Shakhova, V.11
Grigoriev, I.12
Lou, Y.13
Rohksar, D.14
Lucas, S.15
Huang, K.16
Goodstein, D.M.17
Hawkins, T.18
Plengvidhya, V.19
Welker, D.20
Hughes, J.21
Goh, Y.22
Benson, A.23
Baldwin, K.24
Lee, J.H.25
Díaz-Muniz, I.26
Dosti, B.27
Smeianov, V.28
Wechter, W.29
Barabote, R.30
Lorca, G.31
Altermann, E.32
Barrangou, R.33
Ganesan, B.34
Xie, Y.35
Rawsthorne, H.36
Tamir, D.37
Parker, C.38
Breidt, F.39
Broadbent, J.40
Hutkins, R.41
Sullivan, D.O.42
Steele, J.43
Unlu, G.44
Saier, M.45
Klaenhammer, T.46
Richardson, P.47
Kozyavkin, S.48
Weimer, B.49
Mills, D.50
more..
-
53
-
-
84891782659
-
Pfam: the protein families database
-
R.D. Finn, A. Bateman, J. Clements, P. Coggill, R.Y. Eberhardt, S.R. Eddy, A. Heger, K. Hetherington, L. Holm, J. Mistry, E.L. Sonnhammer, J. Tate, and M. Punta Pfam: the protein families database Nucleic Acids Res. 42 2014 D222 D230 10.1093/nar/gkt1223
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
Heger, A.7
Hetherington, K.8
Holm, L.9
Mistry, J.10
Sonnhammer, E.L.11
Tate, J.12
Punta, M.13
-
54
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
N. Saitou, and M. Nei The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
55
-
-
0000461280
-
Confidence-limits on phylogenies - an approach using the bootstrap
-
J. Felsenstein Confidence-limits on phylogenies - an approach using the bootstrap Evolution 39 1985 783 791 10.2307/2408678
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
56
-
-
33845873289
-
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
-
I. Letunic, and P. Bork Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation Bioinformatics 23 2007 127 128 10.1093/bioinformatics/btl529
-
(2007)
Bioinformatics
, vol.23
, pp. 127-128
-
-
Letunic, I.1
Bork, P.2
-
57
-
-
26844434953
-
Use of random and saturation mutageneses to improve the properties of Thermus aquaticus amylomaltase for efficient production of cycloamyloses
-
K. Fujii, H. Minagawa, Y. Terada, T. Takaha, T. Kuriki, J. Shimada, and H. Kaneko Use of random and saturation mutageneses to improve the properties of Thermus aquaticus amylomaltase for efficient production of cycloamyloses Appl. Environ. Microbiol. 71 2005 5823 5827 10.1128/AEM.71.10.5823-5827.2005
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 5823-5827
-
-
Fujii, K.1
Minagawa, H.2
Terada, Y.3
Takaha, T.4
Kuriki, T.5
Shimada, J.6
Kaneko, H.7
-
58
-
-
33947134880
-
Function of second glucan binding site including tyrosines 54 and 101 in Thermus aquaticus amylomaltase
-
K. Fujii, H. Minagawa, Y. Terada, T. Takaha, T. Kuriki, J. Shimada, and H. Kaneko Function of second glucan binding site including tyrosines 54 and 101 in Thermus aquaticus amylomaltase J. Biosci. Bioeng. 103 2007 167 173 10.1263/jbb.103.167
-
(2007)
J. Biosci. Bioeng.
, vol.103
, pp. 167-173
-
-
Fujii, K.1
Minagawa, H.2
Terada, Y.3
Takaha, T.4
Kuriki, T.5
Shimada, J.6
Kaneko, H.7
-
59
-
-
33751335001
-
Protein engineering of amylomaltase from Thermus aquaticus with random and saturation mutageneses
-
K. Fujii, H. Minagawa, Y. Terada, T. Takaha, T. Kuriki, J. Shimada, and H. Kaneko Protein engineering of amylomaltase from Thermus aquaticus with random and saturation mutageneses Biologia 60 Suppl.16 2005 97 102
-
(2005)
Biologia
, vol.60
, pp. 97-102
-
-
Fujii, K.1
Minagawa, H.2
Terada, Y.3
Takaha, T.4
Kuriki, T.5
Shimada, J.6
Kaneko, H.7
-
60
-
-
84899850318
-
Molecular mutagenesis at Tyr-101 of the amylomaltase transcribed from a gene isolated from soil DNA
-
S. Watanasatitarpa, P. Rudeekulthamrong, K. Krusong, W. Srisimarat, W. Zimmermann, P. Pongsawasdi, and J. Kaulpiboon Molecular mutagenesis at Tyr-101 of the amylomaltase transcribed from a gene isolated from soil DNA Appl. Biochem. Microbiol. 50 2014 243 252 10.1134/S0003683814030168
-
(2014)
Appl. Biochem. Microbiol.
, vol.50
, pp. 243-252
-
-
Watanasatitarpa, S.1
Rudeekulthamrong, P.2
Krusong, K.3
Srisimarat, W.4
Zimmermann, W.5
Pongsawasdi, P.6
Kaulpiboon, J.7
-
61
-
-
18144436201
-
Structural basis of the synthesis of large cycloamyloses by amylomaltase
-
N. Sträter, I. Przylas, W. Saenger, Y. Terada, K. Fujii, and T. Takaha Structural basis of the synthesis of large cycloamyloses by amylomaltase Biologia 57 Suppl.11 2002 93 99
-
(2002)
Biologia
, vol.57
, pp. 93-99
-
-
Sträter, N.1
Przylas, I.2
Saenger, W.3
Terada, Y.4
Fujii, K.5
Takaha, T.6
-
62
-
-
84868367234
-
Altered large-ring cyclodextrin product profile due to a mutation at Tyr-172 in the amylomaltase of Corynebacterium glutamicum
-
W. Srisimarat, J. Kaulpiboon, K. Krusong, W. Zimmermann, and P. Pongsawasdi Altered large-ring cyclodextrin product profile due to a mutation at Tyr-172 in the amylomaltase of Corynebacterium glutamicum Appl. Environ. Microbiol. 78 2012 7223 7228 10.1128/AEM.01366-12
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 7223-7228
-
-
Srisimarat, W.1
Kaulpiboon, J.2
Krusong, K.3
Zimmermann, W.4
Pongsawasdi, P.5
-
63
-
-
84924529757
-
Identification of essential tryptophan in amylomaltase from Corynebacterium glutamicum
-
W. Rachadech, P. Nimpiboon, W. Naumthong, S. Nakapong, K. Krusong, and P. Pongsawasdi Identification of essential tryptophan in amylomaltase from Corynebacterium glutamicum Int. J. Biol. Macromol. 76 2015 230 235 10.1016/j.ijbiomac.2015.02.035
-
(2015)
Int. J. Biol. Macromol.
, vol.76
, pp. 230-235
-
-
Rachadech, W.1
Nimpiboon, P.2
Naumthong, W.3
Nakapong, S.4
Krusong, K.5
Pongsawasdi, P.6
-
64
-
-
84867709204
-
Borrelia burgdorferi malQ mutants utilize disaccharides and traverse the enzootic cycle
-
L.L. Hoon-Hanks, E.A. Morton, M.C. Lybecker, J.M. Battisti, D.S. Samuels, and D. Drecktrah Borrelia burgdorferi malQ mutants utilize disaccharides and traverse the enzootic cycle FEMS Immunol. Med. Microbiol. 66 2012 157 165 10.1111/j.1574-695X.2012.00996.x
-
(2012)
FEMS Immunol. Med. Microbiol.
, vol.66
, pp. 157-165
-
-
Hoon-Hanks, L.L.1
Morton, E.A.2
Lybecker, M.C.3
Battisti, J.M.4
Samuels, D.S.5
Drecktrah, D.6
-
65
-
-
11144354393
-
Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D
-
M. Matsuzaki, O. Misumi, T. Shin-i, S. Maruyama, M. Takahara, S. Miyagishima, T. Mori, K. Nishida, F. Yagisawa, K. Nishida, Y. Yoshida, Y. Nishimura, S. Nakao, T. Kobayashi, Y. Momoyama, T. Higashiyama, A. Minoda, M. Sano, H. Nomoto, K. Oishi, H. Hayashi, F. Ohta, S. Nishizaka, S. Haga, S. Miura, T. Morishita, Y. Kabeya, K. Terasawa, Y. Suzuki, Y. Ishii, S. Asakawa, H. Takano, N. Ohta, H. Kuroiwa, K. Tanaka, N. Shimizu, S. Sugano, N. Sato, H. Nozaki, N. Ogasawara, Y. Kohara, and T. Kuroiwa Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D Nature 428 2004 653 657 10.1038/nature02398
-
(2004)
Nature
, vol.428
, pp. 653-657
-
-
Matsuzaki, M.1
Misumi, O.2
Shin-I, T.3
Maruyama, S.4
Takahara, M.5
Miyagishima, S.6
Mori, T.7
Nishida, K.8
Yagisawa, F.9
Nishida, K.10
Yoshida, Y.11
Nishimura, Y.12
Nakao, S.13
Kobayashi, T.14
Momoyama, Y.15
Higashiyama, T.16
Minoda, A.17
Sano, M.18
Nomoto, H.19
Oishi, K.20
Hayashi, H.21
Ohta, F.22
Nishizaka, S.23
Haga, S.24
Miura, S.25
Morishita, T.26
Kabeya, Y.27
Terasawa, K.28
Suzuki, Y.29
Ishii, Y.30
Asakawa, S.31
Takano, H.32
Ohta, N.33
Kuroiwa, H.34
Tanaka, K.35
Shimizu, N.36
Sugano, S.37
Sato, N.38
Nozaki, H.39
Ogasawara, N.40
Kohara, Y.41
Kuroiwa, T.42
more..
|