Autophagosome and phagosome

Methods in Molecular Biology

Volumn 445, Issue , 2008, Pages 1-9

  Deretic, Vojo ^a  

^a UNIVERSITY OF NEW MEXICO HEALTH SCIENCES CENTER   (United States)

Author keywords

Atg; Autophagy; Phagocytosis; Tor; Vps34

Indexed keywords

METAZOA;

EID: 84934441448     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-59745-157-4_1     Document Type: Article

References (34)

1. Levine, B. (2007) Cell biology: autophagy and cancer. Nature 446:745-747.
2. Shintani, T., and Klionsky, D. J. (2004) Autophagy in health and disease: a doubleedged sword. Science 306:990-995.
3. Levine, B., and Klionsky, D. J. (2004) Development by self-digestion: molecular mechanisms and biological functions of autophagy. Dev. Cell. 6:463-477.
4. Rubinsztein, D. C. (2006) The roles of intracellular protein-degradation pathways in neurodegeneration. Nature 443:780-786.
5. Schmid, D., Dengjel, J., Schoor, O., Stevanovic, S., and Munz, C. (2006) Autophagy in innate and adaptive immunity against intracellular pathogens. J. Mol. Med.:1-9.
6. Martinez-Vicente, M., and Cuervo, A. M. (2007) Autophagy and neurodegeneration: when the cleaning crew goes on strike. Lancet Neurol. 6:352-361.
7. Deretic, V. (2005) Autophagy in innate and adaptive immunity. Trends Immunol. 26:523-528.
8. Mizushima, N., and Klionsky, D. J. (2007) Protein turnover via autophagy: implications for metabolism. Annu. Rev. Nutr. 27:19-40.
9. Yoshimori, T. (2007) Autophagy: paying Charon's toll. Cell 128:833-836.
10. Kamada, Y., Sekito, T., and Ohsumi, Y. 2004) Autophagy in yeast: a TOR-mediated response to nutrient starvation. Curr. Top. Microbiol. Immunol. 279:73-84.
11. Fengsrud, M., Erichsen, E. S., Berg, T. O., Raiborg, D., and Seglen, P. O. (2000) Ultrastructural characterization of the delimiting membranes of isolated autophagosomes and amphisomes by freeze-fracture electron microscopy. Eur. J. Cell Biol. 79:871-882.
12. Young, A. R., Chan, E. Y., Hu, X. W., et al. (2006) Starvation and ULK1-dependent cycling of mammalian Atg9 between the TGN and endosomes. J. Cell Sci. 119:3888-3900.
13. Aderem, A., and Underhill, D. M. (1999) Mechanisms of phagocytosis in macrophages. Annu. Rev. Immunol. 17:593-623.
14. Qu, X., Zou, Z., Sun, Q., Luby-Phelps, K., et al. (2007) Autophagy gene-dependent clearance of apoptotic cells during embryonic development. Cell 128:931-946.
15. Joiner, K. A., Fuhrman, S. A., Miettinen, H. M., Kasper, L. H., and Mellman, I (1990) Toxoplasma gondii: fusion competence of parasitophorous vacuoles in Fc receptor-transfected fibroblasts. Science 249:641-646.
16. Cossart, P., and Sansonetti, P. J. (2004) Bacterial invasion: the paradigms of enteroinvasive pathogens. Science 304:242-248.
17. Gutierrez, M. G., Master, S. S., Singh, S. B., Taylor, G. A., Colombo, M. I., and Deretic, V. (2004) Autophagy is a defense mechanism inhibiting BCG and Mycobacterium tuberculosis survival in infected macrophages. Cell 119:753-766.
18. Singh, S. B., Davis, A. S., Taylor, G. A., and Deretic, V. (2006) Human IRGM induces autophagy to eliminate intracellular mycobacteria. Science 313:1438-1441.
19. Alonso, S., Pethe, K., Russell, D. G., and Purdy, G. E. (2007) Lysosomal killing of Mycobacterium mediated by ubiquitin-derived peptides is enhanced by autophagy. Proc. Natl. Acad. Sci. USA 104:6031-6036.
20. Schmid, D., Pypaert, M., and Munz, C. (2007) Antigen-loading compartments for major histocompatibility complex class II molecules continuously receive input from autophagosomes. Immunity 26:79-92.
21. Ramachandra, L., Noss, E., Boom, W. H., and Harding, C. V. (2001) Processing of Mycobacterium tuberculosis antigen 85B involves intraphagosomal formation of peptide-major histocompatibility complex II complexes and is inhibited by live bacilli that decrease phagosome maturation. J. Exp. Med. 194:1421-1432.
22. Pizarro-Cerda, J., and Cossart, P. (2004) Subversion of phosphoinositide metabolism by intracellular bacterial pathogens. Nat. Cell Biol. 6:1026-1033.
23. Fratti, R. A., Backer, J. M., Gruenberg, J., Corvera, S., and Deretic, V. (2001) Role of phosphatidylinositol 3-kinase and Rab5 effectors in phagosomal biogenesis and mycobacterial phagosome maturation arrest. J. Cell Biol. 154:631-644.
24. Vieira, O. V., Botelho, R. J., Rameh, L., et al. (2001) Distinct roles of class I and class III phosphatidylinositol 3-kinase in phagosome formation and maturation. J. Cell Biol. 155:19-25.
25. Vieira, O. V., Botelho, R. J., and Grinstein, S. (2002) Phagosome maturation: aging gracefully. Biochem. J. 366:689-704.
26. Pattingre, S., Tassa, A., Qu, X., et al. (2005) Bcl-2 antiapoptotic proteins inhibit Beclin 1-dependent autophagy. Cell 122:927-939.
27. Liang, C., Feng, P., Ku, B., et al. (2006) Autophagic and tumour suppressor activity of a novel Beclin 1-binding protein UVRAG. Nat. Cell Biol. 8:688-699.
28. Wullschleger, S., Loewith, R., and Hall, M. N. (2006) TOR signaling in growth and metabolism. Cell 124:471-484.
29. Meley, D., Bauvy, C., Houben-Weerts, J. H., et al. (2006) AMP-activated protein kinase and the regulation of autophagic proteolysis. J. Biol. Chem. 281:34870-34879.
30. Sofer, A., Lei, K., Johannessen, C. M., and Ellisen, L. W. (2005) Regulation of mTOR and cell growth in response to energy stress by REDD1. Mol. Cell Biol. 25:5834-5845.
31. Hoyer-Hansen, M., Bastholm, L., Szyniarowski, P., et al. (2007) Control of macroautophagy by calcium, calmodulin-dependent kinase kinase-beta, and Bcl-2. Mol. Cell 25:193-205.
32. Hsu, Y. C., Chern, J. J., Cai, Y., Liu, M., and Choi, K. W. (2007) Drosophila TCTP is essential for growth and proliferation through regulation of dRheb GTPase. Nature 445:785-788.
33. Byfield, M. P., Murray, J. T., and Backer, J. M. (2005) hVps34 is a nutrientregulated lipid kinase required for activation of p70 S6 kinase. J. Biol. Chem. 280:33076-33082.
34. Nobukuni, T., Joaquin, M., Roccio, M., et al. (2005) Amino acids mediate mTOR/raptor signaling through activation of class 3 phosphatidylinositol 3OH-kinase. Proc. Natl. Acad. Sci. USA 102:14238-14243.